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LOCUS XM_070218479 5481 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_070218479 VERSION XM_070218479.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5481 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5481 /gene="sol" /note="small optic lobes; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055917" CDS 313..5127 /gene="sol" /codon_start=1 /product="calpain-D isoform X1" /protein_id="XP_070074580.1" /db_xref="GeneID:108055917" /translation="MGTISSVLQWSCTKCNTINPTESLKCFNCGTVRKVFPQQQQQQQ RRVTASWTADDALEQEQAEREKEKEQAERDREKDKDKEKGRAAVARSEYKHVYKSLLR GCLKRPQRNSQNLPANCVDCEDTRKYIKSSIELYRHFSNPALNRRWVCHACGTDNSSV TWHCLICDTVSYLAPIYKDAIAADRDCGQELAGSLGNRGELLAADPHPHPHPHPHHHH HYQLQQELEEQHHHQLHSQQHSHKRHLKGRSGSGSGAGSGQGSGQGSGAGSSAGSGLR RTQSLSTAIDKSASGRSCHICYANNQSKDIFNLPQVKPAPQLTGIPPVAACSNSRFAI ANDTFCRRKQNNNNKNQNHKVVRESGAKRKYNFTITTLSRSAAKDSIGGQGQMKPLRQ QPVNLNTQQQQQQQKSQLQQQQQQQQRKNQREPAAVSMNPTQFTIPRNGVFIAVNEWS EPMANSSSNSHQHHSHHHHHHHNHHHHSSSSNSNNSSSNSNSNSINNNSSSNSNSSSN KLYENECVALAQQQLRAAAAQAAQAAATAVAIVSSEQAAPQATMPIYAQVNKQHKLKK KQQMAGSESQANNNGESIMEAVGGGESPAGIPDNDNGEAGSDQSESQVEEHSIYAKVW KGPRKTTESKITHDPGSSSRLIIATSATAAATTSSGAAIVAAGSRSKMWTCIKCSYAY NRLWLQSCEMCEAKLEQQLLQQQQQQQAVVSFGQEKAAAPRDEPWTCKKCTLVNYSTA MACVVCGGSKLKSISSIEDMTLRKGEFWTCGHCTLKNSLHSPVCSACKSHRQPQLSIS SLEAVRERPDGQSYEEQDAVAAAAAGGGGSTTSNSEVKAPAAAALNLPLASVALPLPL LQIPTTSAAGLRGSRSPSPRMQPSQQQQQRSSSSTSSSSGAIPKRHSTGGSIVPRNIS LAALASSYNLQQQSAASAPESSSLKKWQCPACTYDNCAASVVCDICSSPRGLASAVLG EALARKSIRVALTPADIRQESKLMENLRQLEETEALTKWQNIIQYCRDNSELFVDDSF PPAPKSLYYNPASGAGEGNPVVQWRRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGN CWLLSALAVLAEREDLVKEVLVTKEICGQGAYQVRLCKDGKWTTVLVDDLLPCDKRGH LVYSQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLP MPSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKGLRPRHAYSVLDV KDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPHGASEGVFWISFEDVLN YFDCIDICKVRSGWNEVRLQGTLQPLCSISCVLLTVLEPTEAEFTLFQEGQRNSEKSQ RSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVRGFVGCHKMLERDIYLLVCLAFNHWH TGIEDPHQYPQCILAIHSSKRLLVEQISPSPHLLADAIISLTLTKGQRHEGREGMTAY YLTKGWAGLVVMVENRHENKWIHVKCDCQESYNVVSTRGELKTVDSVPPLQRQVIIVL TQLEGSGGFSIAHRLTHRLANSRGLHDWGPPGATHCPPIENVHGLHAPRLIT" misc_feature 328..414 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 340..399 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 742..831 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2317..2400 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2329..2391 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 2479..2562 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2491..2550 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 2608..2691 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 2614..2673 /gene="sol" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 3127..3204 /gene="sol" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3343..4326 /gene="sol" /note="Calpain-like thiol protease family; Region: CysPc; smart00230" /db_xref="CDD:128526" misc_feature order(3577..3579,4075..4077,4135..4137) /gene="sol" /note="catalytic site [active]" /db_xref="CDD:238004" polyA_site 5481 /gene="sol" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatttcatct ccctatcgag atatcaccaa aagccaaaga attaaagaaa gccgattaaa 61 aaggagcccg gcgtttccgc ggcgtgcaac tgtttttggt cctcgttttg gtcccgggtt 121 ctggtcctcc aaatcgatct ccatctccgc ccggtcgcca caacaacgca ccattcagta 181 ccacttccag ttgcacattc tcagccgcaa ccacaatcac agcccacatc ccaccccccg 241 ccccccattc actcccccgc cagccaacaa caacaacaac aacagtagcg attccagcga 301 ttcccccgcg aaatgggcac catctcatcc gtgctgcagt ggtcgtgcac caagtgcaac 361 acgatcaatc cgacggagtc gttaaagtgc ttcaattgcg gcaccgttcg caaggtgttc 421 ccccaacagc aacaacaaca acagcgaagg gtcaccgcct cctggacagc tgatgatgca 481 ctggagcagg agcaggcgga gagggagaag gagaaggagc aggcagagag ggacagggag 541 aaggataagg acaaggagaa gggcagggcg gcggttgcca ggagcgagta caagcatgtg 601 tacaagtcgc tgctgcgcgg atgcctgaag agaccgcagc ggaacagcca gaacctgccc 661 gccaattgcg tcgactgcga ggatacgcgc aagtacatca agagctccat cgagctctac 721 cgccacttct cgaatcccgc cctcaatcgg cggtgggtgt gccacgcctg cggcaccgac 781 aacagctcgg tcacctggca ctgcctcatc tgcgacacgg tcagctatct ggcgcccatc 841 tacaaggacg ccattgcagc cgatcgcgat tgcggccagg agctggccgg cagtctgggc 901 aatcgcggcg agctgctggc agcggatccc catccgcatc cccatccgca tccacatcat 961 catcatcact accaactgca acaggagctg gaggagcagc accatcatca gttacattcc 1021 cagcagcact cgcacaagag gcaccttaaa ggtagatctg gctcgggatc gggagcggga 1081 tcgggtcagg gatcgggtca gggatcgggt gcaggttcga gtgcaggatc tggactgcgg 1141 cgcacccaga gcctgagcac cgccatcgac aagagcgcct cggggcgcag ctgccacatc 1201 tgctatgcga acaaccagag caaggacatc ttcaatctgc cgcaggtcaa gccggcgccc 1261 cagctgacag ggattccccc cgtggccgcc tgcagcaact cgcgattcgc catcgccaac 1321 gacacgtttt gccggcgcaa gcagaacaac aacaacaaga accagaacca caaggtggtg 1381 cgggagagcg gggccaagcg gaagtacaac ttcaccatta cgacgctctc gcgttcggcg 1441 gccaaggatt cgattggcgg ccagggccaa atgaagccgc tgcgccagca gcccgtcaat 1501 ctgaataccc agcagcagca gcagcagcag aagtcgcagc tgcagcagca gcagcagcag 1561 cagcagagga agaaccagcg ggagccagca gcagtgagta tgaatccaac gcagttcacc 1621 attccgcgga acggcgtctt catagccgtc aacgagtggt cggagccgat ggccaacagc 1681 tcctccaata gtcaccagca tcatagtcat catcatcatc accaccacaa tcaccatcat 1741 cacagcagca gcagcaatag caacaacagc agtagcaaca gcaacagcaa cagcatcaac 1801 aacaacagca gcagcaacag caacagcagc agcaacaagt tgtacgagaa cgagtgcgtc 1861 gccttggcgc agcagcaact gagagcagcc gctgcccagg cggcgcaggc agccgccacg 1921 gcggtggcca ttgtgagctc ggaacaggcg gcacctcagg ccaccatgcc catctatgcg 1981 caggttaaca agcagcacaa gctcaagaag aagcaacaga tggcaggcag cgaatcgcag 2041 gcgaacaaca atggggaatc gatcatggag gcggtcggtg gtggggaatc gcccgcagga 2101 atccccgaca acgacaacgg ggaggccggc agcgatcagt ccgagtcgca ggtggaggag 2161 cactccatct acgccaaggt gtggaaggga ccgcgcaaga cgaccgaatc gaaaatcacg 2221 catgatccgg gtagcagcag tcgcctgata atagccacat ccgcaacagc agcagcgacc 2281 acatcctcgg gagcggcgat agttgcagca ggcagccgca gcaagatgtg gacatgcatc 2341 aaatgttcct atgcctacaa tcgactctgg ctgcagagct gcgagatgtg cgaggcgaag 2401 ctggagcagc aacttctgca gcagcagcag cagcaacagg cagttgtgtc ctttggccag 2461 gagaaagcag cagccccccg cgacgagccg tggacctgca agaagtgcac cctggtcaac 2521 tactcgacgg ccatggcctg cgtggtctgc ggcggctcca agctgaagag catctcctcc 2581 atcgaggaca tgacgctgcg caagggcgag ttctggacct gcggccactg tacgctgaag 2641 aactcgctcc actcgccggt gtgcagtgcc tgcaagtcgc accgccagcc gcagctttcg 2701 atttcctcgc tggaggcggt tcgcgagcga cccgatggcc agtcgtacga ggagcaggat 2761 gcagtggcag cagcggcggc aggaggagga ggtagcacaa ctagtaatag cgaggtgaaa 2821 gcaccggcag cagcagctct caatctgccg ctggcctcgg tggcgctgcc cctgccgctt 2881 ctgcagattc caacgacctc ggcggctggg ctgcgtggct cgcgcagtcc ctcgcccagg 2941 atgcagccat cgcagcagca gcagcagcga agttccagct ccacctcctc ctcctcgggc 3001 gccataccca aacggcacag caccggcggc tccattgtgc ccaggaacat ctcgctggcc 3061 gctttggcct ccagctacaa tctgcagcag caatcggcag cttctgctcc cgagagttcc 3121 agcctgaaga agtggcagtg cccggcctgc acgtacgata attgtgccgc ttccgttgtc 3181 tgcgacattt gctccagtcc gcgcggcctg gcgagcgccg tgctgggcga agcgctggcc 3241 aggaagtcga tacgcgtggc gctcaccccg gcggacattc ggcaggagag caagctaatg 3301 gagaacctgc gccagctgga ggagaccgag gcgctgacca agtggcagaa catcattcag 3361 tattgccgcg acaacagcga gctcttcgtc gacgattcgt ttccgccggc gccgaagagt 3421 ctgtactaca atccggcgag cggagcgggc gagggcaatc cggtggtgca gtggcgccgg 3481 ccgcacgaga tcaactgcga cggcggtgcg tatccgccgt gggccgtctt ccgcacaccg 3541 ctgccctcgg acatttgcca gggcgtcctg ggcaactgct ggctactcag cgccctcgct 3601 gtgctggcgg aacgcgagga tctggtgaag gaggtgctgg tcaccaagga gatatgcggc 3661 cagggagcgt accaggtgcg cctctgcaag gacggcaagt ggacgaccgt gctggtcgat 3721 gatctgctgc cgtgcgacaa gcgcggccat ctcgtctact cgcaggccaa gcgcaagcag 3781 ctctgggtgc cgttgatcga gaaggccgtg gccaagatcc atggctgcta cgaggctctt 3841 gtgtcgggcc gagccatcga gggcctggcc acgctgacgg gggcgccctg cgagagcatt 3901 ccgctgcagg cgagcagcct gcccatgccc agcgaggatg agctggacaa ggacctgatc 3961 tgggcccagc tgctgagctc gcgctgcgtg cgattcctca tgggcgccag ctgcggcgga 4021 ggcaacatga aggtggacga ggaggagtac cagcagaagg gtctgcgacc gcgacacgcc 4081 tactcggtgc tggatgtgaa ggacatccag ggacatcggc tgctcaagct gcgcaatccc 4141 tggggtcact attcgtggcg cggcgactgg tcggatgact cctcgctgtg gacggacgac 4201 ctgcgcgatg ctctaatgcc gcacggcgcc agcgagggcg tcttttggat ctcgttcgag 4261 gatgtgctca actacttcga ctgcatcgac atctgcaagg tgcgctccgg ctggaacgag 4321 gtgcgtctgc agggcacttt gcagcccttg tgctccatct cctgtgtgct gctcaccgtg 4381 ctggagccga cggaggcgga gttcacgctc ttccaggagg ggcagcgcaa ctcggagaag 4441 tcgcagcgct cgcagctgga cctgtgcgtt gtgatattcc gcacccgctc gccggcggcg 4501 ccggaaattg gtcgtctggt ggagcacagc aagcggcagg ttcgcggctt tgtgggctgc 4561 cacaagatgc tcgagcggga catttacctg ctggtctgcc tggccttcaa tcactggcac 4621 acgggcatcg aggatccgca ccagtatccg cagtgcatcc tggcgataca cagctccaag 4681 cggctgctcg tcgagcagat cagtccctcg ccgcacctcc tcgccgacgc cataatcagt 4741 ttgaccctga ccaagggtca gcggcacgag gggcgcgagg gcatgaccgc ctactacctg 4801 accaagggct gggcgggtct ggttgtgatg gtggagaacc ggcacgagaa caaatggatc 4861 catgtgaagt gcgactgcca ggagagctac aatgtggtgt ccacgcgggg cgaactcaag 4921 acggtggact cggtgccgcc gctgcagaga caagtgatca tcgtgctcac ccaactggag 4981 ggcagtggcg gcttcagcat cgcccaccgg ctgacccatc ggctggccaa ctcgcgcggc 5041 cttcacgact gggggccgcc cggcgccacc cactgtccgc ccatcgagaa tgtccacgga 5101 ttgcacgccc cgcggctgat cacctagaac tctagtcgat tttttgtcaa cgtatcactc 5161 acacacacat cacagcgaag gaaaaccaaa agctaaaacc aaccatcagg caaaacaaag 5221 catatatatg tgtatagatc cgtgcagata tatctgatat atgtgtgttt atgtactaag 5281 gcgggagcag atcgttcggg atgcggatgc ggatgcagag tccggagacc tcggcacaat 5341 tccctcgaga tcaaatgata tatgttttga tttgagcgcc gatgattatg gattatatag 5401 atatgtattg tgaatttaag tgcatccaat attaatatgt gtattgtttt aaaaataaag 5461 actacaagtt ataaaagcca a