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LOCUS XM_070218381 2966 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X3, mRNA. ACCESSION XM_070218381 VERSION XM_070218381.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2966 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2966 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108057270" CDS 251..2218 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X3" /protein_id="XP_070074482.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWW RPRKAHATDYYVLAFDAQGDDEESSLQNLDNGFTSKLPPGYLTHGLPTVKDVAPAITP LEIKKETEVKKEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENVDIYTDYIGG GDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNE PDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVAK RTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLEL QQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGI STHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALF AAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYD VAENLAQPSRDEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1172..2122 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1175..1312 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1214..1216,1256..1258,1274..1279,1307..1312, 1376..1378,1388..1390,1406..1411,1463..1468,1523..1525, 1538..1540,1556..1561,1646..1648,1697..1699,1712..1714, 1748..1753,1823..1825,1835..1837,1853..1858,1892..1897, 1949..1951,1964..1966,1982..1987,2030..2035,2087..2089, 2099..2101,2117..2122) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1343..1459 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1481..1600 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1628..1771 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1793..1891 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1907..2023 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2045..2125 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2966 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ttctttcttg ccactcctcg cccctgtcag gatatatgga 721 ggactggtgg cgtccacgta aagctcatgc tacggattat tatgtgcttg catttgatgc 781 ccaaggagac gacgaagaga gctcgctgca gaacctggac aatggattca cctccaagct 841 gccaccgggc tatctcaccc acggcctgcc caccgtcaag gacgtcgccc cggccatcac 901 gcccctcgag atcaagaagg agaccgaggt gaagaaggag gtgaacgagc tatccgagga 961 gcagaagcag atgatcatcc tgtcggagga cttcaagcgg ttcgtggtgc gcgccggccg 1021 cgtcatcgag cgggcgctct cggagaacgt ggacatttac acggactaca tcggcggcgg 1081 cgacagcgag gaggcgaacg acgagcgttc gcatgcccgc ctgtcgctca atcgcgtctt 1141 ctacgacgaa cgctggtcga agaaccgctg catcaccagc atggactggt ccacacactt 1201 cccggagctg gtggtggcct cgtatcacaa caacgaggag agtcccaacg agccggacgg 1261 cgtggtgatg gtttggaaca ccaaattcaa gaagagcacg cccgaggatg tcttccactg 1321 tcagagcgcg gtgatgtcca cgtgctttgc caaattcaat cccaatctga ttctcggcgg 1381 cacctattcg ggccaaattg tgctgtggga caatcgcgtg gccaagcgca cgcccatcca 1441 gcgaactcct ttgagtgccg cggcgcacac gcatcccgtt tattgcctgc aaatggttgg 1501 cacccaaaat gcgcacaacg tcatctccat atcgtcggac ggcaagctgt gctcctggtc 1561 gctggacatg ctgtcgcagc cgcaggatac cctggagttg cagcagcgcc aatcgaaggc 1621 cattgccatc acatcgatgg cctttccggc caacgagatc aacagtctgg tgatgggcag 1681 cgaggatggc tatgtttact ccgcctcgcg tcacggcctg cgttctggag tcaatgaggt 1741 gtacgaacgg catttgggcc ccatcacggg tatatccacg cactacaacc agctgtcgcc 1801 ggactttggc cacctcttcc tcacctcctc gattgactgg accattaagc tgtggtcgct 1861 caaggacaca aagccgctgt attcgttcga ggacaattcg gactatgtga tggacgtcgc 1921 ctggtcgccg gtgcatcccg cgctctttgc cgccgtcgac ggaagcggac gcctggacct 1981 gtggaacctc aaccaggaca cggaggtgcc cacagcctcg atcgttgtgg ccggcgctcc 2041 ggccctgaat cgcgtctcct ggacgccgtc tggcctgcat gtctgcatcg gcgacgaggc 2101 cggcaagctg tacgtttacg atgtggccga gaatctggcg cagccgtcgc gcgacgaatg 2161 gtcgcggttt aatacccatc ttagcgagat caagctcaac cagagcgacg aggtctagga 2221 caatagttgt taactggtag ttaatagtcg atacggaatc ctggaaggag cgtccttgaa 2281 tgaaatttaa ttttgtattt tttgtatctt ttgtgatccc actgctcctt agttgtgtat 2341 agcccataac tcgaaactca tccgcagtcc aaatgctcag aaacttcacc ctttcccccc 2401 caaaaaaaca aagaaatcaa gggaaactgc aacattctct aggcaaccac acagtaactg 2461 tattagaagg tttatttaat gaaactcgac agaatataga gatatatata tacatgagca 2521 gtggaagaag aactagaagt tgctctcccc gcatgtttga ttggcatatt cattaatttg 2581 ttattagata ttttccccca ggtccattcc cattttcaat cgataatggc aatggatctg 2641 ccgaatggga tttattattt tgtaatttta ttttgtggaa ctaaaaagat tgaagcatga 2701 tcatttaacc gactgtcggg caggctgaga gcaacacata aataaattaa aaatgctaca 2761 tattatatac aacaacgtat taagcttaaa cctgagaaga agaaagacag agactaagaa 2821 ggtcggacag gaaaaaaaaa cgggggctca ggaatgagag cacgaaaggc actgaagatc 2881 gaccgaaaga gcccaaaatg taaatgtatt agagcgaagc ctatttaacg agattaaata 2941 aacataatat ctatatacac atacaa