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LOCUS XM_070218480 5478 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218480 VERSION XM_070218480.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5478 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5478 /gene="sol" /note="small optic lobes; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108055917" CDS 313..5124 /gene="sol" /codon_start=1 /product="calpain-D isoform X2" /protein_id="XP_070074581.1" /db_xref="GeneID:108055917" /translation="MGTISSVLQWSCTKCNTINPTESLKCFNCGTVRKVFPQQQQQQQ RRVTASWTADDALEQEQAEREKEKEQAERDREKDKDKEKGRAAVARSEYKHVYKSLLR GCLKRPQRNSQNLPANCVDCEDTRKYIKSSIELYRHFSNPALNRRWVCHACGTDNSSV TWHCLICDTVSYLAPIYKDAIAADRDCGQELAGSLGNRGELLAADPHPHPHPHPHHHH HYQLQQELEEQHHHQLHSQQHSHKRHLKGRSGSGSGAGSGQGSGQGSGAGSSAGSGLR RTQSLSTAIDKSASGRSCHICYANNQSKDIFNLPQVKPAPQLTGIPPVAACSNSRFAI ANDTFCRRKQNNNNKNQNHKVVRESGAKRKYNFTITTLSRSAAKDSIGGQGQMKPLRQ QPVNLNTQQQQQQQKSQLQQQQQQQQRKNQREPAAVSMNPTQFTIPRNGVFIAVNEWS EPMANSSSNSHQHHSHHHHHHHNHHHHSSSSNSNNSSSNSNSNSINNNSSSNSNSSSN KLYENECVALAQQQLRAAAAQAAQAAATAVAIVSSEQAAPQATMPIYAQVNKQHKLKK KQQMAGSESQANNNGESIMEAVGGGESPAGIPDNDNGEAGSDQSESQVEEHSIYAKVW KGPRKTTESKITHDPGSSSRLIIATSATAAATTSSGAAIVAAGSRSKMWTCIKCSYAY NRLWLQSCEMCEAKLEQQLLQQQQQQQAVVSFGQEKAAPRDEPWTCKKCTLVNYSTAM ACVVCGGSKLKSISSIEDMTLRKGEFWTCGHCTLKNSLHSPVCSACKSHRQPQLSISS LEAVRERPDGQSYEEQDAVAAAAAGGGGSTTSNSEVKAPAAAALNLPLASVALPLPLL QIPTTSAAGLRGSRSPSPRMQPSQQQQQRSSSSTSSSSGAIPKRHSTGGSIVPRNISL AALASSYNLQQQSAASAPESSSLKKWQCPACTYDNCAASVVCDICSSPRGLASAVLGE ALARKSIRVALTPADIRQESKLMENLRQLEETEALTKWQNIIQYCRDNSELFVDDSFP PAPKSLYYNPASGAGEGNPVVQWRRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNC WLLSALAVLAEREDLVKEVLVTKEICGQGAYQVRLCKDGKWTTVLVDDLLPCDKRGHL VYSQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLPM PSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKGLRPRHAYSVLDVK DIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPHGASEGVFWISFEDVLNY FDCIDICKVRSGWNEVRLQGTLQPLCSISCVLLTVLEPTEAEFTLFQEGQRNSEKSQR SQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVRGFVGCHKMLERDIYLLVCLAFNHWHT GIEDPHQYPQCILAIHSSKRLLVEQISPSPHLLADAIISLTLTKGQRHEGREGMTAYY LTKGWAGLVVMVENRHENKWIHVKCDCQESYNVVSTRGELKTVDSVPPLQRQVIIVLT QLEGSGGFSIAHRLTHRLANSRGLHDWGPPGATHCPPIENVHGLHAPRLIT" misc_feature 328..414 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 340..399 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 742..831 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2317..2400 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2329..2391 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" misc_feature 2476..2559 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2488..2547 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 2605..2688 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2611..2670 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 3124..3201 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3340..4323 /gene="sol" /note="Calpain-like thiol protease family; Region: CysPc; smart00230" /db_xref="CDD:128526" misc_feature order(3574..3576,4072..4074,4132..4134) /gene="sol" /note="catalytic site [active]" /db_xref="CDD:238004" polyA_site 5478 /gene="sol" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatttcatct ccctatcgag atatcaccaa aagccaaaga attaaagaaa gccgattaaa 61 aaggagcccg gcgtttccgc ggcgtgcaac tgtttttggt cctcgttttg gtcccgggtt 121 ctggtcctcc aaatcgatct ccatctccgc ccggtcgcca caacaacgca ccattcagta 181 ccacttccag ttgcacattc tcagccgcaa ccacaatcac agcccacatc ccaccccccg 241 ccccccattc actcccccgc cagccaacaa caacaacaac aacagtagcg attccagcga 301 ttcccccgcg aaatgggcac catctcatcc gtgctgcagt ggtcgtgcac caagtgcaac 361 acgatcaatc cgacggagtc gttaaagtgc ttcaattgcg gcaccgttcg caaggtgttc 421 ccccaacagc aacaacaaca acagcgaagg gtcaccgcct cctggacagc tgatgatgca 481 ctggagcagg agcaggcgga gagggagaag gagaaggagc aggcagagag ggacagggag 541 aaggataagg acaaggagaa gggcagggcg gcggttgcca ggagcgagta caagcatgtg 601 tacaagtcgc tgctgcgcgg atgcctgaag agaccgcagc ggaacagcca gaacctgccc 661 gccaattgcg tcgactgcga ggatacgcgc aagtacatca agagctccat cgagctctac 721 cgccacttct cgaatcccgc cctcaatcgg cggtgggtgt gccacgcctg cggcaccgac 781 aacagctcgg tcacctggca ctgcctcatc tgcgacacgg tcagctatct ggcgcccatc 841 tacaaggacg ccattgcagc cgatcgcgat tgcggccagg agctggccgg cagtctgggc 901 aatcgcggcg agctgctggc agcggatccc catccgcatc cccatccgca tccacatcat 961 catcatcact accaactgca acaggagctg gaggagcagc accatcatca gttacattcc 1021 cagcagcact cgcacaagag gcaccttaaa ggtagatctg gctcgggatc gggagcggga 1081 tcgggtcagg gatcgggtca gggatcgggt gcaggttcga gtgcaggatc tggactgcgg 1141 cgcacccaga gcctgagcac cgccatcgac aagagcgcct cggggcgcag ctgccacatc 1201 tgctatgcga acaaccagag caaggacatc ttcaatctgc cgcaggtcaa gccggcgccc 1261 cagctgacag ggattccccc cgtggccgcc tgcagcaact cgcgattcgc catcgccaac 1321 gacacgtttt gccggcgcaa gcagaacaac aacaacaaga accagaacca caaggtggtg 1381 cgggagagcg gggccaagcg gaagtacaac ttcaccatta cgacgctctc gcgttcggcg 1441 gccaaggatt cgattggcgg ccagggccaa atgaagccgc tgcgccagca gcccgtcaat 1501 ctgaataccc agcagcagca gcagcagcag aagtcgcagc tgcagcagca gcagcagcag 1561 cagcagagga agaaccagcg ggagccagca gcagtgagta tgaatccaac gcagttcacc 1621 attccgcgga acggcgtctt catagccgtc aacgagtggt cggagccgat ggccaacagc 1681 tcctccaata gtcaccagca tcatagtcat catcatcatc accaccacaa tcaccatcat 1741 cacagcagca gcagcaatag caacaacagc agtagcaaca gcaacagcaa cagcatcaac 1801 aacaacagca gcagcaacag caacagcagc agcaacaagt tgtacgagaa cgagtgcgtc 1861 gccttggcgc agcagcaact gagagcagcc gctgcccagg cggcgcaggc agccgccacg 1921 gcggtggcca ttgtgagctc ggaacaggcg gcacctcagg ccaccatgcc catctatgcg 1981 caggttaaca agcagcacaa gctcaagaag aagcaacaga tggcaggcag cgaatcgcag 2041 gcgaacaaca atggggaatc gatcatggag gcggtcggtg gtggggaatc gcccgcagga 2101 atccccgaca acgacaacgg ggaggccggc agcgatcagt ccgagtcgca ggtggaggag 2161 cactccatct acgccaaggt gtggaaggga ccgcgcaaga cgaccgaatc gaaaatcacg 2221 catgatccgg gtagcagcag tcgcctgata atagccacat ccgcaacagc agcagcgacc 2281 acatcctcgg gagcggcgat agttgcagca ggcagccgca gcaagatgtg gacatgcatc 2341 aaatgttcct atgcctacaa tcgactctgg ctgcagagct gcgagatgtg cgaggcgaag 2401 ctggagcagc aacttctgca gcagcagcag cagcaacagg cagttgtgtc ctttggccag 2461 gagaaagcag ccccccgcga cgagccgtgg acctgcaaga agtgcaccct ggtcaactac 2521 tcgacggcca tggcctgcgt ggtctgcggc ggctccaagc tgaagagcat ctcctccatc 2581 gaggacatga cgctgcgcaa gggcgagttc tggacctgcg gccactgtac gctgaagaac 2641 tcgctccact cgccggtgtg cagtgcctgc aagtcgcacc gccagccgca gctttcgatt 2701 tcctcgctgg aggcggttcg cgagcgaccc gatggccagt cgtacgagga gcaggatgca 2761 gtggcagcag cggcggcagg aggaggaggt agcacaacta gtaatagcga ggtgaaagca 2821 ccggcagcag cagctctcaa tctgccgctg gcctcggtgg cgctgcccct gccgcttctg 2881 cagattccaa cgacctcggc ggctgggctg cgtggctcgc gcagtccctc gcccaggatg 2941 cagccatcgc agcagcagca gcagcgaagt tccagctcca cctcctcctc ctcgggcgcc 3001 atacccaaac ggcacagcac cggcggctcc attgtgccca ggaacatctc gctggccgct 3061 ttggcctcca gctacaatct gcagcagcaa tcggcagctt ctgctcccga gagttccagc 3121 ctgaagaagt ggcagtgccc ggcctgcacg tacgataatt gtgccgcttc cgttgtctgc 3181 gacatttgct ccagtccgcg cggcctggcg agcgccgtgc tgggcgaagc gctggccagg 3241 aagtcgatac gcgtggcgct caccccggcg gacattcggc aggagagcaa gctaatggag 3301 aacctgcgcc agctggagga gaccgaggcg ctgaccaagt ggcagaacat cattcagtat 3361 tgccgcgaca acagcgagct cttcgtcgac gattcgtttc cgccggcgcc gaagagtctg 3421 tactacaatc cggcgagcgg agcgggcgag ggcaatccgg tggtgcagtg gcgccggccg 3481 cacgagatca actgcgacgg cggtgcgtat ccgccgtggg ccgtcttccg cacaccgctg 3541 ccctcggaca tttgccaggg cgtcctgggc aactgctggc tactcagcgc cctcgctgtg 3601 ctggcggaac gcgaggatct ggtgaaggag gtgctggtca ccaaggagat atgcggccag 3661 ggagcgtacc aggtgcgcct ctgcaaggac ggcaagtgga cgaccgtgct ggtcgatgat 3721 ctgctgccgt gcgacaagcg cggccatctc gtctactcgc aggccaagcg caagcagctc 3781 tgggtgccgt tgatcgagaa ggccgtggcc aagatccatg gctgctacga ggctcttgtg 3841 tcgggccgag ccatcgaggg cctggccacg ctgacggggg cgccctgcga gagcattccg 3901 ctgcaggcga gcagcctgcc catgcccagc gaggatgagc tggacaagga cctgatctgg 3961 gcccagctgc tgagctcgcg ctgcgtgcga ttcctcatgg gcgccagctg cggcggaggc 4021 aacatgaagg tggacgagga ggagtaccag cagaagggtc tgcgaccgcg acacgcctac 4081 tcggtgctgg atgtgaagga catccaggga catcggctgc tcaagctgcg caatccctgg 4141 ggtcactatt cgtggcgcgg cgactggtcg gatgactcct cgctgtggac ggacgacctg 4201 cgcgatgctc taatgccgca cggcgccagc gagggcgtct tttggatctc gttcgaggat 4261 gtgctcaact acttcgactg catcgacatc tgcaaggtgc gctccggctg gaacgaggtg 4321 cgtctgcagg gcactttgca gcccttgtgc tccatctcct gtgtgctgct caccgtgctg 4381 gagccgacgg aggcggagtt cacgctcttc caggaggggc agcgcaactc ggagaagtcg 4441 cagcgctcgc agctggacct gtgcgttgtg atattccgca cccgctcgcc ggcggcgccg 4501 gaaattggtc gtctggtgga gcacagcaag cggcaggttc gcggctttgt gggctgccac 4561 aagatgctcg agcgggacat ttacctgctg gtctgcctgg ccttcaatca ctggcacacg 4621 ggcatcgagg atccgcacca gtatccgcag tgcatcctgg cgatacacag ctccaagcgg 4681 ctgctcgtcg agcagatcag tccctcgccg cacctcctcg ccgacgccat aatcagtttg 4741 accctgacca agggtcagcg gcacgagggg cgcgagggca tgaccgccta ctacctgacc 4801 aagggctggg cgggtctggt tgtgatggtg gagaaccggc acgagaacaa atggatccat 4861 gtgaagtgcg actgccagga gagctacaat gtggtgtcca cgcggggcga actcaagacg 4921 gtggactcgg tgccgccgct gcagagacaa gtgatcatcg tgctcaccca actggagggc 4981 agtggcggct tcagcatcgc ccaccggctg acccatcggc tggccaactc gcgcggcctt 5041 cacgactggg ggccgcccgg cgccacccac tgtccgccca tcgagaatgt ccacggattg 5101 cacgccccgc ggctgatcac ctagaactct agtcgatttt ttgtcaacgt atcactcaca 5161 cacacatcac agcgaaggaa aaccaaaagc taaaaccaac catcaggcaa aacaaagcat 5221 atatatgtgt atagatccgt gcagatatat ctgatatatg tgtgtttatg tactaaggcg 5281 ggagcagatc gttcgggatg cggatgcgga tgcagagtcc ggagacctcg gcacaattcc 5341 ctcgagatca aatgatatat gttttgattt gagcgccgat gattatggat tatatagata 5401 tgtattgtga atttaagtgc atccaatatt aatatgtgta ttgttttaaa aataaagact 5461 acaagttata aaagccaa