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LOCUS XM_070218449 6447 bp mRNA linear INV 09-DEC-2024 (Ptp4E), transcript variant X2, mRNA. ACCESSION XM_070218449 VERSION XM_070218449.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6447 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6447 /gene="Ptp4E" /note="Protein tyrosine phosphatase 4E; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108059141" CDS 330..5561 /gene="Ptp4E" /codon_start=1 /product="tyrosine-protein phosphatase 10D isoform X1" /protein_id="XP_070074550.1" /db_xref="GeneID:108059141" /translation="MDCATRKQQQLRAHHQQQQIQRQTHGRKRRRLQQQQQSHYYHHQ QHVWLVVGILTIFLTQHAQAADLVINVPNASSNDNAFYRIDYSPPFGFPEPNTTIPAS EIGKDIKFSRALPGTEYNFWLYYTNSTHQELLTWTVNITTAPDPPANLSVQLRSSKSA FITWRPPGTGRYSGFRIRVLGLTDLPFERSYSLDGNETLQLSAKELTPGGSYQVQAYS VYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPFPAGIYTHYRVSITPD DAIQSVLYVEREGEPPGPAQAAFKGLVPGREYNISVQTVSEDETSSVPTTARYLTVPE RVLNVTFDETYTTSSSFRVRWEPPRTYSEFDAYQVMLSTSRRIFNVPRAAEGESVHFD YPDVLEPGRSYEVVVKTIADNVNSWPASGEVTLRPRPVRSLGGFLDDRSNALHISWEP AETGKQDAYRISYHEQTNASEVPALFPVASESQITTNLTEYTLDSLLAGRRYLIAVQA LSKGVASNASDITRYTRPAAPLIQELKSIDHGLMLSWRSDVNSRQDRYEVHYQRNGTR EERTMATNETSLTIHYLHPGSGYEVKVHAISHGVRSEPHSYFQAVFPKPPQNLTLQTV HTNLVVLRWQPPEGSDFSEYVVRYRTDASPWQRISGLHENEARIEDMHYGERYLVQVN TVSFGIESPHPLELNVTMPPQPVSNVVPLVDSRNLTLEWPRPDGHVDFYTLKWWPTDE AERVEFKNVSQLEDLSSPSVRIPIEELSPGRQYRFEVQASSNGIRSGTTHLSTRTMPL IQSDVFIANAGHEQGQDETITLSYTPTPADSTRFDIYRFSMGDPKIKDKEKLANDTER KLSFSGLTPGKLYNVTVWTVSGGVASLPVQRLYRLHPLPINDLRALQVAAREITLHWE APAGEYTDFELQYLSADEEAPQLLQNVTKKTEISLQNLRPYHNYTFTVVVRAGSTPST DSDVSGSTLMRSSAPISASYQTLAAPPGKVDYFQPSDVQPGEVTFEWILEAGEQHGPI DNFRITCQNADDAADVASFEFPANATQGRISGLVPGNQYTFRIQAKSALGFGAEREHI QVMPILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDVGKNA SGLEMPSWQDVQAYTVWLPYQAIEPYNPFFTSNGSRRNALEAEHFTIGSSSCEKHQTG YCNGPLRAGTTYRIKVRAFTDEDKFTDTAYSSPITTERSDTVIVAATMAAVLLVAMVL LVVYCQHRCQLIRRASKLARMQDELAALPEGYVTPNRPVHVKDFAEHYRLMSADSDFR FSEEFEELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINA NYMPGHNSPREFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPV DRVAMFYGDIKVQLIIDTHFHDWSISEFMVSRNCESRIMRHFHFTTWPDFGVPEPPQS LVRFVRAFRDVIGTDMRPIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAM RKERVFMVQTEQQYVCIHQCLLAVLEGKEHLLADSLELHANDGYEVTKIYLERQPQTK MGTLPIRASLARAEELDADLMADKDLEQQQQQAEAKDENDEEDEDEEDDDQQPLNNET TATLSSASCSSSSQDVHVDLKDLQAKEHPKQEKESRKICSGTKSHSDTESDSEDEDEE GPVTKDGAVTDEDGWWY" misc_feature <588..>1310 /gene="Ptp4E" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(1038..1040,1239..1241,1284..1286) /gene="Ptp4E" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1047..1292 /gene="Ptp4E" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 1221..>2549 /gene="Ptp4E" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(1287..1292,1296..1301) /gene="Ptp4E" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 2433..2687 /gene="Ptp4E" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2433..2435,2634..2636,2679..2681) /gene="Ptp4E" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 3006..3257 /gene="Ptp4E" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(3324..3326,3522..3524,3567..3569) /gene="Ptp4E" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 3342..3581 /gene="Ptp4E" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature order(3570..3575,3579..3584) /gene="Ptp4E" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 3684..4046 /gene="Ptp4E" /note="TM proximal of protein tyrosine phosphatase, receptor type J; Region: PTP_tm; pfam18861" /db_xref="CDD:465889" misc_feature 4377..5042 /gene="Ptp4E" /note="catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar proteins; Region: R3-PTPc; cd14548" /db_xref="CDD:350396" ORIGIN 1 ccatcgacgt tttgccaccg ctatcacaca ttcgttgttt tttttttgca gtgcgcttcg 61 gtcttgtttt cgtgtccgtt ttcggcgctc cgttcagagt gcaatacaag tgcaatatta 121 attaagtaat aataaaaacc tacataaatg tataccgagt gcatatgtat gcgtgtgcaa 181 tacaaacgaa tgaccatgtt atagccatac aaaatataaa acaaaaacca taaaacacct 241 ccctcctccc ccctccccaa caaaaaaata aaagaaaaca aaaatctgcg aaaccttcga 301 caatcattga gttttactgt acttgaaaaa tggactgtgc cacgcgaaaa caacaacaat 361 tacgggcaca tcatcagcag caacaaatac aaaggcaaac acatggacga aagcggcggc 421 gattacaaca acaacagcaa agccactact accaccacca acaacacgtg tggcttgttg 481 ttgggatttt gacaattttt ttgactcagc atgcacaagc agccgatctg gtgattaatg 541 ttccaaatgc gagcagcaac gacaacgcct tctacaggat agactacagt ccgcccttcg 601 gcttcccgga gccgaacacc acgatcccgg ccagcgagat tggcaaggac atcaagttct 661 cgagagctct gccgggcacg gagtacaact tttggttgta ctacaccaat tccacgcatc 721 aggagctgct cacctggacg gtgaacataa cgacagctcc cgatccgccg gcgaacctga 781 gcgttcagct gcgctccagc aagagtgcct tcataacgtg gcgaccgccg ggaactggtc 841 gctattcggg attccggatc cgggtgctgg gcctcacgga tctgcccttc gagcgaagct 901 actcgctgga tggcaacgaa acgctgcagc tgtcggccaa ggaactcact cccgggggca 961 gctatcaggt tcaggcctac tccgtctatc agggcaagga atcggtggcc tatacgagtc 1021 gcaatttcac cacaaaaccc aacactccgg gcaagttcat cgtttggttc cggaacgaga 1081 ccacgctgct ggtgttgtgg caacccccct ttccggccgg aatctacacg cactacaggg 1141 tctccataac gccggacgat gccatccaga gtgttttgta cgtggaacgc gagggtgagc 1201 cacctggacc ggcgcaggca gccttcaagg gtctcgttcc cggcagggag tacaatatat 1261 cggtgcaaac ggtttccgag gatgagacgt catcggttcc gaccacagcc cgatatctga 1321 ccgtaccgga acgtgtcctc aatgtcacct tcgacgagac ctacacaaca tcgagttcct 1381 ttcgcgtgag atgggaacca ccgcgaacgt atagcgaatt cgatgcctac caggtgatgc 1441 tctcgacgtc gagaaggata ttcaacgttc cccgcgctgc ggaaggcgaa tcggttcact 1501 ttgactatcc cgatgtcttg gaacctggtc gcagctacga ggtggtggtc aaaacaatag 1561 cggataacgt gaactcctgg ccagccagcg gagaggttac gttgcgtcca cgacccgttc 1621 gcagtctggg tggattcctc gacgatcgca gcaatgctct gcacatttcc tgggagccgg 1681 cggaaacggg gaaacaggat gcctaccgaa taagctacca cgagcagacg aacgcaagtg 1741 aagtgccggc tctctttccg gttgccagtg aatcgcaaat taccacgaat ctcacggaat 1801 acacactgga ttccctgctg gcgggacgcc gttacctaat tgccgtgcaa gccctgtcca 1861 aaggagtggc ctccaatgcc agcgacatca cgcgatacac acgtccggcg gcgccactta 1921 tccaggaact caagagcatc gatcacggac taatgctcag ctggcgcagt gatgtgaact 1981 ctcgccagga tcgctacgag gtgcactacc agcgaaatgg aacgcgcgag gagcgcacaa 2041 tggccaccaa tgagacgagc ctgacgatcc actacctgca tcccggttcc ggttacgagg 2101 tgaaggtgca cgccattagc cacggcgtcc ggagcgaacc gcactcctac tttcaggcag 2161 tttttcccaa accgccgcag aatctcacgc tgcagacggt gcacacgaac ctggtggtgc 2221 tccgttggca gccgccggag ggcagcgact tcagcgagta cgtggtgcgc tatcgcacgg 2281 acgcctctcc ctggcagcgg atctccgggc tgcacgagaa cgaggcccgg atcgaggaca 2341 tgcactacgg cgaacgctac ctggtgcagg tgaacaccgt gagcttcggc atcgagagtc 2401 cccatcccct ggagctgaat gtgaccatgc cgccgcagcc ggtttcgaat gtggtgccgt 2461 tggtggactc gcgcaatctc accctcgaat ggccgagacc cgatggtcat gtggacttct 2521 acacactcaa gtggtggccc accgacgaag cggagcgagt ggaattcaag aatgtcagtc 2581 agctggagga tctgagctcc cccagcgttc ggattcccat tgaagagctg tcgccgggtc 2641 gtcagtatcg ctttgaggtg caggccagct cgaatggcat ccgttccggg accactcatc 2701 tctccactcg caccatgcca ctcattcaat ccgatgtgtt tatcgccaat gcgggacacg 2761 aacagggtca ggatgaaaca ataaccctaa gctacacacc cacgccggcg gacagcactc 2821 ggttcgatat ctaccgcttc tcgatgggcg atcccaagat caaggacaag gagaagctgg 2881 ccaacgatac ggaacgcaag ctgagcttct cgggcctgac gcccggcaag ctgtacaacg 2941 ttaccgtttg gacggtgagc ggaggagtgg ccagtttgcc ggtccaacgg ctgtatcgtc 3001 tgcatccact gcccatcaat gatttgcggg ctctccaggt ggctgctcgt gagataacct 3061 tgcattggga ggctccagct ggggaataca ccgattttga actgcagtac cttagtgccg 3121 acgaggaggc accgcaactg ctccagaatg tgaccaagaa gacggagatt tcgctgcaga 3181 acctgcgtcc gtatcacaat tacacattca ccgtggtggt gcgagctggt tccactccaa 3241 gtaccgattc cgatgtctcc ggcagcaccc taatgcgcag cagtgctccc atctcggcca 3301 gctatcaaac gttggctgct ccacctggaa aagtggacta cttccagccg agcgacgtgc 3361 agcccggcga ggtgaccttc gagtggattc tggaggcggg cgaacagcac ggacccattg 3421 ataactttcg catcacctgt cagaatgccg acgatgcagc ggatgtggca agcttcgaat 3481 tcccggcgaa tgcgacgcag ggcaggatta gtggcctagt gcccggcaat cagtacacat 3541 tccgcataca agccaagtct gccttgggct ttggtgccga aagggagcac atacaagtaa 3601 tgcccatact agcgccgcct gttccggaac ccagtgtcac gccgctggag gtcagcagaa 3661 cgagcagcac catcgagatt agcttcaggc agggctactt ctccaatgcc cacggcatgg 3721 tcagatccta cacgataatc atagccgagg atgtgggcaa gaatgcgtcg ggcctggaga 3781 tgcccagctg gcaggatgtg caggcatata ccgtgtggtt gccctaccag gccatcgagc 3841 catataatcc cttcttcacc agcaatggca gtcggcggaa cgcgctggag gcggagcact 3901 ttacgatagg atcgtccagt tgcgagaaac atcagacggg ctattgcaat ggtccgctaa 3961 gggctgggac cacctacagg atcaaggtgc gtgcctttac ggacgaggat aagttcacgg 4021 acacggccta cagttcaccg ataaccaccg aacgcagtga taccgtgatt gtggccgcca 4081 ccatggcggc tgtgttgctg gtggccatgg tgctgctggt ggtctactgc cagcaccgct 4141 gccaactgat ccgccgcgcc tccaagttgg cccgcatgca ggacgagctg gccgccctgc 4201 ccgagggcta tgtcacgccc aatcggccgg tgcatgtgaa ggatttcgcc gagcactaca 4261 gactcatgtc ggccgattcg gacttccgtt tcagcgagga gttcgaggag ctgaagcatg 4321 tgggccgcga tcaggcctgc agcttcgcca atctgccctg caatcggccg aagaatcgat 4381 tcaccaacat cctgccctac gatcactcgc gcttcaagct gcagcccgtg gacgatgacg 4441 atggttcgga ttatattaac gccaactata tgccgggaca caattcgccg cgcgagttca 4501 tcgtcaccca gggcccgttg cattcgacgc gcgaggagtt ctggcggatg tgctgggaga 4561 gcaactcgcg ggccatcgtt atgctgacgc ggtgcttcga gaagggtcgc gagaagtgcg 4621 atcagtactg gcccgtggat cgggtggcca tgttctacgg ggacattaag gtgcagttga 4681 ttatcgacac gcatttccac gactggagca tatcggagtt tatggtctca aggaactgcg 4741 agtcgcgaat aatgcggcac ttccacttca ccacatggcc ggactttgga gttcccgagc 4801 cgccgcaatc gctggtgcgc ttcgtgcgcg ccttccgcga tgtcatcggc acggatatgc 4861 ggcccattat cgtccattgc agcgccggag tgggcagatc gggcacattc atagccctgg 4921 atcgcatcct gcagcacatt cacaagtcgg actatgtgga catctttggc atcgtgtttg 4981 ccatgcgaaa agagcgcgtc ttcatggtgc agacggaaca gcagtacgtg tgcatccatc 5041 agtgtttgct ggcagtgctc gagggcaagg agcatctgct ggccgattcg ctggagctgc 5101 atgccaatga tggctacgaa gtgactaaaa tttacttaga gcgccagccg caaacgaaaa 5161 tgggaacctt gcccattcga gcttctttgg ccagggccga ggaactggat gcggatttaa 5221 tggccgacaa ggatctggag cagcagcagc agcaggcgga ggccaaggat gagaatgatg 5281 aagaggatga ggacgaggag gatgatgacc agcagccgtt gaacaatgaa acgactgcca 5341 ccttgtcatc ggccagctgc agcagcagca gtcaggatgt gcatgtggat ctcaaggatc 5401 tccaggccaa agaacacccc aagcaagaga aggagagcag gaaaatctgc agcggcacaa 5461 aatcccattc agacaccgaa agtgactcag aggatgagga tgaggagggg ccggtgacca 5521 aggatggggc tgtcaccgat gaggatggct ggtggtattg atagaaaagt cgactttttt 5581 ctagatgacg agggcattgc tgagacggga atctgaggat gcttgctgcg ggaatatcta 5641 cacatgatat atagtaccta tagttatttt ttttacatat actgtacgta aaatctgcct 5701 gtgatgtgct ggatgtgatt tgtctacgaa atggcactcg gagttgctgt caaatgagtt 5761 gagtttgtgg ccctcatccc gccgcaactg ccagccaaat catctgtcga ctggtggaga 5821 tgatggtggg atgaaggccc cgcgttttgg cctgtgccat ttatgcgtgt acgtcgtacc 5881 gcctgtttgc catagagcta agctagctag cccgcttatt taatgtaatg ccgccaaatt 5941 agaccaaacc aacaagagcg taaacttaag cttcaggtgt aataatctat tacctaattt 6001 tgtatctatt cctgtaccta ttatctatta ccttttgttc tgtcgtgttg tgtatagatt 6061 tgtacatttg tttccattta gtgtgcgcgt cgatcgatat tatgactatg cttactatta 6121 ctattattaa tattactatt actcttaacg attgtgtatt atttttatta ttattatata 6181 gtttagttat gttttatcga tagactttag tccattatta gtcagcgaaa tgttggctct 6241 aactgcatgc aaaccttcca tttgctttgg ggccatccat gtcttgaaac aaatacgaga 6301 ttccattgta tccggccaaa gcagcaatag caattgtaac attgtgcagt taaagttata 6361 agcatttatt ttattgtatt taattatttt atttttttaa atgtgcatct acacaagatc 6421 aataaattta tattgaaaac atgaaca