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LOCUS XM_070218363 3996 bp mRNA linear INV 09-DEC-2024 (LOC108058435), transcript variant X2, mRNA. ACCESSION XM_070218363 VERSION XM_070218363.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3996 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3996 /gene="LOC108058435" /note="RNA-binding protein 25; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058435" CDS 338..3382 /gene="LOC108058435" /codon_start=1 /product="RNA-binding protein 25 isoform X1" /protein_id="XP_070074464.1" /db_xref="GeneID:108058435" /translation="MSYPPRAPMPPYMNASIPPPHMMQNMGNPPQRNFRNSATISSQP TVYHRPPEPQPQFRGPIITVFVGNISERVPEALLKRILATCGVVINWKRVSTFGFCEF DGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKEQECKNGDRSNSVDEKTED EYAISQMHEFLEEHKHEFDGFDGSNRPDLYGSSSRNKKTRREDDIKIKVLNDNALEEE KRNLISSEIGKFRMRAEADEHRKELEKEKEKEKLAASKEKERDKERKKHQREKERKSS TSKSGSSSGAAATTEKAAASATDNPEAAEKSDKDPAAAVVKDAKEPKEPKESSSSSTG RSASSRKDPPAAESTQKERRSDSKETRRRRSKSRSKDRERERERERELRELRDKERER ERERERERERERNEMRERERNEMRERERERERERERERDREREREREREEKLSAKPVR DSRREKEMEDELRERKKAEKKAREKEAAYQVRLSNWEIREKRKSKENEKYRLKELLRQ EERESDAKRLKEFVEDYDDERDDSLYYRGRELQQRLAERVREADADSKDREKEADELA ELKSKFFSGEYENPSLEFEKARREIEKLYEPRILINVNLEAAAATAAVHQRKQTSAAS ATGEGAAKELKSQQLDSYDPDMAGMNDDDSMSNDDRGGGSLADTASNASDGGYAAKNN NNDNKSLSNSLSRQNSESRDSLAQIHTPTQSAMHANDQDALLPSATPPMTMPLISLTL GNNLKMKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNMSNTTPSSHPASNAGGL GNSSSSSGSNHNNNSSSSSADRQSSAVSAATAAAAAVSQKIAQSSATGSGSNTSGGKN NGNGKQSSSGSSKHGKNEAAASASSGADAAAGTNTKKDENGAKVYDEKRRHIKSIIDR IPTQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGS PPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGIAGK" misc_feature 524..748 /gene="LOC108058435" /note="RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins; Region: RRM_RBM25; cd12446" /db_xref="CDD:409880" misc_feature 3134..3349 /gene="LOC108058435" /note="domain in splicing factors; Region: PWI; smart00311" /db_xref="CDD:214609" polyA_site 3996 /gene="LOC108058435" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctaccgatag cagcttgcta gcagctacca tctctagacc agagcagcgg ccgcagaaaa 61 aaaaggagat tcggtaattt acgcgtggat ttagcacgcg ccgtgaaccc agcagttgca 121 gcaggctcag cccagccgac ccgagaccct tttagttatc cttgcgggct cgcagctcca 181 ggacgaccac caaccgcact cacatttgcc actccgtgtg gcgtttgcgc ccatccgtgt 241 gtgtgtgtgt gtgtgctggc gtgtatgtgt gcctgcctgt cagtgcagtt tgcgtgtgtg 301 acacaaagga tacgcgggcg gaactgaaac gcacaagatg tcctacccac cgcgggcgcc 361 catgccgccc tacatgaatg catccatacc gccgccgcac atgatgcaga acatgggcaa 421 tccgccgcaa aggaactttc gcaactcggc gaccatcagc tcacagccga cagtctacca 481 tcgtccgccg gagccgcagc cgcagttccg cggccccatc atcaccgtct tcgtgggcaa 541 catcagcgaa cgcgtcccgg aggcgctgct caaacgcatc ctggccacct gcggcgtggt 601 gatcaactgg aagcgggtat ccacattcgg cttctgcgag ttcgacggac ccattgcagc 661 catgcgggct gtgcgcctgc tcagcgagat ggagatcgat ggcaagaagc tggtggccaa 721 ggtggatgcc aagaacaagg tgctcatcga ggactacaag gagcaggagt gcaagaacgg 781 cgaccgctcc aattcggtgg acgagaagac cgaggacgag tacgccatca gccagatgca 841 cgagtttctc gaggagcaca agcacgagtt cgacggcttc gacggcagca atcggcccga 901 tctgtacggc agcagcagtc gcaacaagaa gacgcgccgc gaggacgaca tcaagatcaa 961 ggtgctgaac gacaatgctt tggaggagga gaagcgcaat ctgattagca gcgagattgg 1021 aaagtttcgg atgcgcgccg aggccgacga gcaccgcaag gagctggaga aggagaagga 1081 aaaggagaag ctggcagcca gcaaggagaa ggagcgcgac aaggagcgca agaagcatca 1141 acgcgaaaag gagcgcaagt cctcgaccag caaatcgggt agttcatccg gggcagcggc 1201 caccacagaa aaagcagcgg cttcagctac cgataacccc gaagcagcgg aaaagtcgga 1261 caaagatccc gctgccgctg tcgtcaagga tgccaaggaa ccgaaagaac ccaaggaatc 1321 ctcatcctca tcgaccggac gcagtgccag cagtcgcaag gatcctcccg ccgcggagag 1381 tacacagaag gagcggcgct cggattccaa ggagacgcgt cgccgtcgct ccaagtcccg 1441 ctccaaggat cgcgagcggg agcgggaacg cgagcgcgag ctgcgtgagc tgcgcgacaa 1501 ggagcgcgag cgagaacgcg aaagggaacg cgagcgtgag cgcgaacgca acgagatgcg 1561 tgagcgagag cgcaacgaga tgagggagcg cgaacgggaa cgcgaaagag agcgcgagcg 1621 cgagcgagac cgagaacgcg agcgggagcg ggagcgcgag gaaaagctgt ccgcaaagcc 1681 agtgcgcgat tcgcggcgcg aaaaggagat ggaggacgag ctgcgggagc gcaagaaggc 1741 cgagaagaag gcgcgcgaga aggaggccgc ctaccaggtg cgcctgtcca actgggagat 1801 acgcgagaag cgcaagtcca aggaaaatga gaagtaccgc cttaaggagc tgctgcggca 1861 ggaggaacgc gagagcgacg ccaagcgact gaaggagttt gtcgaggact acgacgatga 1921 gcgcgacgat tcgctgtatt atcgcggccg cgagctgcag cagcgtttgg cggagcgagt 1981 gcgtgaggcg gatgccgatt ccaaggatcg cgagaaggag gccgacgaac tggccgagct 2041 caagtcgaag ttctttagcg gcgagtacga gaatccctcg ctggagttcg agaaggcgcg 2101 ccgcgagatc gagaagctct acgagccgcg cattctgatc aatgtcaacc tggaagcggc 2161 ggcggccaca gcggccgttc accagcgcaa gcagacttcc gccgcctcgg cgacgggcga 2221 aggtgctgct aaggagctaa agagccagca gctggacagc tatgatcccg atatggccgg 2281 catgaacgac gacgactcca tgtcgaacga tgatcgtggc ggcggctcct tggccgatac 2341 agcctccaat gccagcgatg gtggctatgc ggcgaagaac aacaataacg ataataagtc 2401 actgtcgaac agtttgagcc ggcagaacag tgagtccagg gattcgctgg cccagattca 2461 tacgcccacg cagagtgcca tgcatgcgaa tgatcaggat gccctgctgc cctccgccac 2521 gccgcccatg accatgcccc tcatctcgct gacgctgggc aacaacctca agatgaagaa 2581 gaagatcgag gccacgggcg tgtttgtgaa cgacgacgat aacgatgaga atatcaatcc 2641 caagaagcgc aagctggtgc cgctagacta cgatgacaac atgagcaaca ccacaccttc 2701 ttcccatccg gccagcaatg ccggcggatt gggaaatagc agcagcagca gcggcagcaa 2761 tcacaacaac aacagcagca gcagctcggc ggatcgccaa agctccgccg tatcggcggc 2821 caccgctgca gccgctgccg ttagccagaa gattgcccaa tcctccgcaa cgggctcggg 2881 atcaaatact tcgggtggca agaacaacgg caacggcaaa cagagtagca gcggcagcag 2941 caaacatggt aagaatgagg cagctgcatc tgcgagcagt ggcgcagatg ctgccgccgg 3001 tacaaacacc aaaaaggatg agaatggtgc taaggtgtat gatgaaaaac ggcggcatat 3061 aaaaagcatt attgacagga tacccacgca aaaggaggag ctatttaatt ataagctcga 3121 ccgcaacgag attgacagcg gtctaatgga acgcaagata cgtccatgga tcaataagaa 3181 aatcatcgag tatatcggtg agccggagcc gacgctagtg gactttatat gttccaaagt 3241 gttggccggc agtccgccgc agagtatctt ggacgatgtg caaatggtac tcgacgagga 3301 ggcggaggtg tttgtggtca agatgtggcg actgctcatc tacgaactgg acgccaagaa 3361 gagcggcatt gcggggaagt agaacgatga cgatgatccg cactgatcac cgggggaaaa 3421 taactggggc ggggagcggg tgcagatcga gggatcgaac gagaggagct gctgcgcgaa 3481 tatagactct aagttacttt atgcaactta ctttgcgatt acacacacaa ctttgtacat 3541 aaaaggcgtg ctcccgaaat tgttgctacc gccaaatgtc caggtttgtt ttataagctt 3601 cgacgaaact tctcgtgcaa atcaaatcaa aaagaaaatt tatgtaaaac gaaaatcgga 3661 agcaaaagcg cagcctcctc cctcaatgat ttctcaattt ctcaccgtgt tagcgttaat 3721 tgctaaaatt aatcatcgat tactgtaaat acacactaaa ctcacttata aatttacacc 3781 agcagaaaca aacaagcgaa aaaagaaagc cgtacataga cacataaaag cgtagcccat 3841 gtacaattca gttggtttct gatccaattc tcccccttta tttgttgcga tttcgaaaat 3901 cgatttccat ctacgcaaca gctctttttt tcgaaaaacg agcgcaaaca gaaaactgtc 3961 ttcattttaa taaaacaatg aaaagaaaat tcaaaa