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LOCUS XM_070218380 2993 bp mRNA linear INV 09-DEC-2024 chain (LOC108057270), transcript variant X1, mRNA. ACCESSION XM_070218380 VERSION XM_070218380.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2993 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2993 /gene="LOC108057270" /note="cytoplasmic dynein 1 intermediate chain; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108057270" CDS 251..2245 /gene="LOC108057270" /codon_start=1 /product="cytoplasmic dynein 1 intermediate chain isoform X1" /protein_id="XP_070074481.1" /db_xref="GeneID:108057270" /translation="MDRKAELERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGA GIDKDQRKDLDEMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWW RPRKAHATDYYDEYNLNPGLEWEDEFTGDDEESSLQNLDNGFTSKLPPGYLTHGLPTV KDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSEDFKRFVVRAGRVIERALSENV DIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASY HNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQI VLWDNRVAKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDML SQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYE RHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVA WSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGD EAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKLNQSDEV" misc_feature 563..655 /gene="LOC108057270" /note="Cytoplasmic dynein 1 intermediate chain 2; Region: Dynein_IC2; pfam11540" /db_xref="CDD:463291" misc_feature 1199..2149 /gene="LOC108057270" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 1202..1339 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(1241..1243,1283..1285,1301..1306,1334..1339, 1403..1405,1415..1417,1433..1438,1490..1495,1550..1552, 1565..1567,1583..1588,1673..1675,1724..1726,1739..1741, 1775..1780,1850..1852,1862..1864,1880..1885,1919..1924, 1976..1978,1991..1993,2009..2014,2057..2062,2114..2116, 2126..2128,2144..2149) /gene="LOC108057270" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 1370..1486 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1508..1627 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1655..1798 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1820..1918 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1934..2050 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2072..2152 /gene="LOC108057270" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 2993 /gene="LOC108057270" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gactggtaac gggtcactgg cgatgttcca tccctagttt ctctgccata gttagtcaaa 61 acattaaaac attttttacc ttcgtcttgt cgtgtggaaa aatgtcgatt taagtactta 121 aacgcagcag caaaacgtat tagatccctt aagagagaac ttggcccgca aaagagatcc 181 agagatcccc ctaaaaagaa gaagaagacc ccctgagaaa actccgaatc ccagaaggta 241 atccccgaaa atggatcgca aggctgagct ggaacgcaag aaggccaagt tggccgctct 301 gcgcgaggag aaggatcgcc ggcggcgcga gaaggagatc aaggacatgg aggaggcggc 361 cggtcgcatt ggcggcggtg caggaatcga caaggatcag cgcaaggatc tcgacgaaat 421 gctgtcatcg ctgggcgtgg cccccgtctc cgaggtcctc tcctcgctct cctccgtcaa 481 ctcgatgacc tcggacaact ccaacacaca gacccccgac gccagcctcc aagccaccgt 541 caatggccag agcggcggaa agaagcagcc cctgaacctg agcgtctaca atgtccaggc 601 cacgaacatt ccaccgaagg agacgctggt gtacacgaaa caaacgcaga cgaccagcac 661 cggcggagga aacggcgatg ttctttcttg ccactcctcg cccctgtcag gatatatgga 721 ggactggtgg cgtccacgta aagctcatgc tacggattat tatgatgaat acaatcttaa 781 tccgggttta gagtgggagg atgaattcac aggagacgac gaagagagct cgctgcagaa 841 cctggacaat ggattcacct ccaagctgcc accgggctat ctcacccacg gcctgcccac 901 cgtcaaggac gtcgccccgg ccatcacgcc cctcgagatc aagaaggaga ccgaggtgaa 961 gaaggaggtg aacgagctat ccgaggagca gaagcagatg atcatcctgt cggaggactt 1021 caagcggttc gtggtgcgcg ccggccgcgt catcgagcgg gcgctctcgg agaacgtgga 1081 catttacacg gactacatcg gcggcggcga cagcgaggag gcgaacgacg agcgttcgca 1141 tgcccgcctg tcgctcaatc gcgtcttcta cgacgaacgc tggtcgaaga accgctgcat 1201 caccagcatg gactggtcca cacacttccc ggagctggtg gtggcctcgt atcacaacaa 1261 cgaggagagt cccaacgagc cggacggcgt ggtgatggtt tggaacacca aattcaagaa 1321 gagcacgccc gaggatgtct tccactgtca gagcgcggtg atgtccacgt gctttgccaa 1381 attcaatccc aatctgattc tcggcggcac ctattcgggc caaattgtgc tgtgggacaa 1441 tcgcgtggcc aagcgcacgc ccatccagcg aactcctttg agtgccgcgg cgcacacgca 1501 tcccgtttat tgcctgcaaa tggttggcac ccaaaatgcg cacaacgtca tctccatatc 1561 gtcggacggc aagctgtgct cctggtcgct ggacatgctg tcgcagccgc aggataccct 1621 ggagttgcag cagcgccaat cgaaggccat tgccatcaca tcgatggcct ttccggccaa 1681 cgagatcaac agtctggtga tgggcagcga ggatggctat gtttactccg cctcgcgtca 1741 cggcctgcgt tctggagtca atgaggtgta cgaacggcat ttgggcccca tcacgggtat 1801 atccacgcac tacaaccagc tgtcgccgga ctttggccac ctcttcctca cctcctcgat 1861 tgactggacc attaagctgt ggtcgctcaa ggacacaaag ccgctgtatt cgttcgagga 1921 caattcggac tatgtgatgg acgtcgcctg gtcgccggtg catcccgcgc tctttgccgc 1981 cgtcgacgga agcggacgcc tggacctgtg gaacctcaac caggacacgg aggtgcccac 2041 agcctcgatc gttgtggccg gcgctccggc cctgaatcgc gtctcctgga cgccgtctgg 2101 cctgcatgtc tgcatcggcg acgaggccgg caagctgtac gtttacgatg tggccgagaa 2161 tctggcgcag ccgtcgcgcg acgaatggtc gcggtttaat acccatctta gcgagatcaa 2221 gctcaaccag agcgacgagg tctaggacaa tagttgttaa ctggtagtta atagtcgata 2281 cggaatcctg gaaggagcgt ccttgaatga aatttaattt tgtatttttt gtatcttttg 2341 tgatcccact gctccttagt tgtgtatagc ccataactcg aaactcatcc gcagtccaaa 2401 tgctcagaaa cttcaccctt tcccccccaa aaaaacaaag aaatcaaggg aaactgcaac 2461 attctctagg caaccacaca gtaactgtat tagaaggttt atttaatgaa actcgacaga 2521 atatagagat atatatatac atgagcagtg gaagaagaac tagaagttgc tctccccgca 2581 tgtttgattg gcatattcat taatttgtta ttagatattt tcccccaggt ccattcccat 2641 tttcaatcga taatggcaat ggatctgccg aatgggattt attattttgt aattttattt 2701 tgtggaacta aaaagattga agcatgatca tttaaccgac tgtcgggcag gctgagagca 2761 acacataaat aaattaaaaa tgctacatat tatatacaac aacgtattaa gcttaaacct 2821 gagaagaaga aagacagaga ctaagaaggt cggacaggaa aaaaaaacgg gggctcagga 2881 atgagagcac gaaaggcact gaagatcgac cgaaagagcc caaaatgtaa atgtattaga 2941 gcgaagccta tttaacgaga ttaaataaac ataatatcta tatacacata caa