Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218384 2936 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X7, mRNA. ACCESSION XM_070218384 VERSION XM_070218384.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2936 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2936 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108057270" CDS 251..2188 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X7" /protein_id="XP_070074485.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDGYMEDWWRPRKAHATDY YVLAFDAQGDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVK KEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDER SHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNT KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTPLS AAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAI TSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPD FGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLD LWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSR DEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1142..2092 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1145..1282 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1184..1186,1226..1228,1244..1249,1277..1282, 1346..1348,1358..1360,1376..1381,1433..1438,1493..1495, 1508..1510,1526..1531,1616..1618,1667..1669,1682..1684, 1718..1723,1793..1795,1805..1807,1823..1828,1862..1867, 1919..1921,1934..1936,1952..1957,2000..2005,2057..2059, 2069..2071,2087..2092) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1313..1429 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1451..1570 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1598..1741 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1763..1861 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1877..1993 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2015..2095 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2936 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg gatatatgga ggactggtgg cgtccacgta aagctcatgc 721 tacggattat tatgtgcttg catttgatgc ccaaggagac gacgaagaga gctcgctgca 781 gaacctggac aatggattca cctccaagct gccaccgggc tatctcaccc acggcctgcc 841 caccgtcaag gacgtcgccc cggccatcac gcccctcgag atcaagaagg agaccgaggt 901 gaagaaggag gtgaacgagc tatccgagga gcagaagcag atgatcatcc tgtcggagga 961 cttcaagcgg ttcgtggtgc gcgccggccg cgtcatcgag cgggcgctct cggagaacgt 1021 ggacatttac acggactaca tcggcggcgg cgacagcgag gaggcgaacg acgagcgttc 1081 gcatgcccgc ctgtcgctca atcgcgtctt ctacgacgaa cgctggtcga agaaccgctg 1141 catcaccagc atggactggt ccacacactt cccggagctg gtggtggcct cgtatcacaa 1201 caacgaggag agtcccaacg agccggacgg cgtggtgatg gtttggaaca ccaaattcaa 1261 gaagagcacg cccgaggatg tcttccactg tcagagcgcg gtgatgtcca cgtgctttgc 1321 caaattcaat cccaatctga ttctcggcgg cacctattcg ggccaaattg tgctgtggga 1381 caatcgcgtg gccaagcgca cgcccatcca gcgaactcct ttgagtgccg cggcgcacac 1441 gcatcccgtt tattgcctgc aaatggttgg cacccaaaat gcgcacaacg tcatctccat 1501 atcgtcggac ggcaagctgt gctcctggtc gctggacatg ctgtcgcagc cgcaggatac 1561 cctggagttg cagcagcgcc aatcgaaggc cattgccatc acatcgatgg cctttccggc 1621 caacgagatc aacagtctgg tgatgggcag cgaggatggc tatgtttact ccgcctcgcg 1681 tcacggcctg cgttctggag tcaatgaggt gtacgaacgg catttgggcc ccatcacggg 1741 tatatccacg cactacaacc agctgtcgcc ggactttggc cacctcttcc tcacctcctc 1801 gattgactgg accattaagc tgtggtcgct caaggacaca aagccgctgt attcgttcga 1861 ggacaattcg gactatgtga tggacgtcgc ctggtcgccg gtgcatcccg cgctctttgc 1921 cgccgtcgac ggaagcggac gcctggacct gtggaacctc aaccaggaca cggaggtgcc 1981 cacagcctcg atcgttgtgg ccggcgctcc ggccctgaat cgcgtctcct ggacgccgtc 2041 tggcctgcat gtctgcatcg gcgacgaggc cggcaagctg tacgtttacg atgtggccga 2101 gaatctggcg cagccgtcgc gcgacgaatg gtcgcggttt aatacccatc ttagcgagat 2161 caagctcaac cagagcgacg aggtctagga caatagttgt taactggtag ttaatagtcg 2221 atacggaatc ctggaaggag cgtccttgaa tgaaatttaa ttttgtattt tttgtatctt 2281 ttgtgatccc actgctcctt agttgtgtat agcccataac tcgaaactca tccgcagtcc 2341 aaatgctcag aaacttcacc ctttcccccc caaaaaaaca aagaaatcaa gggaaactgc 2401 aacattctct aggcaaccac acagtaactg tattagaagg tttatttaat gaaactcgac 2461 agaatataga gatatatata tacatgagca gtggaagaag aactagaagt tgctctcccc 2521 gcatgtttga ttggcatatt cattaatttg ttattagata ttttccccca ggtccattcc 2581 cattttcaat cgataatggc aatggatctg ccgaatggga tttattattt tgtaatttta 2641 ttttgtggaa ctaaaaagat tgaagcatga tcatttaacc gactgtcggg caggctgaga 2701 gcaacacata aataaattaa aaatgctaca tattatatac aacaacgtat taagcttaaa 2761 cctgagaaga agaaagacag agactaagaa ggtcggacag gaaaaaaaaa cgggggctca 2821 ggaatgagag cacgaaaggc actgaagatc gaccgaaaga gcccaaaatg taaatgtatt 2881 agagcgaagc ctatttaacg agattaaata aacataatat ctatatacac atacaa