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LOCUS XM_070218390 6056 bp mRNA linear INV 09-DEC-2024 (LOC108067704), transcript variant X4, mRNA. ACCESSION XM_070218390 VERSION XM_070218390.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6056 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6056 /gene="LOC108067704" /note="uncharacterized LOC108067704; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108067704" CDS 394..3939 /gene="LOC108067704" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_070074491.1" /db_xref="GeneID:108067704" /translation="MESDEQQQEVVGGSAPLCRICITTHHQQPNNNTNNTTASPANLP MIPIFGEDALWQKITTLANVKISKNDTLPQQVCVACAKSAISACVFKKKCEEADHFYR QQLRLQKIEGADPLETSASAGDQAKSSGCSSGSGSSSASGSGSGSSSSSSSSSDDEDE DNDQDQEQDQEQELDEVEAGEAGHKRLQNGYSPVINGHRGDGVQEEELMDDHHHAAGH EEEEQDEQDHHRNGLELAEVNPEDEDDDDVEEVNPMNHHHHHHDNNDDDGEITGHAGH PKEPFDFNSIRLMQEYMQHQMNKFPNGSAAGGHPDMELDLDQQQHHHHHHDDDDEDMS LPLIPEIELITPGDEAPADASNHNDLDLVNGVGVGVGVVQGMRGPGFQCPHCYQIFEM KQILKAHMQSVHGAPGPVYECSNCRKTYFYKRFLEKHIRRGRCVKKRRNQTRPMQCSD CHVLFPTGHHLGWHKRTGCPSKAAKMPLQQLFKQNIVQFNNFPKRIAAGGGGGGGGGA ARKPTAPELHINNRKLGLANKRKGRTRIKLDAKKIALAKQLILREATTTVIANELNIS RTFAWRLRKSLVNGVSLHERVVDPSQEEQHLQQLQQQQHHHHQQLQLQQQEEQQQQQR EREQHHLSSLPYSHLGLGLIKEERQDSEDEEQQQQQRQHHHHSLGLVDECGADEIGAE ETAGYMGDEDAVSGLLHNGGYDPDPDSDPIEHDPFEGTENHEHPANGSVSPAAKLVPP SGVPVPVPVQVHAAAAAAAAARSDVEVYKRLLAESQHFPHIVNAQQLQMQQQHRERER EQRDRERAREREREREQLQQQQKVHNGGMPMLTRYPPAVMHALPVNLSLRSMPPHMNS NESNGSSSSNTAAPVPVPVAGSSAATSTGATPTGKKPRKPNVFIDDEKYAMAKLLVAQ NSSTMEIARALNVSQMTAWKVRDAILKGVPLSYRNKRSDGRHSEEFSVKEQQQQQQQQ QEQQQRQQEMQRQQQQQMEQMELIKQQRQQQELLLQQQQQQQQQQQQQQQQQQQQLRH HSTPADTSHYQQQAAPKMLHPRRRLKAAERELRDKEITREILELIKEDSNIQYWKVSA RLAEKGINISPSSVCQKLKSMGIHRRWKPGDKPPMLAISQLKAATVAAAAAAAGLAGV GGSAGLAGNSFGLADDGYEQQQFDMGGHFLSAFTR" misc_feature 442..702 /gene="LOC108067704" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature 1540..1605 /gene="LOC108067704" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1555..1557,1561..1563,1567..1569,1573..1578, 1585..1590,1597..1599,1645..1647,1651..1653,1663..1668, 1675..1680,1750..1752,1756..1758,1762..1764,1768..1773, 1780..1785,1792..1794) /gene="LOC108067704" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1630..1686 /gene="LOC108067704" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1735..1794 /gene="LOC108067704" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6056 /gene="LOC108067704" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgttggggtt cgttttaagt ttaccaaacg tcgtcggtac aatcggaacg ttccgttcct 61 gcgtttcagt tcttcctttc cgttcgttcc gcgcgctcct ctctcgcgtg agagagagtg 121 ctgccacttg ttgccggctc ggcttgggga cactctctct tcccattcca tcattccatc 181 gaagcacgga tacgataacg ctaccgattg atccaatccg atcggatccg atctgttcga 241 tccacatcca cccactaccg gcggagattt ggaagcagta gacgcctgaa ccattggaag 301 aggcatgcag ttgatggcca gcggttactc ctgcagcagc tccatctcct tcagatcctt 361 cagttccagt tccctccggt ccaaactctc gcgatggaga gcgatgaaca gcagcaggag 421 gttgtgggcg gaagtgcacc gttatgtcgc atctgcatca ccacccacca tcagcagccg 481 aacaacaaca ccaacaacac gacagcatcc ccagccaacc tgccaatgat acccatcttc 541 ggggaggatg cgctctggca gaagattacc acgctggcca acgtcaagat cagcaagaac 601 gacactctac cgcaacaggt gtgcgtcgcc tgtgccaagt cggctatttc ggcctgcgtg 661 ttcaagaaga agtgcgagga ggcggaccat ttttaccgcc agcaactgag gctccagaag 721 atcgagggcg cggatccgct ggagacgagc gcctccgccg gcgaccaggc caaaagcagc 781 ggctgcagca gcggcagcgg gagcagcagc gccagcggca gtggcagcgg cagttcctcc 841 agcagcagtt cctcctccga cgacgaggac gaggacaatg atcaggatca agagcaggat 901 caggaacagg aactggatga agtggaggcc ggggaggctg gccacaagcg gctgcagaat 961 ggctacagcc cggttatcaa tggccatcga ggtgatggcg ttcaggagga ggagctgatg 1021 gatgaccatc atcacgcagc tggccacgaa gaggaggaac aggatgagca ggatcaccat 1081 cgcaatgggc tggagttggc ggaggtaaat cccgaggatg aggacgatga cgacgtggag 1141 gaggtaaatc caatgaacca ccaccatcac caccacgata ataacgacga cgatggcgaa 1201 ataaccggcc atgccgggca tcccaaggaa ccgttcgact tcaactcgat tcgcctgatg 1261 caggagtaca tgcagcatca gatgaacaag ttccccaatg gctccgccgc cggtggtcac 1321 ccggatatgg agctcgatct cgaccagcag cagcatcatc atcatcatca tgatgacgat 1381 gacgaggaca tgtcgctgcc gctgataccc gagatcgagt tgatcacacc gggcgatgag 1441 gcgccagcgg atgcctcgaa tcacaatgac ttggacttgg tcaatggcgt gggcgtgggt 1501 gtgggcgtgg tccaggggat gcggggaccg ggcttccagt gcccccactg ctatcagatc 1561 ttcgagatga agcagatcct caaggcgcac atgcagagtg tccatggagc accgggaccg 1621 gtgtacgagt gcagcaactg ccgcaagacc tatttctaca agcgtttcct cgagaagcac 1681 atacgacgtg gtcgctgtgt gaagaagcgt cgcaatcaaa ctcggcccat gcagtgctcc 1741 gattgtcatg tcctcttccc cacgggccac catttgggct ggcataagcg caccggctgc 1801 ccctcgaagg cggccaaaat gcccctgcag cagcttttca agcagaacat tgtgcagttc 1861 aacaatttcc ccaagcggat tgccgccggc ggaggaggag gaggaggagg gggagcggca 1921 cgcaaaccaa cggctcccga gctgcacatc aacaatcgca aactgggctt ggccaacaag 1981 cgaaagggac gcactcgcat caagctggac gccaagaaga ttgccctggc caagcagttg 2041 atactgcgcg aggccaccac cacggtgatt gccaacgagc tgaacatctc gcgcaccttc 2101 gcctggcgcc tgcgcaaaag cctggtcaac ggtgtcagtc tgcatgagcg cgtcgtggat 2161 ccctcgcagg aggagcagca cctgcaacag ctgcagcagc agcagcatca tcaccatcag 2221 cagttgcaat tgcagcagca ggaggaacag caacagcagc aacgcgaacg ggaacaacat 2281 cacttgagca gccttcccta cagccacctt ggcctgggtc tcatcaaaga ggagcggcag 2341 gacagcgagg atgaggagca gcagcagcag cagcggcagc atcaccatca ctcgctcggt 2401 ctggtggacg agtgcggagc ggatgagatt ggggccgagg aaacggctgg ctatatgggc 2461 gatgaggatg ccgtgagcgg cctgctccac aatggaggct acgacccgga tcccgattcc 2521 gatcccatcg agcacgatcc cttcgagggc accgagaacc atgagcatcc tgcgaacggt 2581 tcggtttcgc ccgcagcgaa acttgtgccg ccatcggggg ttccggtacc ggtgcctgtt 2641 caggtccatg ctgctgccgc cgccgccgcc gccgctcgga gcgatgtgga ggtctacaag 2701 cggctgctgg ccgagtcgca gcactttccc cacatcgtca acgcccagca gttgcagatg 2761 cagcagcagc accgcgagcg ggagagggag cagcgggatc gcgagcgggc aagggaaagg 2821 gagagggaaa gggagcaact gcagcagcag cagaaggtcc acaacggtgg aatgccgatg 2881 ctcactcgtt atccgcccgc cgtcatgcac gccctgcccg tcaacctgtc cctgcgctcc 2941 atgccccccc acatgaatag caacgagagc aacggcagct ccagcagcaa cacggcggcc 3001 ccagttcccg ttcctgttgc cggctcatcg gcagccacct cgactggcgc cacgccgact 3061 ggcaagaagc cccgcaagcc gaacgttttc atcgacgacg agaagtacgc catggccaag 3121 ttgttggtgg cccagaactc ctccaccatg gagatagcca gggccctcaa tgtatcccaa 3181 atgacggcct ggaaggtgcg cgatgccatt ctcaagggag tgccgctctc ctatcgcaac 3241 aagcgatccg atggcaggca ttcggaggag tttagcgtca aggagcagca gcagcaacag 3301 cagcaacaac aggagcaaca gcaacgccaa caggagatgc agcgacagca gcaacagcaa 3361 atggaacaaa tggagctaat caaacagcag cgtcagcaac aggagttgct actccagcag 3421 cagcagcaac agcaacagca gcagcaacaa cagcagcagc agcagcaaca acaactgcgt 3481 catcacagca caccggcgga cacatcacac tatcagcaac aggcggcgcc aaagatgctg 3541 catcctcgcc gccgcctaaa agcagcggaa cgcgagctgc gcgacaagga gatcacacgc 3601 gaaatactcg agctgatcaa ggaggacagc aatatacagt actggaaggt gtcggctcgc 3661 ctggccgaga agggcatcaa tatatcgccc tcgtccgtct gccagaagct caagtcgatg 3721 ggcatccacc ggcgctggaa gccgggcgac aagccaccca tgctggcgat aagtcagctc 3781 aaagcggcca ctgtggcggc cgcagcggcg gcagctggcc tggccggcgt cggcggaagc 3841 gccggattgg ccggcaacag ctttggcctg gcagacgacg gctacgagca gcagcagttc 3901 gacatgggcg ggcactttct cagtgccttt acgcgctaga ccagaagtcc tgcccatctg 3961 ggcctacatt taaatactac agtggattgt aggcatcgta ggcatcattt gactgggaaa 4021 ttgtaggtct aaagagctga gttttaagtt attgaagcct ttgagggttg attttggttt 4081 aagatacatt tcttttatga acaaaattat aagtagccaa tataaaaata attctactcg 4141 gcagctgttt agttttatgt tgaatgtcat tgagaaattc attgcagatc taccatttcc 4201 caggcgaaat gcctagaaat ttgcccacaa ttaccactgt gagtttaaca tatatacatt 4261 tttgtttttc gagccaccct aatccatatg catagaccag cacagcaaca acaaggtgta 4321 ttttttatat agtatttgaa agagagagag cgcgcttgaa atgtatttgt atttgtaatc 4381 gttatgagat agcatatatt gtatgattct gtattagatt tatatatcca atatatatgc 4441 taagcattcc tagaatgtca cacacacaca cacaaagaaa atgaaaaaga aaaacgccca 4501 ttccaagcga ggaaatgatt tcctttcttt aagttcagta gcttcctttt cctcttcctc 4561 catccacaca cacacacaca aacacactta gctgataatg taataattta attaacatat 4621 ttattgatcg tatgtccttg tgagtgtgtg tgtgtgcgct ttaactgaga aatgtattta 4681 aagattttca ccatttttaa tttatttatt ttactcacgc atacacacac acacacatat 4741 aagcaattat tcagtactga actttaattt agttaaatta atgcatcaaa cgaagaaata 4801 acaatcagaa caaagcaaac ggaagcagaa caaacagcag ctagagagaa agttaagaaa 4861 gctagcaaca taagtgcaat tataaactac atgtgtaaac ctaaagaacc agaagaatgt 4921 aaaatgtttt acgtgtgacc gaaatagaag ataggagagc gagagaaggg gagaaagaga 4981 gggaaaattg tctatccaat ttaagacctt agcaccactg aacattttag aaccaacttt 5041 catatcttca gatatcctaa actaaaagat atcttcattt taaaacgcta actgatgaaa 5101 aacttgtgtt ttttggttaa aagtgtagaa agaaatgttc aaatttaaaa taagtttagg 5161 tcaattaaaa caacatttag tttttacttt agaacgactt ttatacattc ccaaagacat 5221 accaaaattt tgtttagcac tataaacagg ctgaaaatcg aaacatcacc cacaaaaagt 5281 ttgttttttg tgtgtgttta cagtggtgtt gagccattag ttaataactt tgattgggag 5341 aaccaattta aggtttacac ttcactcccc aactttcctc ctcttctttc tcctggtcgt 5401 tttccatata gacagctact ccgaatccat cctcccaacc aagccccaat ttatgtaaga 5461 aagctatgga aacaaggcaa acgatcaatt tttgaaaacg tcgtagcaaa ttgttagtta 5521 aaaatgagaa gaaaactaaa taacacaaaa gatcaaaaga aaaaagatgg aaaaatatga 5581 agacaagctg aggactcaga actgtattta tttacagtca attttaggaa catttatttt 5641 attattatta tttttttgtt gttgtggatg aaattctatt cgtctgcgat ttatttttgt 5701 atagctttta aggtccgaag ttagagcaaa agagatagca agagagagcg agtgaaggtt 5761 gatatagtat tttttttata tttttgtaca atttgaaatt gtaactgctt tttatcaatc 5821 aatcaatgaa tgattccctc cctccaccaa cccacacaca cacacataca cacgcatact 5881 gtgcaaagta ttttctatat tcattacata taaatatatc catatataac taaactaaat 5941 ttataaaata gttttttttt gttttttttt tttacatcat atatatattt agccgcagct 6001 tataaaatag atttaaaaat aaaaaatgat tacaattttt ttgtatgaaa tgcaaa