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LOCUS XM_070218477 2415 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218477 VERSION XM_070218477.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2415 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2415 /gene="per" /note="period circadian regulator; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84 Proteins" /db_xref="GeneID:108063824" CDS 316..2271 /gene="per" /codon_start=1 /product="period circadian protein isoform X2" /protein_id="XP_070074578.1" /db_xref="GeneID:108063824" /translation="MENLNNMEGGESTESTHNTKVSDSAYSNSCSNSQSQRSGSSKSR LSGSHSSGSSGYGGKPSTQASSSDMIIKRNKDKSRKKKKNKGTGQTQVQSLISAAASL EGGIGGAEEKPPRPSGSGCGDQQTLQDHQQHGEDRGEATEPAEQLRQQQEEEDDQSGS ESESADRGDLGAAKSEAEQSFPIPSPLSVTIVPPSMGGGVGGCGGVGHASGLDSGLGK FDKAWGESTPGKLESMAGVSAAGASGGIPGRVKEDSFCCVISMHDGIVLYTTPSITDV LGFPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSMPKDAKSTFCVMLRRYR GLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSY KVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSV MKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHH RVFQGPKQCNVFEAAPTCKLKISEEAQNRNTRIKEDIVKRLAETVSRPSDTVKQEVSR RCQALASFMETLMDEVSRADLKLELPHENELTVSERDSVMLGEISPHHDYYDTSRSRR RRSSIRPRRSRRRSRGAPVSVAEPVDR" misc_feature 1072..1359 /gene="per" /note="PAS fold; Region: PAS; pfam00989" /db_xref="CDD:395786" misc_feature 1522..1845 /gene="per" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:238075" misc_feature order(1570..1572,1582..1584,1600..1602,1639..1650, 1741..1743,1756..1758) /gene="per" /note="putative active site [active]" /db_xref="CDD:238075" misc_feature order(1630..1632,1642..1644,1666..1668,1675..1680, 1777..1779,1783..1785) /gene="per" /note="heme pocket [chemical binding]; other site" /db_xref="CDD:238075" ORIGIN 1 gtattcgtgg ggatttaaag ctggaaggtc gaacaacgcg ctcgccgagc aaccgaacta 61 tttgaaagaa tcgaaacaac gacctctaga aacacgcaag ataccttttt tttgccagca 121 gaaatacctt ttatttattc ggatttggtg acagtgagag tgtcgaagct gagtgcgaat 181 tgaaccagcc gcaaagtgag ggataaagcc cacaacttga tctatagcca tctcatcctc 241 ccgcgagtgc aacagggaga gcgagcgaga gtaaatctcg caaagtaaat actatatatc 301 acacaaattg gcaatatgga gaacctaaac aacatggagg gcggcgagtc cacggagtcc 361 acacacaaca ccaaggtgtc cgattcggcg tattcaaaca gctgcagcaa cagtcagtcg 421 cagcgcagtg gcagttccaa gtcccggctg agcggcagcc actcgtccgg cagcagcggc 481 tatgggggca agccctcgac gcaggccagc agcagcgaca tgatcatcaa gcggaacaag 541 gacaagtcgc gcaagaagaa gaagaacaag gggacggggc agacgcaggt gcaatccctg 601 atctcggcgg ccgcctccct ggaggggggc ataggtgggg cggaggagaa gccgccgcgg 661 cccagcggca gtggatgcgg ggaccagcag acgctgcagg accaccagca gcacggcgag 721 gatcgcggcg aggccacgga gccggcggag cagctgcgcc agcagcagga ggaggaggac 781 gaccagtcgg gatccgagtc cgagtcggcg gatcgtggcg atctgggcgc ggccaagtcg 841 gaggcggagc agagcttccc catcccctcg ccgctgtccg tgaccatagt gccgccctcg 901 atgggcggcg gagtgggcgg ctgcgggggc gtgggccacg cctccggcct ggacagcggc 961 ctggggaagt tcgacaaagc gtggggcgag tcgacgccgg gcaagctgga gtccatggcg 1021 ggcgtgagcg ccgcgggagc gtcgggcggg atcccgggca gggtgaagga ggacagcttc 1081 tgctgcgtga tctccatgca cgacggcatc gtgctctaca ccacgcccag catcaccgat 1141 gtgctgggct ttccgcgcga catgtggctg ggccgctcct tcatcgactt tgtgcacctc 1201 aaggaccggg ccaccttcgc cagccagatc acgacgggca taccgatcgc cgagtcgcgg 1261 ggcagcatgc ccaaggacgc caagagcacc ttctgcgtga tgctgcgccg ctaccggggc 1321 ctcaagtccg gcggattcgg ggtgatcggg cggccggtga gctacgagcc cttccggctg 1381 ggcctgacct tccgggaggc gcccgaggag gcgcggccgg acaactacat ggtctccaac 1441 ggcaccaaca tgctgctcgt catctgcgcc actccgatca agagcagcta caaggttccc 1501 gacgagatcc tctcgcagaa gagccccaag ttcgccatcc ggcacacggc caccgggatc 1561 atctcgcacg tggacagcgc ggcggtgagt gcgctgggct acctgccgca ggacctcatc 1621 ggcaggagca tcatggactt ctaccaccac gaggacctca gcgtcatgaa ggagacctac 1681 gagacggtga tgaagaaggg ccaaacggcg ggcgcctcct tctgcagcaa gccctaccgc 1741 ttcctcatcc agaacggctg ctacgtcctc ctggagaccg agtggaccag cttcgtaaat 1801 ccgtggtcgc gcaagctgga gttcgtggtc ggccatcaca gggtgtttca gggtcccaaa 1861 cagtgcaacg tcttcgaggc ggcacccacg tgcaagctca agatatcgga ggaggcccag 1921 aaccggaaca cgcgcatcaa ggaggacatc gtgaagcggc tggcggagac cgtctcccgt 1981 ccgtcggaca cggtcaagca ggaggtctcc cgccgctgcc aggcgctggc cagcttcatg 2041 gagaccctca tggacgaggt ctcgcgcgcc gacctcaagc tggagctgcc gcacgagaac 2101 gagctgaccg tctcggagcg cgacagcgtg atgctcggcg agatctcgcc gcaccacgac 2161 tactatgaca caagccggtc acggcgccgg cggagctcga tccgcccaag acggagccgc 2221 cgccggagcc gcggagcacc tgtgtcagtg gcggagccag tggaccgatg agtcccgtcc 2281 acgagggcag cgggggcagc ggctcctccg ggaacttcac caccgccagt aatatacaca 2341 tgagcagtgt gaccaatacg agcattgcgg gaaccggtgg aactggaacg ggaactggta 2401 cgggaactgg tactg