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LOCUS XM_070218465 4927 bp mRNA linear INV 09-DEC-2024 ABCA3 (LOC108056743), transcript variant X2, mRNA. ACCESSION XM_070218465 VERSION XM_070218465.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4927 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4927 /gene="LOC108056743" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108056743" CDS 374..4879 /gene="LOC108056743" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X2" /protein_id="XP_070074566.1" /db_xref="GeneID:108056743" /translation="MHFAIIMPSELRNYERTWIGDSWKESSFLVDHDHEHDLWEAEDG HTDYLQEGFVALQYFISLEYLQTASKAEKLPTIQMRRFDENPNVLLSDGLEPSAILLI LLGFMFPVAVLIKLIVEEREAGQRFVLEANNASATLQVAAWFFNAFFQLLLVSFLMAL LLKIQWNGTSAALNKCPWSVLLLFLISYGFSVTSFVIFTAAVVRKPRTAVVVVPILWI LLPLPFLSDEDLISEESHGFYAVATALICNVSFSRGLKKLIYLENYPVKVPSRKYLMY KVMDCDYGLWMPIACFYLQAITFVLTALMLENNTCIWMARTFGKMWKCKCARNRNLNL MGSEISGEPEKESSSARIEFRNVSKRFSKKFVVRNFTLSMHPGEVVVLLGHNSSGKRT IIKMAYGLMKPSAGEIYLSGFNVVTHKRLALRSCGISLTCSALFSEFSVFDHLVFFCR LRGLRRSEAKEEVRAYSHHLKIEKWQEAPVKRLSIGQKRLLVSLCAFVGRTQIVILDK PLDGVDEPKANLFFDFVQDQKKNRSIFLTTNSPKVASGIADRIAILSRGKLLSFGTEK GLCQNLNEAYRLTLYGNEHCDFKEVQIFLENFVPDIEMAFTLGDSAVFLIKNKNQTEL INLLENLSRFKEDLEVYSYQLEECSLDDILYKLFTRDQSSFEFGDLESHIFPIISRPR RRYIALIQHLWEVLRQRFLGDIRNRSLPLMKFTLPALMVIWTLSMPYFWDNCHQPEVI AFPTSDRPSGIILMQQNGGNKQLLKASKEYGKTGVTEVKPRLDIAKYIYGYERENSLL SDVDILEAAVFSEDEIEVLFNQRWHFTAPDSLARVMNSLAIALIGSDSGIKVELDPLP FSTVHTLQLHLNSDGIDLIFASCLSFAFCFVWSIPLLFMTLSPEGRYNYIELIAGMRM SILILAFLIYDMVAVLLALFPVNLAVICLQWDLLMDTDVILLSTYVLVAIALCVLSVN ILISIGISDIHNGYLKLLVFYSLGIVAFIAVNELQITADRYVILLLILDFHPYYALLH NLMRIASISERIWLCRDGQIFETSVYSEQCLKTPNCCDASAREFPHFGYLWCIYLLTI LVWISIFVFLRSQLVKRRPRQSKYFWDSDPDGQYDQNVLHISQPNELEDTWIAEKIRV STLERNYIESKVLHVEHLSVFFNMRAAIKHIDFMINRYQVLSIFGANGSGKTVLLKTI LGIHSPSSGRIISSTGVPYKSHQLEGCHLMGYSGQEAQIFQTLTVGETIQLVLRIRRS SGESLREDARKLCKIFGLHKYRFQLLSLCSRGILKRLSIGLALMSDAELILLDDPFTH LDVIAQRTVLRVIHELSRLGHSVIYTCSDTEFSPSALRMAALSQQGIAAIGERREIQQ NYYSSYYVVETRIHMPELNEEQHQQEGGLKPFRVVQPDNEDRWRYLKLCGLIEKVFPH AIIKTVGPPKACFWLSSHMYFMPQIVKTLQMNKLNFYSFSISQPSVNSIFLTISPQKI YRKGFPY" misc_feature <515..4558 /gene="LOC108056743" /note="retinal-specific rim ABC transporter; Region: rim_protein; TIGR01257" /db_xref="CDD:130324" misc_feature 1427..2080 /gene="LOC108056743" /note="ATP-binding cassette domain of the lipid transporters, subfamily A; Region: ABC_subfamily_A; cd03263" /db_xref="CDD:213230" misc_feature 1523..1546 /gene="LOC108056743" /note="Walker A/P-loop; other site" /db_xref="CDD:213230" misc_feature order(1532..1537,1541..1549,1892..1897,1988..1990) /gene="LOC108056743" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213230" misc_feature 1820..1849 /gene="LOC108056743" /note="ABC transporter signature motif; other site" /db_xref="CDD:213230" misc_feature 1880..1897 /gene="LOC108056743" /note="Walker B; other site" /db_xref="CDD:213230" misc_feature 1904..1915 /gene="LOC108056743" /note="D-loop; other site" /db_xref="CDD:213230" misc_feature 1976..1996 /gene="LOC108056743" /note="H-loop/switch region; other site" /db_xref="CDD:213230" misc_feature 3848..4411 /gene="LOC108056743" /note="ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230" /db_xref="CDD:213197" misc_feature 3944..3967 /gene="LOC108056743" /note="Walker A/P-loop; other site" /db_xref="CDD:213197" misc_feature order(3953..3958,3962..3970,4088..4090,4316..4321) /gene="LOC108056743" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213197" misc_feature 4079..4090 /gene="LOC108056743" /note="Q-loop/lid; other site" /db_xref="CDD:213197" misc_feature order(4136..4138,4247..4273) /gene="LOC108056743" /note="ABC transporter signature motif; other site" /db_xref="CDD:213197" misc_feature 4304..4321 /gene="LOC108056743" /note="Walker B; other site" /db_xref="CDD:213197" misc_feature 4328..4339 /gene="LOC108056743" /note="D-loop; other site" /db_xref="CDD:213197" polyA_site 4927 /gene="LOC108056743" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attttctgtg cctcgaatga tcgaaatctg agagactact cgaaccggaa ggaagcgaag 61 gtattggagt tgaattggag tgcgcttgtc gagaagataa atgcgagacg caagaacatg 121 gtgaagaaac agaaagagta attttgagaa aaacgttttc ataccggaaa ttcgggtggc 181 cttcgccccc aattcgaatc cctcgctgcg aaaactcatc gatgctgcgc tggggaaact 241 ttccatcggc cgcgataaga ttgttgactt tcaaaattgc aacgatctgc ggacgcacgc 301 cgccggcgaa cactatttgg caagtgtctg cttccgcaat gcggatgagt caagaagtgg 361 cctgcccgcg gtgatgcatt tcgcgataat tatgccctcg gagctgcgga actacgagcg 421 cacttggatc ggcgacagct ggaaggagag cagcttcctg gtcgatcacg accatgaaca 481 tgatctctgg gaggcggagg acggccacac ggattatttg caagagggat tcgtggcgct 541 gcaatacttc attagcctgg aatatctaca aactgcctcc aaggcggaaa aattgccgac 601 aatccagatg cgtcgattcg acgagaatcc caatgtccta ctctccgacg gactggaacc 661 ctcggccata ctgctcatcc ttctcggctt catgttccca gtggctgtac tcattaagtt 721 gattgtggag gaacgcgagg ctggacagcg attcgtgctg gaggcgaata acgccagtgc 781 cacgttgcag gtggcggcct ggttcttcaa tgccttcttc cagttgctcc tggtctcgtt 841 tctcatggct ctcttactga agatccagtg gaacggaacg tcggcagcat tgaataagtg 901 cccctggtcg gtgctgctgc tctttctcat ctcctatggc ttctcggtga ccagttttgt 961 gatcttcaca gcggcggtgg tgcgcaaacc gaggacagca gtggtcgtgg ttccgatcct 1021 atggattcta ctgccccttc cctttctatc ggatgaggac ctgatctccg aggagtcaca 1081 cggtttctat gccgtggcca ccgctttaat ctgcaatgta tcttttagtc ggggcctcaa 1141 gaagttgatt tacctggaaa actatcccgt caaagtgccg tctagaaaat atctgatgta 1201 caaagtaatg gactgtgatt atggattgtg gatgcccatc gcatgcttct acttgcaggc 1261 cataaccttc gttctaaccg ccttgatgct ggaaaataat acctgtattt ggatggctcg 1321 tacttttggg aaaatgtgga aatgtaaatg tgctaggaac agaaacctaa acctgatggg 1381 atctgaaatc tcaggtgaac cggagaagga atcttcctct gcgcgcattg aatttcgtaa 1441 cgtatcgaaa aggttttcca aaaagtttgt ggttcggaat ttcaccttga gtatgcatcc 1501 cggcgaggtg gtggtcctac tgggtcacaa ttcatcgggc aagagaacga tcatcaagat 1561 ggcctatgga ttgatgaaac cctctgcggg agagatctac ctatccggat tcaacgtagt 1621 cactcacaaa aggctcgcac ttcgcagctg cggaatttcc ctgacttgca gcgctctctt 1681 ctccgagttc agcgtgtttg accatctggt attcttctgc cggctgcgag gactgcgaag 1741 atcggaagcc aaggaggagg tgcgggccta tagtcaccat ttgaagatcg aaaagtggca 1801 ggaggcaccg gtgaagcgat tgagcatcgg ccagaagagg ctcctcgtat cgctttgtgc 1861 cttcgtgggc cgcacacaga tcgtaatact cgacaaaccc ctcgatggcg tcgatgagcc 1921 caaggccaat ctgttcttcg actttgttca ggatcaaaag aagaatcgct ccattttcct 1981 gaccaccaat agtcccaagg tggccagcgg aattgccgat cgcattgcca ttctttcgcg 2041 gggcaaactc ttgtcatttg gaactgaaaa agggctgtgc cagaacttga atgaggccta 2101 cagattgact ctctatggca acgagcactg cgatttcaag gaggtgcaga tatttttgga 2161 aaactttgtt cccgacatcg agatggcctt caccttgggt gattcggctg tgttcctaat 2221 caagaataaa aaccaaacgg aattgattaa tttgctggag aatttgtcgc gattcaagga 2281 ggatctggag gtgtatagct atcaactgga ggaatgcagc ctggatgaca tcctctacaa 2341 actatttacc cgtgaccaat cgagttttga gtttggagac ttggaatccc acatatttcc 2401 cataatcagc cggcccagaa ggagatatat tgcgctgatc cagcatcttt gggaggttct 2461 tcgccaacgt ttcttgggag atattcgaaa ccgctctctg cccctgatga aattcactct 2521 gccggcattg atggtcatct ggacccttag catgccgtat ttctgggaca actgccatca 2581 accggaggtg attgcttttc ccacctccga tcgtccatcg ggcatcattc tgatgcaaca 2641 aaatggaggt aacaagcagc tattaaaagc ctccaaggag tacggcaaaa caggagtcac 2701 cgaagttaaa cctcggctag acattgccaa gtacatctat ggttatgaaa gggaaaacag 2761 tctgttgtcg gacgtggaca ttctggaggc ggccgtattt tccgaggacg agatcgaggt 2821 gctcttcaac cagcgatggc atttcacagc acccgatagc ttggcacggg tcatgaactc 2881 cctggcaatt gccctcatcg gttccgattc ggggatcaag gtggaactgg atccgctgcc 2941 cttctccacg gtccacacgc tgcaattgca tctgaacagc gatggcatcg acctgatctt 3001 cgccagctgc ctgagcttcg ccttctgctt tgtttggagc atcccgctgc tcttcatgac 3061 cctgagtccc gagggtcgtt acaactacat tgaactgatt gccggaatgc ggatgagcat 3121 cttgattctg gccttcctca tctacgacat ggttgccgtg ttgctcgccc tttttccggt 3181 aaacttggct gtcatttgcc tgcagtggga ccttctaatg gacaccgatg tcatcttgct 3241 ttccacctac gtcctggtgg ccattgccct ctgcgtgctc agcgtgaata tcctgatatc 3301 catcggcatc tcggacatcc acaatggcta tctgaagcta ctcgttttct attcactcgg 3361 cattgtggcc tttattgcgg tgaacgaact acaaatcacc gccgatcgtt atgtgattct 3421 cctgctcatc ctggacttcc atccgtatta tgcgctactc cataatctga tgaggattgc 3481 cagcatttcg gaaaggatat ggttgtgcag ggatgggcag atctttgaga ccagtgttta 3541 ctcggagcag tgcctcaaaa cgcccaactg ctgtgatgcc agtgctcggg agttccccca 3601 tttcgggtac ctttggtgta tttacctatt gaccatcctg gtgtggatct ctatattcgt 3661 tttcctccga tcgcaattgg tgaagcgcag gccacgacaa agcaaatact tttgggacag 3721 tgatccagat ggccaatatg accagaatgt tttgcacatt tcgcaaccga atgagctgga 3781 ggatacttgg atagccgaaa agatacgtgt tagcacactg gaacgtaatt atatagagag 3841 caaggtgctg catgtggagc atttgagcgt gtttttcaac atgagggcgg ccataaagca 3901 catagacttc atgatcaatc gctatcaagt tttgagcatt ttcggggcca atggaagtgg 3961 aaagactgtt ctgctgaaga ccatcttggg cattcactcg cccagctcgg gaaggataat 4021 aagctcgact ggggtgccgt acaagtcgca ccagctggag ggctgccatc tgatgggcta 4081 cagtggccag gaggcgcaga tctttcagac gctgaccgta ggggagacca tccagttggt 4141 gctccgcatc cggaggtcga gtggcgaatc tttgagggag gatgccagga aattgtgcaa 4201 gatattcggc ctgcacaagt atcgctttca attgctatcg ctctgcagtc gcggcatcct 4261 gaagcgactg agcattggcc tcgccctgat gagcgatgcc gagctcatcc tgctggacga 4321 tcccttcacc cacctggacg tcatcgccca gcgcaccgtg ctccgcgtca ttcatgagct 4381 gtcccgcctc ggccactcgg tgatctacac ctgctccgac accgagttct cgccctcggc 4441 cctgcgaatg gctgccctta gccagcaggg gatcgccgcc atcggggagc gtcgcgagat 4501 ccagcagaac tactactcat cgtactatgt cgtcgagacc cgcatccata tgcccgaact 4561 gaatgaggag cagcaccagc aggaaggtgg cttgaaacca tttcgagtcg tccagccgga 4621 caacgaggat cggtggaggt acctcaagct gtgcgggctc atcgaaaaag tatttcccca 4681 tgcaattatc aagactgtcg gaccgccgaa ggcctgtttc tggttgtcca gccatatgta 4741 cttcatgccc caaattgtca aaacgctcca gatgaacaag ctcaacttct actcattttc 4801 aatttcccag ccctcggtga attccatttt tctaaccatt agtccccaga aaatttatag 4861 aaagggattt ccctactaat aataaggctt tctaattcta taatatattg tgataaaaaa 4921 acaagaa