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LOCUS XM_070218382 2963 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X4, mRNA. ACCESSION XM_070218382 VERSION XM_070218382.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2963 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2963 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108057270" CDS 251..2215 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X4" /protein_id="XP_070074483.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDGYMEDWWRPRKAHATDY YDEYNLNPGLEWEDEFTGDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITPL EIKKETEVKKEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGGG DSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEP DGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAKR TPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ QRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGIS THYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFA AVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDV AENLAQPSRDEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1169..2119 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1172..1309 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1211..1213,1253..1255,1271..1276,1304..1309, 1373..1375,1385..1387,1403..1408,1460..1465,1520..1522, 1535..1537,1553..1558,1598..1600,1694..1696,1709..1711, 1745..1750,1820..1822,1832..1834,1850..1855,1889..1894, 1946..1948,1961..1963,1979..1984,2027..2032,2084..2086, 2096..2098,2114..2119) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1340..1456 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1478..1597 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1625..1768 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1790..1888 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1904..2020 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2042..2122 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2963 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg gatatatgga ggactggtgg cgtccacgta aagctcatgc 721 tacggattat tatgatgaat acaatcttaa tccgggttta gagtgggagg atgaattcac 781 aggagacgac gaagagagct cgctgcagaa cctggacaat ggattcacct ccaagctgcc 841 accgggctat ctcacccacg gcctgcccac cgtcaaggac gtcgccccgg ccatcacgcc 901 cctcgagatc aagaaggaga ccgaggtgaa gaaggaggtg aacgagctat ccgaggagca 961 gaagcagatg atcatcctgt cggaggactt caagcggttc gtggtgcgcg ccggccgcgt 1021 catcgagcgg gcgctctcgg agaacgtgga catttacacg gactacatcg gcggcggcga 1081 cagcgaggag gcgaacgacg agcgttcgca tgcccgcctg tcgctcaatc gcgtcttcta 1141 cgacgaacgc tggtcgaaga accgctgcat caccagcatg gactggtcca cacacttccc 1201 ggagctggtg gtggcctcgt atcacaacaa cgaggagagt cccaacgagc cggacggcgt 1261 ggtgatggtt tggaacacca aattcaagaa gagcacgccc gaggatgtct tccactgtca 1321 gagcgcggtg atgtccacgt gctttgccaa attcaatccc aatctgattc tcggcggcac 1381 ctattcgggc caaattgtgc tgtgggacaa tcgcgtggcc aagcgcacgc ccatccagcg 1441 aactcctttg agtgccgcgg cgcacacgca tcccgtttat tgcctgcaaa tggttggcac 1501 ccaaaatgcg cacaacgtca tctccatatc gtcggacggc aagctgtgct cctggtcgct 1561 ggacatgctg tcgcagccgc aggataccct ggagttgcag cagcgccaat cgaaggccat 1621 tgccatcaca tcgatggcct ttccggccaa cgagatcaac agtctggtga tgggcagcga 1681 ggatggctat gtttactccg cctcgcgtca cggcctgcgt tctggagtca atgaggtgta 1741 cgaacggcat ttgggcccca tcacgggtat atccacgcac tacaaccagc tgtcgccgga 1801 ctttggccac ctcttcctca cctcctcgat tgactggacc attaagctgt ggtcgctcaa 1861 ggacacaaag ccgctgtatt cgttcgagga caattcggac tatgtgatgg acgtcgcctg 1921 gtcgccggtg catcccgcgc tctttgccgc cgtcgacgga agcggacgcc tggacctgtg 1981 gaacctcaac caggacacgg aggtgcccac agcctcgatc gttgtggccg gcgctccggc 2041 cctgaatcgc gtctcctgga cgccgtctgg cctgcatgtc tgcatcggcg acgaggccgg 2101 caagctgtac gtttacgatg tggccgagaa tctggcgcag ccgtcgcgcg acgaatggtc 2161 gcggtttaat acccatctta gcgagatcaa gctcaaccag agcgacgagg tctaggacaa 2221 tagttgttaa ctggtagtta atagtcgata cggaatcctg gaaggagcgt ccttgaatga 2281 aatttaattt tgtatttttt gtatcttttg tgatcccact gctccttagt tgtgtatagc 2341 ccataactcg aaactcatcc gcagtccaaa tgctcagaaa cttcaccctt tcccccccaa 2401 aaaaacaaag aaatcaaggg aaactgcaac attctctagg caaccacaca gtaactgtat 2461 tagaaggttt atttaatgaa actcgacaga atatagagat atatatatac atgagcagtg 2521 gaagaagaac tagaagttgc tctccccgca tgtttgattg gcatattcat taatttgtta 2581 ttagatattt tcccccaggt ccattcccat tttcaatcga taatggcaat ggatctgccg 2641 aatgggattt attattttgt aattttattt tgtggaacta aaaagattga agcatgatca 2701 tttaaccgac tgtcgggcag gctgagagca acacataaat aaattaaaaa tgctacatat 2761 tatatacaac aacgtattaa gcttaaacct gagaagaaga aagacagaga ctaagaaggt 2821 cggacaggaa aaaaaaacgg gggctcagga atgagagcac gaaaggcact gaagatcgac 2881 cgaaagagcc caaaatgtaa atgtattaga gcgaagccta tttaacgaga ttaaataaac 2941 ataatatcta tatacacata caa