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LOCUS XM_070218356 5640 bp mRNA linear INV 09-DEC-2024 (IntS6), transcript variant X3, mRNA. ACCESSION XM_070218356 VERSION XM_070218356.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5640 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5640 /gene="IntS6" /note="integrator complex subunit 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108065625" CDS 514..4344 /gene="IntS6" /codon_start=1 /product="integrator complex subunit 6" /protein_id="XP_070074457.1" /db_xref="GeneID:108065625" /translation="MTIILFLVDTSSSMCQKAYVNGVQKTYLDIAKGAVETFLKYRQR TQDCLGDRYMLLTFEEPPANVKAGWKENHATFMNELKNLQSHGLTSMGESLRNAFDLL NLNRMQSGIDTYGQGRCPFYLEPSVIIVITDGGRYSYRNGVHQEIILPLSNQIPGTKF TKEPFRWDQRLFSLVLRMPGNKIDERVDGKVPHDDSPIERMCEVTGGRSYRVRSHYVL NQCIESLVQKVQPGVVLQFEPLLPKEAATAGGASAGTSAISILAAGISGIASGAPEPP PDIVFQPVKKMIYVQKHITQKTFPIGYWPLPEPYWPDSKAITLPPRDAHPKLKILTPA VDEPQLVRSFPVDKYEIEGCPLTLQILNKREMNKCWQVIVTNGMHGFELPFGYLKAAP NFSQVHLYVLAYNYPALLPILHDLIHKYNMSPPNDLMYKFNAYVRSIPPYYCPFLRKA LVNINVPYQLLQFLLPENVDNYLSPTIANQLKHIKNTAKQDQENLCLKVYKQLKQPKP PYRQVETAKLCTGAALRRDLVRHPLLRDTFAKLHAEIEPVENYTIVVPQLTHQSSAKT YRNPFDIPRRDLVEEIARMRETFLRPASLVAKDSGHCLPIAEMGNYQEYLKNKDNPLR EIEPTNVRQHMFGNPYKKDKHMVMVDEADLSDVAPMKSPNGNGPGGAAGSPAAGGSGT SSPGSSPGGGGSSGPGMPGMGGGISGLMLGAGGSGGSSKKLDGTARGRKRKAGPLPRA FEFRRMSTDSRSSCSSAVSSVSTTGSAPGSPIPGATSSVVLGCDSSGGLESGSPNATC FDEDSNSNSSFVSSTSEASSSDSGMSGMSDRLGIGFDFNEEETSDQDTPLNGYVHNFI NGISDDATAGETEAVPGGTLPVASASPVSETTVGTLQVVTAAIPAGAAVAAAASVIPA SNGGEVCASSSSSSISCSSSSSPGVLYVPLNGLTTHAAYSSNLGNLDNNLSSGATGLL SLSKPGSLPLANGYGNAHSSSVISPPSPLSLVPPAPIASSSSSSSSSTSAYFSHNDIN DASEISRILQTCHNGTSGGSGSVAGTTSSNLNGNGSAESAGGAASSAEDHNSLLSFDA LKRNAGLVAGNPHYYWASGLNHHNNNNSSAASVMANNHNHRSSPCKLEVKSSGSGSSC GSSPTHSNNNGGMSSPVAVSSSSSLLLPLSEEQREAARQHNIELRLQIFRDIRRPGRD YSQLLEHMNLVKGDHEMQSDFVEMCIGESLRFRRHRMVSSLQEWWDRKQAAATGGGGG GVASTGAEQAVAKS" misc_feature 523..906 /gene="IntS6" /note="von Willebrand factor type A domain; Region: VWA_2; pfam13519" /db_xref="CDD:463909" misc_feature 4066..4251 /gene="IntS6" /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; Region: INT_SG_DDX_CT_C; pfam15300" /db_xref="CDD:464626" polyA_site 5640 /gene="IntS6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atatccatgt gcgctagtgt ttgtgtgtgt ttgcgctctt attcaaatag aaattgaatg 61 ttttgcactc gaattcgagt taatttacgg ctccccgcgg taataacgcc ttttaaccga 121 gcacttggcc tagttttgca gtttcgttgt tgttgttgtt tatccagtcc aaatgtcagc 181 tgtttcacgc aacatgtacc ataaaagcgg aacagcgaaa cgcagaaaaa gagcaaatcg 241 atcaagccca ggacaagaac aacaaaagca agagaatcag cagaagcaga agcagcaaca 301 acaagcagag gaagagagct gctaacaacg taaacaaaaa ctgagcacac atacacacaa 361 agggagatag caaccacaat aagaagaaag agagcgaggg aaagagcagg agaaagtgca 421 accgagctcg gtgaaaagag aaagagagag agagagagag aaaggaagat catcgataac 481 agataaagat atcagagagg aacaaccacc gccatgacca tcatactctt cctggtggac 541 acctcgtcgt ccatgtgcca gaaggcgtat gtgaatgggg tgcagaagac gtatctggac 601 attgccaagg gcgccgtgga gacgttcctg aagtatcgcc agcggacgca ggactgcctg 661 ggcgatcgct acatgctgct gacgttcgag gagccgccgg cgaatgtgaa ggccggctgg 721 aaggagaacc atgcgacgtt catgaacgag ctgaagaacc tgcagagcca cggcctcacc 781 tcgatgggtg aatcgctgcg caacgccttc gatctgctca atctgaaccg gatgcagtcg 841 ggcattgata cgtatggcca gggtagatgt cccttctacc tggaaccctc ggtcatcatt 901 gtgattacgg acggcggacg gtattcgtac cggaacggtg tccaccagga gatcatactg 961 ccgctgagca atcaaatacc gggcacaaag ttcaccaagg agccctttcg ctgggatcag 1021 cgcctcttct cgctggtcct ccggatgccg ggcaataaga ttgacgaacg cgtggatggc 1081 aaggtgccgc acgatgattc gcccatcgag aggatgtgcg aggtgacggg cggccgttcg 1141 tatcgcgttc gcagtcacta tgtgctgaat cagtgcatcg agagtctggt gcagaaggtt 1201 cagcctggtg tggtgctgca gtttgagccg ctgctgccga aggaggcggc aaccgctggc 1261 ggcgcatcgg cgggaacgag cgccatatcc atattagccg cgggaatatc gggaatagca 1321 tcgggagccc cggagccgcc gcccgacatt gtcttccagc cggtgaagaa gatgatctat 1381 gtgcagaagc acataacgca aaagaccttc cccattggct attggccgct gccggagcct 1441 tattggccag attcgaaggc aataacgctg ccgccgcgcg acgcacatcc caagctgaag 1501 atcctcacgc cggcggtgga tgaaccgcag ttggtgcgca gttttcccgt ggataaatac 1561 gaaattgagg gatgtccgct gacgctgcag atcctcaaca agcgcgagat gaacaagtgc 1621 tggcaggtga ttgtcacgaa tggaatgcac ggcttcgagt tgccctttgg ttatctcaaa 1681 gcggcgccca atttctcgca ggtgcatctc tacgttttgg cctacaatta tcccgcgctg 1741 ctgcccattc tgcacgacct catccacaag tacaacatga gtccgccgaa cgatttgatg 1801 tacaaattca atgcgtatgt aagatccata cctccgtatt actgcccgtt tttacgcaaa 1861 gctttggtca acatcaatgt gccgtatcag ctgctgcaat ttctgctgcc cgagaatgtg 1921 gacaactatt tgtcgccgac gatcgccaat cagctgaagc acatcaagaa tacggccaag 1981 caggatcagg agaatctctg cctgaaggtc tacaagcagt tgaagcagcc aaagccaccg 2041 tatcgccagg tggagacggc taaactttgc acgggagccg cgttgcgaag ggatttggtg 2101 cggcatccgc tgctaaggga tacatttgct aagctgcatg ctgaaattga gcccgtggag 2161 aattatacga ttgtggtgcc gcagctgacg catcaatcgt cggcgaaaac gtatcgcaat 2221 ccctttgata taccgcgtcg cgatttggtt gaggaaatag cgcggatgcg cgagactttc 2281 ctgcgacccg cctcgctggt ggccaaggat tcgggccact gcctgcccat cgccgagatg 2341 ggcaactatc aggagtacct caagaacaag gacaatccgc tgcgggagat tgagccgaca 2401 aatgtgcggc agcacatgtt tggcaatccc tacaagaagg acaagcacat ggtgatggtg 2461 gacgaggcgg atctgagcga tgtggcgccg atgaagtcgc cgaatggcaa tggaccgggt 2521 ggagcagcag gatcgccagc agcagggggt tcgggaacct catcgccggg atcttcgcca 2581 ggtggaggag gttccagtgg tccagggatg cccggaatgg gtggcggaat atctggattg 2641 atgttaggag ccggcggaag tggaggatcc tctaaaaaac ttgatggaac ggcgaggggg 2701 cgaaagagga aggcgggtcc gctgccgcgt gcctttgaat ttcgtcgcat gtccacggat 2761 tcgcggtctt cctgctccag cgcggtatcc tctgtgtcca caacgggcag tgcgccgggt 2821 tcacccattc cgggagccac gtcatctgta gttttgggat gcgattcctc tgggggatta 2881 gaaagtggga gtccaaatgc cacttgcttc gatgaggaca gcaatagcaa cagcagcttt 2941 gtgagctcaa cttcagaggc ttcttcaagt gattccggaa tgtctgggat gtccgatcgc 3001 ttgggcattg gctttgattt caacgaggag gagactagcg accaggacac gccgctcaat 3061 ggctatgtgc ataattttat caatggtata agcgatgatg cgacagcggg ggaaacggag 3121 gcggttccag gaggcacttt gccagttgcg agtgcctctc cagttagcga aacgacagtt 3181 ggaactttac aagttgttac agcagcaata ccagcaggag cagccgtagc agcagcagca 3241 tctgtgatcc cggccagcaa tggcggggaa gtttgcgcca gtagttccag tagctccatc 3301 agttgcagct ccagttcctc accaggagtg ctctatgtgc cgctcaacgg actaaccacc 3361 catgcggcct acagcagcaa tctgggcaat ctggacaaca acctgagctc tggagcaacg 3421 ggattactaa gccttagtaa gccgggttcc ctgcccttgg ccaatggcta tggaaatgcg 3481 cacagttcat cggtcatctc gccaccatct cccttgtctt tggtgcctcc tgcgccgatt 3541 gccagcagct caagcagctc cagcagctcc acttccgcct acttcagcca caatgacatc 3601 aatgatgcct cggagatctc gcggatactg cagacgtgtc acaatggaac cagtggaggc 3661 agtggaagcg tagcaggaac aactagcagc aatttaaatg gcaatggaag cgcagagagt 3721 gcaggaggag cagcctcctc cgccgaagat cacaactcgc tgctaagttt cgatgccttg 3781 aaacgaaacg cgggacttgt ggcggggaat cctcactatt actgggccag cggactcaat 3841 catcacaata ataacaacag cagtgcagcc tctgtgatgg ccaacaatca caatcaccgc 3901 agtagtccct gcaagctgga agtcaagagc agcggcagcg gttccagctg cggttcctcg 3961 ccgacgcaca gcaacaacaa cggcgggatg agctcaccgg tggcggtatc gtcatcatca 4021 tctttactac tgcccctcag cgaggagcaa cgcgaggcgg ccaggcagca caacattgag 4081 ctgcgactgc agatcttccg ggatattcgg cgacctggac gcgactacag ccagctgctg 4141 gagcacatga atctggtgaa gggcgaccat gagatgcagt cggatttcgt ggagatgtgc 4201 atcggggaat cgttgcgctt tcgcaggcat cgcatggttt ccagcctgca ggagtggtgg 4261 gatcgcaagc aggcggcggc aactggagga ggaggaggag gagtagcgag tactggagcg 4321 gagcaggccg tcgccaagag ttaacgatgg ctcatgtggc accactgagc ccgcggggtc 4381 atccaatcca tctgtctgtg atgtcaacga aatcgaaatc gaaaacgaaa tcgaagagca 4441 gcctcgtcaa tttccaatat actgtaaata aatgccagga cagccaggat caacgccacg 4501 gggatatagc cactatatcg cataccaagc aacaaccagc aaaatcaaca aaatgcagca 4561 acaattctaa agcagagaaa acaccacatt tttgcgggac gatttcttag tatttaaaaa 4621 aaaagaaaag agtttaggag tttttgtagc agcaggcaag atacatgtaa ttactaaata 4681 tatataaata cttaagctag acgttagtta atgataaaac ttaaaaaaaa acaaaaagaa 4741 aaaaatagat ttttgtagca gccgtttaag ttgtattttt ttttttacct agtaatacct 4801 agtaatactt atacatacat atataaatat atttttctct tgtacttcta agaacctagg 4861 aattatttta attagacttt tatcaaatta agtgtatatt gtatgtgtat aaaaaaaaaa 4921 cgaagagaaa gtttaggaaa agcttgagct tattgagcct cacacgtttt agccaatttt 4981 tgttgggcct gtttcaataa cacacacact tcgctttgat tttagccaaa acgaatagag 5041 aacgtaaaaa agaaaagcac tacacacaca catatatata taaatatata gtatatgtat 5101 ttattgccta aatcgggtca gcgtttcatt atctaaaata accgtattat tatgtttctt 5161 cggtttcctt caatcctcat tatttttttt tttttgctct tatttattgt atactttatt 5221 taatatctat acaaattgta atgtgagcat agcctaaaca cacaataatt atttgaaagg 5281 cagacaaaac gataagcaaa aaaaaaaaac gtaccgtttg ttatacatat atataaaaac 5341 aagaaaaaag taatacattt ttgcactatt tttttacgtg tatgtttgta tgcatgacct 5401 gtgagtaatt gagtaataac aacagcagaa aataaaaaaa agatgaaacg tttactagta 5461 gttaggcggt gggcagtgat tttagtactg cttcaggatt aaataattat gtacaatcta 5521 gagtgtgcgt atctaacaaa tttcataaga catcaacaac agaaacatca aaacagcagt 5581 aaaacaaacc gaaaacaata cgaaatcaaa cgaaaataaa aagaggagca ttgcattcaa