Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218383 2942 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X6, mRNA. ACCESSION XM_070218383 VERSION XM_070218383.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2942 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2942 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108057270" CDS 251..2194 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X6" /protein_id="XP_070074484.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWW RPRKAHATDYYDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETE VKKEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGGDSEEAND ERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVW NTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKRTPIQRTP LSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAI AITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLS PDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGR LDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQP SRDEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1148..2098 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1151..1288 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1190..1192,1232..1234,1250..1255,1283..1288, 1352..1354,1364..1366,1382..1387,1439..1444,1499..1501, 1514..1516,1532..1537,1622..1624,1673..1675,1688..1690, 1724..1729,1799..1801,1811..1813,1829..1834,1868..1873, 1925..1927,1940..1942,1958..1963,2006..2011,2063..2065, 2075..2077,2093..2098) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1319..1435 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1457..1576 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1604..1747 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1769..1867 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1883..1999 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2021..2101 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2942 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ttctttcttg ccactcctcg cccctgtcag gatatatgga 721 ggactggtgg cgtccacgta aagctcatgc tacggattat tatgacgacg aagagagctc 781 gctgcagaac ctggacaatg gattcacctc caagctgcca ccgggctatc tcacccacgg 841 cctgcccacc gtcaaggacg tcgccccggc catcacgccc ctcgagatca agaaggagac 901 cgaggtgaag aaggaggtga acgagctatc cgaggagcag aagcagatga tcatcctgtc 961 ggaggacttc aagcggttcg tggtgcgcgc cggccgcgtc atcgagcggg cgctctcgga 1021 gaacgtggac atttacacgg actacatcgg cggcggcgac agcgaggagg cgaacgacga 1081 gcgttcgcat gcccgcctgt cgctcaatcg cgtcttctac gacgaacgct ggtcgaagaa 1141 ccgctgcatc accagcatgg actggtccac acacttcccg gagctggtgg tggcctcgta 1201 tcacaacaac gaggagagtc ccaacgagcc ggacggcgtg gtgatggttt ggaacaccaa 1261 attcaagaag agcacgcccg aggatgtctt ccactgtcag agcgcggtga tgtccacgtg 1321 ctttgccaaa ttcaatccca atctgattct cggcggcacc tattcgggcc aaattgtgct 1381 gtgggacaat cgcgtggcca agcgcacgcc catccagcga actcctttga gtgccgcggc 1441 gcacacgcat cccgtttatt gcctgcaaat ggttggcacc caaaatgcgc acaacgtcat 1501 ctccatatcg tcggacggca agctgtgctc ctggtcgctg gacatgctgt cgcagccgca 1561 ggataccctg gagttgcagc agcgccaatc gaaggccatt gccatcacat cgatggcctt 1621 tccggccaac gagatcaaca gtctggtgat gggcagcgag gatggctatg tttactccgc 1681 ctcgcgtcac ggcctgcgtt ctggagtcaa tgaggtgtac gaacggcatt tgggccccat 1741 cacgggtata tccacgcact acaaccagct gtcgccggac tttggccacc tcttcctcac 1801 ctcctcgatt gactggacca ttaagctgtg gtcgctcaag gacacaaagc cgctgtattc 1861 gttcgaggac aattcggact atgtgatgga cgtcgcctgg tcgccggtgc atcccgcgct 1921 ctttgccgcc gtcgacggaa gcggacgcct ggacctgtgg aacctcaacc aggacacgga 1981 ggtgcccaca gcctcgatcg ttgtggccgg cgctccggcc ctgaatcgcg tctcctggac 2041 gccgtctggc ctgcatgtct gcatcggcga cgaggccggc aagctgtacg tttacgatgt 2101 ggccgagaat ctggcgcagc cgtcgcgcga cgaatggtcg cggtttaata cccatcttag 2161 cgagatcaag ctcaaccaga gcgacgaggt ctaggacaat agttgttaac tggtagttaa 2221 tagtcgatac ggaatcctgg aaggagcgtc cttgaatgaa atttaatttt gtattttttg 2281 tatcttttgt gatcccactg ctccttagtt gtgtatagcc cataactcga aactcatccg 2341 cagtccaaat gctcagaaac ttcacccttt cccccccaaa aaaacaaaga aatcaaggga 2401 aactgcaaca ttctctaggc aaccacacag taactgtatt agaaggttta tttaatgaaa 2461 ctcgacagaa tatagagata tatatataca tgagcagtgg aagaagaact agaagttgct 2521 ctccccgcat gtttgattgg catattcatt aatttgttat tagatatttt cccccaggtc 2581 cattcccatt ttcaatcgat aatggcaatg gatctgccga atgggattta ttattttgta 2641 attttatttt gtggaactaa aaagattgaa gcatgatcat ttaaccgact gtcgggcagg 2701 ctgagagcaa cacataaata aattaaaaat gctacatatt atatacaaca acgtattaag 2761 cttaaacctg agaagaagaa agacagagac taagaaggtc ggacaggaaa aaaaaacggg 2821 ggctcaggaa tgagagcacg aaaggcactg aagatcgacc gaaagagccc aaaatgtaaa 2881 tgtattagag cgaagcctat ttaacgagat taaataaaca taatatctat atacacatac 2941 aa