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LOCUS XM_070218396 4108 bp mRNA linear INV 09-DEC-2024 (LOC108055746), transcript variant X2, mRNA. ACCESSION XM_070218396 VERSION XM_070218396.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4108 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4108 /gene="LOC108055746" /note="uncharacterized LOC108055746; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108055746" CDS 578..3772 /gene="LOC108055746" /codon_start=1 /product="uncharacterized protein isoform X2" /protein_id="XP_070074497.1" /db_xref="GeneID:108055746" /translation="MSDIYYCSNSQMKKSRDADKSSAPLSATNTNANAANMAAADKKN NNNNCSNRNKEKSMQTNGKNWKGIVQSNPNPNGMGVGTTAQPPKVFHNTRCTRHHKPH HSHGNGTAASAGLGGLGGLGGGGGVPTSNGAALEATQQRERDRERERERDRDRERDRE REHHLHMHQHNHGLRRKSESVLSTDSDIRFTRRKLGDGQKCGCAVIAGFLIALLVAGV FVYVGYTYFRPEPLPDRVFRGRFMVLNDKWNMELANQNSMRFQHKARDYRERINLTLR RSDLREAFEGSEILALDGEDNNNIVVHFNMIFDPYAGLVSSGDLLALFHEEMTQPAQQ RRHFANMTVDVASLSIKETTGLIEEPVMSSSPLGGHDETTEPVVTTTPAPPRRCSPLE LTYCRQLGYNITTYPNLLGHASYAQLAEDVIVFRELVDGECHREAYDFVCRLLQPPCD THGSDLQPTPGQICREYCESFMAGCGGRLPQRFRQFFDCERFPESTGTQSCHQKPHCV SDMQSNVQSPRLCDGYADCPDLSDERSCAFCSPNALYCGRGRACVPRKARCDGKADCP DGADEKDCLSIAPLAADLLQPEPLVPYLSRFHAAGYAVFSEKGVVGKLCAEGLEGDAK LVVRQTVSESLCKSLGYESVEIFDVQNDTEQLSDYVRVLDPHAPEISFIRTHCPRRQV LYVGCGELRCGVQSALFNAKQHLSLPKMSAPGDWPWLVALFREDIHVCDGTLISQDWV LTTEGCFQGQPRATWMAIVGAVRLSAKAPWTQRRRIIGMIKSPVEGSTAALVRLETSV SYSDHVRPICLPDALQRRLLQQPPAQRRSHVPVAERLEGQHLQQHRSRLAQENQQFFL IPSQEQLDSSTENREGVEGEEEQEQDDHFGAQAAASYMPKAEALHQELDAYPLPDHAP QVNYYSSSSTVTSSSLTARTKAATKAPLLPAVPAAQEQIWTNCNTLGWSRQRDHLQRV QLKMGDMAPCENVSIATVNSMCMEATYQKYDCTQEEYSGAPVQCLIPGTNQWALIGVS SWRIACGPTGVERPRMYDKIASNAAWIRETISAI" misc_feature 1283..>1513 /gene="LOC108055746" /note="SEA domain; Region: SEA; pfam01390" /db_xref="CDD:460188" misc_feature 1736..2092 /gene="LOC108055746" /note="CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain; Region: CRD_FZ; cd07066" /db_xref="CDD:143549" misc_feature order(1760..1762,1766..1771,1778..1786) /gene="LOC108055746" /note="putative Wnt binding site [polypeptide binding]; other site" /db_xref="CDD:143549" misc_feature <2093..>2332 /gene="LOC108055746" /note="Glucosidase II beta subunit-like; Region: PRKCSH-like; pfam12999" /db_xref="CDD:372423" misc_feature 2192..2299 /gene="LOC108055746" /note="Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about...; Region: LDLa; cd00112" /db_xref="CDD:238060" misc_feature order(2207..2209,2234..2236,2267..2272) /gene="LOC108055746" /note="putative binding surface [active]" /db_xref="CDD:238060" misc_feature order(2246..2248,2255..2257,2267..2269,2285..2290) /gene="LOC108055746" /note="calcium-binding site [ion binding]; other site" /db_xref="CDD:238060" misc_feature 2276..2290 /gene="LOC108055746" /note="D-X-S-D-E motif; other site" /db_xref="CDD:238060" misc_feature 2708..>3013 /gene="LOC108055746" /note="Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl21584" /db_xref="CDD:473915" polyA_site 4108 /gene="LOC108055746" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatcatatca tatcgtatat agcttatatc tgaatataac cgaaagaaag gtgcgcgcat 61 gcgcatggaa agctgcaaaa gcgggaaaag cggcaaaagc gagtggtgtg ttctgcaaga 121 cggagcgtga agtgcggcat tgtttgcatt ttatttttca gtttgcattt tgttttgttt 181 ttgtttttgt attgtgtttg cctaaatatg cggataaata tgcggaaaac ctaatctggc 241 caaaaatcgt aacaataagc gacgtcaact ggctaagcat atcgattaca tcgagcgttt 301 gtacatatgt gacacttttc cgcggcgcaa aaacaggttg ccattacggc cattaactac 361 tggccataag ccacctaggg cacctggttc acctgttggc cagttcacct ggatccctgg 421 atcgcctctt ttccatttcg gatttttcaa taaagaaagc gcggagaaaa gctgataggt 481 ctgcgcgaaa ggagcgaatc cgcgacagcg gagcaggcgg agggcagcga tccagtccgc 541 tccaagatcc ctcatccaac cctgatcgag aaccaggatg tcggacatct actactgcag 601 caacagccag atgaaaaaat cgcgcgacgc ggataaatca tccgccccgt tgtcggccac 661 caataccaat gcaaatgctg ccaatatggc ggccgctgat aagaagaaca acaacaacaa 721 ctgcagcaat cgcaacaaag agaagagcat gcagacgaac ggtaaaaatt ggaagggcat 781 tgtccagagc aatcccaatc caaatggaat gggcgtgggc accaccgccc agccgccgaa 841 ggttttccac aacacccgat gcacgaggca ccacaaaccg caccacagtc acggcaatgg 901 aacggcagct tccgcgggat tgggaggatt gggtggttta ggaggcggcg gaggagtgcc 961 cacctccaat ggagcagcac tggaggccac acagcagcgg gaaagagaca gggaaaggga 1021 aagggaaaga gacagagatc gggaaagaga cagagagcgg gaacatcacc ttcacatgca 1081 ccagcacaac catggcctgc gcagaaaatc cgagtccgtc ctgtccaccg actcggatat 1141 ccgcttcacc cgccggaaac tgggcgatgg ccaaaagtgc ggatgcgccg tcatcgccgg 1201 attcctaatc gccctcctcg tcgccggagt ctttgtctat gtgggatata cctatttccg 1261 gcccgaaccg ctgccggatc gcgtctttcg cggccggttc atggtgctca acgacaagtg 1321 gaacatggag ctggccaacc agaactcgat gcggttccag cacaaggccc gcgactaccg 1381 ggagcgcatc aatctcaccc tgcggcgatc cgacctgcgg gaggccttcg agggcagcga 1441 gatcttggca ctggatggcg aggacaacaa caacatagtc gtgcacttca acatgatctt 1501 cgatccgtac gccggtctgg tgagcagcgg cgacctgctg gccctcttcc acgaggagat 1561 gacccagccg gcgcagcagc ggcgccactt cgccaacatg accgtggacg tggcgagtct 1621 gagcatcaag gagacgaccg ggctgatcga ggagcccgtg atgtccagct ccccgctggg 1681 cggtcacgac gagaccaccg agccggtggt gaccaccacc ccggctccgc cgcgtcgctg 1741 ctcgccgctg gagctgacct actgccgcca gctgggctac aacatcacca cctatccgaa 1801 tctcctcggc cacgccagct acgcccagct ggcggaggat gtgatcgtgt tccgggaact 1861 ggtggacggg gagtgccatc gcgaggccta cgacttcgtg tgccgcctgc tccagccgcc 1921 ctgcgacacc cacggctccg atctgcagcc cactcccggc cagatctgcc gcgagtactg 1981 cgagtccttc atggccggat gcggcggtcg gctgccgcag cgcttccgcc agttcttcga 2041 ctgcgaacgc ttcccggagt ccacgggcac ccagtcgtgc caccagaagc cccactgcgt 2101 cagcgacatg cagtccaatg tccagagtcc gcgtctctgc gacggctatg ccgactgccc 2161 tgacctctcc gacgagcgca gctgcgcctt ctgctcgccc aacgccctct actgtgggcg 2221 tggccgggcc tgtgtgccgc gcaaggcgcg atgcgacggc aaggcggact gcccggatgg 2281 cgccgacgag aaggattgct tatccatagc cccgctggcg gccgatctgc tgcagccgga 2341 gcccctggtt ccgtacctct cccgcttcca tgccgccggc tacgcggtct tctccgaaaa 2401 gggggtggtg ggcaagctgt gcgccgaggg tctcgagggc gatgccaagc tggtggtgcg 2461 ccaaacggtc tccgagtcgc tgtgcaagtc cctgggctac gaatccgtgg agatcttcga 2521 tgtgcagaac gacacggagc agctgagcga ctacgtgcgt gttttggatc cccatgcccc 2581 cgagatcagc ttcatccgga cgcactgccc ccggcggcag gtgctctacg tgggctgcgg 2641 ggagctgcgc tgcggcgtcc agtcggcgct cttcaatgcc aagcagcatt tgtcgctgcc 2701 caagatgtcg gctccggggg attggccctg gctggtggcc ctcttccgcg aggacatcca 2761 cgtctgcgac ggcacgttga tctcgcagga ctgggtcctc accaccgagg gctgtttcca 2821 gggccagccg cgtgccacct ggatggccat cgtgggcgcc gtccgtctgt ctgccaaagc 2881 tccctggacg cagcggcgtc gcatcatcgg catgatcaag agtccggtgg agggctccac 2941 ggcggccctg gttcgcctgg agacctcggt cagctactcg gatcatgtgc gtcccatttg 3001 cctgccggat gctctgcagc gacgcctcct ccagcagccg ccggcccaaa ggagatctca 3061 tgtcccggtg gccgagcgac tggagggaca gcatctgcag cagcatcgca gtcgcttggc 3121 ccaggagaac cagcagttct tcttgattcc ctcgcaggag cagctggaca gctccacgga 3181 gaaccgagag ggggtggagg gggaggagga acaggaacag gatgatcact ttggagccca 3241 ggcagccgcc tcgtatatgc ccaaggcgga ggctctgcac caggaactgg atgcctatcc 3301 cctgccggat catgcgccgc aggttaacta ctacagctcc tcctccaccg tcacatcctc 3361 ctccttgacc gcccgcacaa aggccgccac caaggcgccc cttctgccgg ctgttccggc 3421 tgcccaggag cagatctgga cgaactgcaa tacgctgggt tggtcccggc agcgggatca 3481 cctgcagcgc gtccagctga agatgggcga catggcgccc tgcgagaacg tgtccatcgc 3541 caccgtgaac tccatgtgca tggaagccac ctaccagaag tacgactgca cgcaagagga 3601 gtactcggga gcacccgtcc agtgcctgat accgggcacg aatcaatggg ccctgatcgg 3661 agtctcgtcc tggcggatcg cctgcggacc aacgggcgtg gagcggccca ggatgtacga 3721 caagatcgcc tcgaatgccg cctggatccg cgagacgatc agcgcgatat agtcggcata 3781 gtccccgggg gcggcgacac gcccctccct cagcatttgt gtagaaaacg gaaccgaact 3841 cactgggtat tatgtgtgta gcaaagcaaa gcgaccaatt aagcatatgt aactaacctg 3901 ctctaatgtt actcgaacct aaccctacgc taactattaa ctataactat taaacgtcct 3961 tttttttgct gttttgtgta atatttatta actatgttgt aattgtatgt taaacatgtc 4021 gaaaaggaag caaatttagt tgttagttat tacgtttagt tgtttgtaga aagatattgt 4081 tgaataaaat gaaatcgtct aaagtttg