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LOCUS XM_070218385 2882 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X14, mRNA. ACCESSION XM_070218385 VERSION XM_070218385.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2882 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2882 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2134 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X14" /protein_id="XP_070074486.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDAHATDYYGDDEESSLQN LDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSE DFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSK NRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVM STCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLSAAAHTHPVYCLQMVGTQN AHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSE DGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWS LKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVA GAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKLNQS DEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1088..2038 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1091..1228 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1130..1132,1172..1174,1190..1195,1223..1228, 1292..1294,1304..1306,1322..1327,1379..1384,1439..1441, 1454..1456,1472..1477,1562..1564,1613..1615,1628..1630, 1664..1669,1739..1741,1751..1753,1769..1774,1808..1813, 1865..1867,1880..1882,1898..1903,1946..1951,2003..2005, 2015..2017,2033..2038) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1259..1375 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1397..1516 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1544..1687 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1709..1807 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1823..1939 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1961..2041 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2882 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ctcatgctac ggattattat ggagacgacg aagagagctc 721 gctgcagaac ctggacaatg gattcacctc caagctgcca ccgggctatc tcacccacgg 781 cctgcccacc gtcaaggacg tcgccccggc catcacgccc ctcgagatca agaaggagac 841 cgaggtgaag aaggaggtga acgagctatc cgaggagcag aagcagatga tcatcctgtc 901 ggaggacttc aagcggttcg tggtgcgcgc cggccgcgtc atcgagcggg cgctctcgga 961 gaacgtggac atttacacgg actacatcgg cggcggcgac agcgaggagg cgaacgacga 1021 gcgttcgcat gcccgcctgt cgctcaatcg cgtcttctac gacgaacgct ggtcgaagaa 1081 ccgctgcatc accagcatgg actggtccac acacttcccg gagctggtgg tggcctcgta 1141 tcacaacaac gaggagagtc ccaacgagcc ggacggcgtg gtgatggttt ggaacaccaa 1201 attcaagaag agcacgcccg aggatgtctt ccactgtcag agcgcggtga tgtccacgtg 1261 ctttgccaaa ttcaatccca atctgattct cggcggcacc tattcgggcc aaattgtgct 1321 gtgggacaat cgcgtggcca agcgcacgcc catccagcga actcctttga gtgccgcggc 1381 gcacacgcat cccgtttatt gcctgcaaat ggttggcacc caaaatgcgc acaacgtcat 1441 ctccatatcg tcggacggca agctgtgctc ctggtcgctg gacatgctgt cgcagccgca 1501 ggataccctg gagttgcagc agcgccaatc gaaggccatt gccatcacat cgatggcctt 1561 tccggccaac gagatcaaca gtctggtgat gggcagcgag gatggctatg tttactccgc 1621 ctcgcgtcac ggcctgcgtt ctggagtcaa tgaggtgtac gaacggcatt tgggccccat 1681 cacgggtata tccacgcact acaaccagct gtcgccggac tttggccacc tcttcctcac 1741 ctcctcgatt gactggacca ttaagctgtg gtcgctcaag gacacaaagc cgctgtattc 1801 gttcgaggac aattcggact atgtgatgga cgtcgcctgg tcgccggtgc atcccgcgct 1861 ctttgccgcc gtcgacggaa gcggacgcct ggacctgtgg aacctcaacc aggacacgga 1921 ggtgcccaca gcctcgatcg ttgtggccgg cgctccggcc ctgaatcgcg tctcctggac 1981 gccgtctggc ctgcatgtct gcatcggcga cgaggccggc aagctgtacg tttacgatgt 2041 ggccgagaat ctggcgcagc cgtcgcgcga cgaatggtcg cggtttaata cccatcttag 2101 cgagatcaag ctcaaccaga gcgacgaggt ctaggacaat agttgttaac tggtagttaa 2161 tagtcgatac ggaatcctgg aaggagcgtc cttgaatgaa atttaatttt gtattttttg 2221 tatcttttgt gatcccactg ctccttagtt gtgtatagcc cataactcga aactcatccg 2281 cagtccaaat gctcagaaac ttcacccttt cccccccaaa aaaacaaaga aatcaaggga 2341 aactgcaaca ttctctaggc aaccacacag taactgtatt agaaggttta tttaatgaaa 2401 ctcgacagaa tatagagata tatatataca tgagcagtgg aagaagaact agaagttgct 2461 ctccccgcat gtttgattgg catattcatt aatttgttat tagatatttt cccccaggtc 2521 cattcccatt ttcaatcgat aatggcaatg gatctgccga atgggattta ttattttgta 2581 attttatttt gtggaactaa aaagattgaa gcatgatcat ttaaccgact gtcgggcagg 2641 ctgagagcaa cacataaata aattaaaaat gctacatatt atatacaaca acgtattaag 2701 cttaaacctg agaagaagaa agacagagac taagaaggtc ggacaggaaa aaaaaacggg 2761 ggctcaggaa tgagagcacg aaaggcactg aagatcgacc gaaagagccc aaaatgtaaa 2821 tgtattagag cgaagcctat ttaacgagat taaataaaca taatatctat atacacatac 2881 aa