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LOCUS XM_070218357 2440 bp mRNA linear INV 09-DEC-2024 rngo (rngo), transcript variant X1, mRNA. ACCESSION XM_070218357 VERSION XM_070218357.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2440 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2440 /gene="rngo" /note="DNA damage inducible 1 homolog rngo; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108059127" CDS 349..1803 /gene="rngo" /codon_start=1 /product="protein DDI1 homolog 2 isoform X1" /protein_id="XP_070074458.1" /db_xref="GeneID:108059127" /translation="MKITVTTSDDKVFCLDVAQDLELENLKALCAMEIGAEVAHIVLI FNGRELSSDKQTLQQCGVGDGDFIMLERRRSANRSGERIGIGIGIGIGDGTGSGGANP AISTLDFSSIAVPGTSSGGSPPSRSAQQQLGAQLQQQQQFNNLTDIPMTDEFNVNFDD DPATVRQMFLSSPETLSLLRQYNPRLAEAIDSGDQETFARLLREHISERKRRNEHRMR MLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNGYPVKA FVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHLT SSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLLIIGTTGTTTPFLPESELPVSARLT GNSEESMEQEAIANAIEQSKRESGGGLSGAGGGPNTIQPLDRFTEQDVTDLMALGYPR SDVLTVLRLCGGNKQAASSVLLNRNAAASGAELS" misc_feature 349..564 /gene="rngo" /note="ubiquitin-like (Ubl) domain found in the eukaryotic Ddi1 family; Region: Ubl_Ddi1_like; cd01796" /db_xref="CDD:340494" misc_feature 1087..1446 /gene="rngo" /note="retropepsin-like domain of DNA damage inducible protein; Region: RP_DDI; cd05479" /db_xref="CDD:133146" misc_feature 1183..1191 /gene="rngo" /note="catalytic motif [active]" /db_xref="CDD:133146" misc_feature 1183..1185 /gene="rngo" /note="Catalytic residue [active]" /db_xref="CDD:133146" misc_feature 1657..1764 /gene="rngo" /note="UBA domain-like superfamily; Region: UBA_like_SF; cl21463" /db_xref="CDD:473871" polyA_site 2440 /gene="rngo" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcacattaa atgagaaagt ttcaagagcc tctccaaatt atctgtaact tcccgtttcg 61 gagcaccgag cccaaaaaga aatatgaatt gaccttagcc acccccgcaa acatcgatag 121 gcagagtaag ctaagagtac cgataacgcg ccgcttgcaa ccctgtcgtg tggaggcggc 181 gttttcgttg ttgtgtcaaa acaataagcg accagcagaa tatcagcaca cccatcggcc 241 aggcgaagat aaagaacggt tagcagagat tagagaccca ccaccaccca cagagccgat 301 cccacaaaga gatcaccatc caccccccgg agaacagcgg cagcggcaat gaaaatcaca 361 gtgaccacca gcgatgacaa ggtcttctgc ttggacgtgg cccaggatct ggagctggag 421 aatctcaagg ccctctgcgc gatggagatc ggtgccgagg tggcccacat agtgctcatc 481 ttcaacggac gcgagctctc cagcgacaaa cagacgctgc agcagtgcgg cgtcggtgat 541 ggcgacttca tcatgctgga acgacgcagg agcgccaatc ggtcaggtga gagaatcgga 601 atcggaattg gaattggaat tggagatgga actggaagcg gtggtgcgaa cccggcgatc 661 agcacgctgg acttcagcag catcgcagtg ccgggcacga gttcgggcgg cagtccgccc 721 tcgaggagcg cccagcagca gctgggagcg cagctgcagc agcagcagca gttcaacaac 781 ctcacagaca tccccatgac cgacgagttc aacgtgaact tcgacgacga cccggcgaca 841 gtgcgtcaga tgttcctgtc cagtcccgag acgctgtcgc tgctccggca gtacaatccc 901 cgtctggcgg aggccatcga ttccggcgac caggagacct tcgcccgcct gctccgcgag 961 cacatttcgg agcgaaagcg acgcaacgag caccgcatgc gcatgctgaa cgccgatccc 1021 ttcgacgagg agacgcaacg gctgattgcc gaggagatca agcagaagaa catccaggac 1081 aacatggcgg cggccattga gtacaatccg gagatcttcg gcacggtgac catgctctac 1141 atcaactgca aggtgaatgg ctatccggtg aaggccttcg tggactcggg cgcccagacg 1201 acgatcatga gcaaggactg cgccgagcgg tgccacgtca accggctgat agacacgcgc 1261 tggaacggag tggccaaggg cgtgggcaca cagcccattc tgggcaggat tcacatggtg 1321 cagctgcaga tcgagaacga tcatctaacg tccagcttca cggtgctggg ccagcagccg 1381 atggacatgt tgctcggcct ggacatgttg aagcgacatc agtgcctcat tgacttgcag 1441 cggaatctgc tgattatcgg caccaccggc acaacgacgc cgtttctgcc ggagagcgag 1501 ctgccggtca gcgcccggct cacagggaac tcggaggaat cgatggagca ggaggccatt 1561 gccaatgcca tcgagcagag caagagggaa agtggcggcg gcttaagtgg agctggcggc 1621 ggacccaata ccattcagcc gctggaccga ttcaccgagc aggacgtcac cgatctcatg 1681 gccctcggct atccgcgcag cgatgtgctc accgtgctgc ggctgtgcgg cggcaacaag 1741 caggccgcca gctccgtgct gctcaaccgc aatgcagccg cctcgggcgc agagctcagc 1801 tgaacgcggc tagacgagga tccctagtac tcgagcagaa ctccccacag ccagaaaccg 1861 gattgcaata ggatgatgat gacgaaatac tccgagcaat accaaaaact tagccacgcc 1921 acatctaaag tcaagtaaat gatcagttag agggtaaaac acacacacag aacagaaaca 1981 acaaataagc aatgaaaacc gaaacgaaaa cctttctaat ttagtgaaat ttttataaac 2041 tgaagccact tttttatacg aatcgtttgt tacgatgtac aatatctaat ttttaaaaca 2101 gagccagggt tggttttttc tagagaatat tgagtggagg atcgagtagg cgatttaatc 2161 tattattaac taagcgaaaa ggaaggaaag taattggaca aactggacgg tgatggaacc 2221 aagccgcatc aacgaaaaca ttaactgtat tgcaagagaa atacaagaaa aaacataaac 2281 aaaaaacgga attaagtacg cctgactatt aaaatatatt acaattatac acatttaaaa 2341 acatttatac acaatttgaa ctagtattaa ggctctgtca agctaaactg aattgggtca 2401 ataaaaggtc gagagtattg ttttggattt gaaaaggaaa