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LOCUS XM_070218386 2879 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X15, mRNA. ACCESSION XM_070218386 VERSION XM_070218386.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2879 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2879 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2131 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X15" /protein_id="XP_070074487.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYDDEESSLQNL DNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSED FKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKN RCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMS TCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAAAHTHPVYCLQMVGTQNA HNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSED GYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSL KDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAG APALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKLNQSD EV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1085..2035 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1088..1225 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1127..1129,1169..1171,1187..1192,1220..1225, 1289..1291,1301..1303,1319..1324,1376..1381,1436..1438, 1451..1453,1469..1474,1559..1561,1610..1612,1625..1627, 1661..1666,1736..1738,1748..1750,1766..1771,1805..1810, 1862..1864,1877..1879,1895..1900,1943..1948,2000..2002, 2012..2014,2030..2035) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1256..1372 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1394..1513 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1541..1684 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1706..1804 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1820..1936 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1958..2038 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2879 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ctcatgctac ggattattat gacgacgaag agagctcgct 721 gcagaacctg gacaatggat tcacctccaa gctgccaccg ggctatctca cccacggcct 781 gcccaccgtc aaggacgtcg ccccggccat cacgcccctc gagatcaaga aggagaccga 841 ggtgaagaag gaggtgaacg agctatccga ggagcagaag cagatgatca tcctgtcgga 901 ggacttcaag cggttcgtgg tgcgcgccgg ccgcgtcatc gagcgggcgc tctcggagaa 961 cgtggacatt tacacggact acatcggcgg cggcgacagc gaggaggcga acgacgagcg 1021 ttcgcatgcc cgcctgtcgc tcaatcgcgt cttctacgac gaacgctggt cgaagaaccg 1081 ctgcatcacc agcatggact ggtccacaca cttcccggag ctggtggtgg cctcgtatca 1141 caacaacgag gagagtccca acgagccgga cggcgtggtg atggtttgga acaccaaatt 1201 caagaagagc acgcccgagg atgtcttcca ctgtcagagc gcggtgatgt ccacgtgctt 1261 tgccaaattc aatcccaatc tgattctcgg cggcacctat tcgggccaaa ttgtgctgtg 1321 ggacaatcgc gtggccaagc gcacgcccat ccagcgaact cctttgagtg ccgcggcgca 1381 cacgcatccc gtttattgcc tgcaaatggt tggcacccaa aatgcgcaca acgtcatctc 1441 catatcgtcg gacggcaagc tgtgctcctg gtcgctggac atgctgtcgc agccgcagga 1501 taccctggag ttgcagcagc gccaatcgaa ggccattgcc atcacatcga tggcctttcc 1561 ggccaacgag atcaacagtc tggtgatggg cagcgaggat ggctatgttt actccgcctc 1621 gcgtcacggc ctgcgttctg gagtcaatga ggtgtacgaa cggcatttgg gccccatcac 1681 gggtatatcc acgcactaca accagctgtc gccggacttt ggccacctct tcctcacctc 1741 ctcgattgac tggaccatta agctgtggtc gctcaaggac acaaagccgc tgtattcgtt 1801 cgaggacaat tcggactatg tgatggacgt cgcctggtcg ccggtgcatc ccgcgctctt 1861 tgccgccgtc gacggaagcg gacgcctgga cctgtggaac ctcaaccagg acacggaggt 1921 gcccacagcc tcgatcgttg tggccggcgc tccggccctg aatcgcgtct cctggacgcc 1981 gtctggcctg catgtctgca tcggcgacga ggccggcaag ctgtacgttt acgatgtggc 2041 cgagaatctg gcgcagccgt cgcgcgacga atggtcgcgg tttaataccc atcttagcga 2101 gatcaagctc aaccagagcg acgaggtcta ggacaatagt tgttaactgg tagttaatag 2161 tcgatacgga atcctggaag gagcgtcctt gaatgaaatt taattttgta ttttttgtat 2221 cttttgtgat cccactgctc cttagttgtg tatagcccat aactcgaaac tcatccgcag 2281 tccaaatgct cagaaacttc accctttccc ccccaaaaaa acaaagaaat caagggaaac 2341 tgcaacattc tctaggcaac cacacagtaa ctgtattaga aggtttattt aatgaaactc 2401 gacagaatat agagatatat atatacatga gcagtggaag aagaactaga agttgctctc 2461 cccgcatgtt tgattggcat attcattaat ttgttattag atattttccc ccaggtccat 2521 tcccattttc aatcgataat ggcaatggat ctgccgaatg ggatttatta ttttgtaatt 2581 ttattttgtg gaactaaaaa gattgaagca tgatcattta accgactgtc gggcaggctg 2641 agagcaacac ataaataaat taaaaatgct acatattata tacaacaacg tattaagctt 2701 aaacctgaga agaagaaaga cagagactaa gaaggtcgga caggaaaaaa aaacgggggc 2761 tcaggaatga gagcacgaaa ggcactgaag atcgaccgaa agagcccaaa atgtaaatgt 2821 attagagcga agcctattta acgagattaa ataaacataa tatctatata cacatacaa