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LOCUS XM_070218349 6769 bp mRNA linear INV 09-DEC-2024 echinus (ec), transcript variant X5, mRNA. ACCESSION XM_070218349 VERSION XM_070218349.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6769 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6769 /gene="ec" /note="ubiquitin specific peptidase echinus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054960" CDS 650..5818 /gene="ec" /codon_start=1 /product="uncharacterized protein ec isoform X3" /protein_id="XP_070074450.1" /db_xref="GeneID:108054960" /translation="MDTVAIKTALPHAPLAGQQQLLLQQQPQQATAATLATLTTTNGQ TSAINAKNNIGAFFQTCKVLWHLDAFRRSFRGLNQHVCGGQDCIFCALKELFQQLQTS SEPALCPEPLRRALASGPLAGRRFPLGCLGDAAECFELLLHRVHSHISPDDGDSCESS ACIAHRRFAMRVIEQSVCKCGANSEQLPFTQMVHYVSASALTSQKSLALQSHQQLSFG QLLRAAGNMGDIRDCPNTCGAKIGICRALLNRPDVVSIGIVWDSERPAADQVHAVLKA VGTSLRLGDVFHQVSEQRWAQQTQHELVGIVSYYGKHYTTFFFHTKLKVWVYFDDANV KEVGPSWEGVVDKCSRGRYQPLLLLYAVPQQGGGGGVGGGVPDAVTIPTSAPVIRRAV TPSPEKPSLGSTRRAITPTPLRTPPMPTNDYQNLSVIQKSIFPGYLMSSDETDAYISR KTVEHVLSAQYQNLSVIQDKIVAPPGGATPANQQNADKDGGFLSRKPIEAVLSAQLAR RQHLQLQRSHSAESSSGHASSSNGSSPPSDGLTMPEHLNQPRRRDSGNWSGDRNSASS ASSTTLDNPYLYMVAKRGVAAVPQSPTRHGLPYDPGYDSFSLSSTDSYPPKHALNPQL AKIPEAAMGAMVPNVVPHGHGQLALSGDCEKLCHEADQLLEKSRLVEESHDLETALVL CNAAAGRARAAMDAPYSNPHTMTFARMKHNTCVMRARSLHRRILVEKGAETEAMPELK HMREGSTSSVKHVRQNSKDRTLEKEQQLQQQQQQQQLQFQQLQQQIPASIEIYATLPK RKSPLKTLASSAAACDDNAIEYEQQVTTTSSPGKPERESRSLFGRKDKDKEKEKRSRS EDRNKLTREFSLTETLLVNAKDTLKKHKEDKDEKKEKDKSGKKQHKIRRKLLMGGLIR RKNRSMPDLTEAVDDGVASSGNHHHLPHYSTNQGGVTTAAGTLLGSSVDDSAVGLGKH GQHGMSGYISEGHFDYPGSSSASGGGSNAGSNPNPNLERSKLMRKSFHGSGRQLTMVP KVAPPPPMRTSSTLTPQQQQQFHHEANLSNLSAMSSNTSISEDSCQTIITTCAQVHSE QSPLKDLQMLQSAVGQDELPLPLPPMELPPYPSPPHSACHSRQASEDFPPPPPPELDL EPLNQQLSQLQALEAASKHQRQQLDSLEGTTSILAQLQQRQHLLKLRKEQQASHPVDA NWLKELQAKQASDLRAMQRKLEASSPSSVRDLAHRFEQTSIRSYASQELLSQAGGQPV GQLRTQMNGLPSGGAGASKLDVDEVDSMPAVRSTHQLLPKPKYEMSQSQIAEEIREVE LLNTMVQQTLNQNGVAAPPKRVKKKSVSFCDQVILVATAGNEEDDDFIPNPILERVLR TAQHPNEKVTAQMIQQQQQNMLRLQTEAQPRQQLQQQQQQLQQQLQQQQQQPSPMLGQ RPAAAAADMQRYVQRMQQQQQQQQHQELLRQQQQQQQQQQQQQHRTSMSGIASQQHLQ QMDAQYTTMPRPLHHPPPQLGSYSVHLQKHQQLQQQQQQQLQQQQQQQQQAYFSNGNV ATTEQVPLPSPYQRVPLPHGYQPAVQAATAGPYYPLPNAQQHQQQQQQQQQQQQLQLQ QQQLMAKPVQKKVSFEPGTKGEAECLPPPPPQKNGLPEPAGSPGAPSGAAAGPGGNSS AAITAIPTRVYNNAIVKASAKAVECNLCRKRHVIAPAVYCTNCEYYLQMLNQRR" misc_feature 803..1669 /gene="ec" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <5726..>5794 /gene="ec" /note="protein kinase C conserved region 1 (C1 domain) superfamily; Region: C1; cl00040" /db_xref="CDD:412127" ORIGIN 1 ggtgttttag tgttgtttgc gctctcagct ccgaaagacg ttcgcccagt cgccgtcgca 61 gcttcaaaca aaaacacttt ttttttttgg tttaaaaaca aacaaaacat tttttttcca 121 aaaacaagaa acaaaacaat ttcttttgtg aaacgagaag aaaagaaact aatttttttg 181 tgaattgtgg ttgtgtggta ctgttaagcg tggcttaatc aagggaaatc aaaaacgaaa 241 tactctaaga ggcaaagcca agttgctctt taaagaagaa gcttattcta tgtgtgtgtg 301 agttttgtga gcgtgacatt aaagccaaaa gagccacaat aacaacaaat tgtagctaag 361 ctgtggaaaa gctaagaaac ctaaaaacaa aaacaacaaa aaacttagct aagtgaacgc 421 aaacaggtgc gaaaagtaca aaaagtacaa aaacgtacga gaagaaaacg aagaagttgc 481 tcaagaactc gaactcaaaa agggttgcgg caacttccct tgctggcttc tttttcttgt 541 ttttcccatt ttgcggaagt tgcagaggta cccaaaaaca aaaacaacaa aaaacacaca 601 cacaatgtgc tgaaaagttc tcgaggaggg aaaaaacaca gccttcaaca tggatacggt 661 ggccattaaa acagcactgc cacatgcccc attggcgggg caacaacaat tgctgctgca 721 gcaacaacca cagcaggcaa cagcggcaac actagcaaca ttaacaacaa caaatggcca 781 aacatcagct atcaatgcca aaaacaacat tggcgcattc tttcagacct gcaaggtctt 841 gtggcacttg gacgcctttc gacgatcgtt tcgcggccta aatcagcacg tatgcggcgg 901 ccaagactgc atcttctgcg ctctaaagga actcttccag cagctgcaga ccagttcgga 961 accggccttg tgtccggagc cactgcgtcg agccttggcc agtggtccgc tggcaggacg 1021 acgcttcccc cttggatgcc tgggcgatgc cgcagagtgc ttcgagctcc tgctgcaccg 1081 cgtccactcg cacatctcgc cggatgacgg cgactcctgc gagtcctccg cctgcattgc 1141 ccaccgaagg ttcgccatgc gcgtcatcga gcagagcgtc tgcaagtgcg gagccaactc 1201 cgagcagctg cccttcaccc agatggtcca ctacgtctcc gcctcggcct tgacctccca 1261 gaagagtctg gccctgcagt cgcaccagca gctgagtttc ggccaacttc tgagggccgc 1321 cggcaacatg ggcgacatac gcgattgtcc gaacacctgt ggcgccaaga tcggcatatg 1381 ccgtgccctg ctcaaccgtc cggatgtggt gtccatcggc attgtctggg actcggagcg 1441 accggccgcc gaccaggtgc acgccgtcct gaaggccgtg ggcaccagtc tgcggctggg 1501 cgacgtcttc catcaggtca gcgagcagcg gtgggcccag cagacgcagc acgagctggt 1561 ggggatcgtc tcctactacg gcaagcacta caccaccttc ttcttccaca cgaagctcaa 1621 ggtgtgggtg tatttcgacg acgcgaacgt caaggaggtg ggtcccagct gggagggcgt 1681 ggtggacaag tgcagccgag gcagatacca gcccctgttg ctcctctacg cggttcccca 1741 gcagggagga ggaggaggag tcggaggagg agttccggat gcagtgacca ttccaacgag 1801 tgccccggtg attcgtcgcg ccgtgactcc cagtcccgag aagcccagtt tgggcagcac 1861 ccgacgggcc attaccccca cgcccctgag gacgccgccc atgcccacca acgattacca 1921 gaacctgagt gtcatccaga agagcatctt tccgggctac ctgatgagca gcgacgagac 1981 ggacgcctac atcagtagga agacggtgga gcatgtgctg agtgcccagt accagaatct 2041 gagtgtgatc caggacaaga tagtagctcc tccaggagga gcaacaccag ctaaccaaca 2101 aaatgccgac aaggatggag gcttcctcag ccgcaagccc atcgaggcgg tgctgagtgc 2161 ccagctggcc aggcggcagc acctgcagct gcagcgcagc cacagtgcgg agtccagttc 2221 gggccacgcc tcctcctcca acgggagcag cccgcccagc gatgggctca ccatgccgga 2281 gcacctcaac cagccgcgtc gtcgggactc gggcaactgg tcgggggatc ggaacagcgc 2341 cagttcggcc agctccacca ccctggacaa tccctatctg tacatggtgg ccaagagggg 2401 tgtggccgcg gtgccgcaga gtcccacgcg acacggtctg ccctacgatc ccggctacga 2461 ctccttctcg ctcagctcca cggactcgta tccgccgaag cacgccctga atccccagct 2521 ggccaagatt cccgaggcgg ccatgggtgc gatggtgccg aatgtggtgc cccatggaca 2581 tggtcagctg gccctgtcgg gggactgcga gaagctctgc cacgaggcgg atcagctgct 2641 ggagaagtcg cgactggtgg aggagtcgca cgacctggaa acagcactcg tcctctgcaa 2701 tgcggccgcc ggaagggcga gggcggccat ggatgcgccg tacagcaatc cgcacaccat 2761 gacctttgcc cggatgaagc acaacacgtg cgtgatgcgg gcgaggagcc tgcaccgccg 2821 cattctggtg gagaaggggg cggagacgga ggccatgccg gaactgaagc acatgcggga 2881 gggcagcacc agcagcgtga agcatgtgcg ccagaacagc aaggatcgca cgctggagaa 2941 ggagcagcag ttgcagcagc agcagcagca gcagcagttg cagttccagc agctgcagca 3001 gcagatcccc gccagcatcg agatctatgc cacgctgccc aagcgcaaga gtcccctgaa 3061 gacgctggcc tcctcggcgg ccgcctgcga cgacaatgcc atcgagtacg agcagcaggt 3121 gaccaccacc agtagtcccg ggaagccgga gcgggagagt cgctccctgt tcggccggaa 3181 ggacaaggac aaggagaagg agaagcgcag tcgcagcgag gatcgcaaca agctgacccg 3241 cgagttctcg ctcaccgaaa cgctgcttgt gaacgccaag gacacgctga agaagcacaa 3301 ggaggacaag gacgagaaga aggagaagga caagagcggc aagaagcagc acaagatcag 3361 gcgcaagctc ctgatgggcg gcctcatccg gcgcaagaac cgctccatgc ccgatctcac 3421 cgaggcggtg gacgacggag tggcctccag tgggaatcac caccatctgc cgcactactc 3481 caccaaccaa gggggagtga ccacggcggc gggcaccctt ctaggcagct ccgtggacga 3541 cagtgccgtg ggtctgggca agcatggcca gcacggcatg agtggctaca tctccgaggg 3601 ccactttgac tacccgggct cgagttccgc gagcggagga ggcagcaatg ctggcagcaa 3661 tcccaatccg aatctcgagc ggagcaagct gatgcgcaag agcttccatg gcagcggcag 3721 gcagttgact atggtgccca aggtggcgcc accgccgccc atgcgcacca gctccaccct 3781 gaccccccag cagcagcagc agttccacca cgaggccaac ctgtccaatc tctcggctat 3841 gagctcgaac acctcgatca gcgaggactc ctgccagacg atcatcacca cctgcgccca 3901 ggttcactcg gagcagagtc cgctgaagga tctgcaaatg ctgcagtctg ccgttggcca 3961 ggatgagctg cccctgccgc tgccgcccat ggaactgcct ccgtacccca gtccgccgca 4021 ctccgcctgc cactcgcggc aggccagcga ggatttcccg ccgccaccgc cgcccgaatt 4081 ggacctggaa cccctcaacc agcagctcag ccagctgcag gccctcgagg cggccagcaa 4141 gcaccagcgc cagcagctgg actccctgga gggcaccacc agcatcctgg cccagctgca 4201 gcagcgccag catctgctca agctgcgcaa ggagcagcag gccagccacc cggtggacgc 4261 caactggctg aaggagctgc aggccaagca ggccagcgat ctgcgggcca tgcagcgcaa 4321 gctggaggcc tcttcccctt cgagtgtgcg ggatctggcc caccgcttcg agcagacctc 4381 cattcgatcc tacgcctcgc aggagctgct ctcccaggcg ggaggacagc cggtgggtca 4441 gctgcgcacc cagatgaacg gactgcccag tggcggggca ggggcatcca agctggatgt 4501 ggatgaggtg gactcgatgc cggcggtgag gagcacccac caactgctgc ccaagcccaa 4561 gtacgagatg agccaatcgc agatcgccga ggagatccgc gaggtggagc tgctcaacac 4621 gatggtgcag cagacactca accagaacgg agtcgctgcg ccacccaagc gggtgaagaa 4681 gaagagcgtc tccttctgcg accaggtgat cctggtggcc accgcaggga acgaggagga 4741 cgacgacttc atacccaatc ccatactgga gcgggttctc cgcactgccc agcatcccaa 4801 cgagaaggtc accgcccaga tgatccagca gcagcagcag aatatgctgc gcttgcaaac 4861 ggaggcgcag ccgcgtcagc agttgcagca gcagcagcaa cagttgcagc agcaactgca 4921 acagcagcag cagcagccat cgcccatgtt gggccagcga ccagcggcag ccgcagcgga 4981 tatgcagcga tatgtgcaga ggatgcaaca gcagcagcag cagcagcaac atcaggagct 5041 gctacgccag cagcagcagc agcagcagca acagcagcag cagcaacatc gcaccagcat 5101 gagcggcata gccagccagc agcacctgca gcaaatggac gcacagtaca ccaccatgcc 5161 gcgtcccctg caccatccgc cacctcagct gggcagctac tcggtgcacc tgcagaagca 5221 ccagcaactg cagcagcagc agcagcaaca gttgcaacag cagcagcagc agcaacagca 5281 ggcctacttc agcaacggca atgtggcgac caccgagcaa gtgcctttgc cttcgcccta 5341 ccagcgagtg cccctgccac atggctatca accagcggtg caagcagcaa cagctggacc 5401 ctactaccca ctgcccaatg cccagcagca tcagcagcag cagcaacagc agcaacagca 5461 gcagcagttg cagctgcaac agcaacagct gatggccaag cccgtgcaga agaaggtgag 5521 ctttgagccg gggaccaagg gcgaagccga gtgcctgcca ccgccgccgc cgcaaaagaa 5581 tggactgccc gagccggcgg gatcaccagg agcaccgtcg ggggcagcag ccgggcccgg 5641 gggcaactcc tcggccgcca tcaccgccat acccacccgc gtctacaaca atgccatcgt 5701 gaaggcctcg gccaaggccg tcgagtgcaa cttgtgccgc aagcggcatg tgatcgcgcc 5761 ggcggtttac tgcaccaact gcgagtacta cctgcagatg ctgaaccagc gcagatgatg 5821 atgacgaccc tggttgtgga ccgtctctag tgcaactttc tagccgtaca tggaacccgt 5881 taatctcaag caatgcaatg ctgccacgtc gccaataagg atccgccaag gatgtacata 5941 gcatggttac aaatacgtag gtctaaggac gaagggctgg cgggcgactc gaggatcggg 6001 gcggaacgca gaaacggagg gggaacacgc acagtccttc tatggttcca catgagaagc 6061 tcccgctgtg gcacacaacc cacccaccac tcaccaccca ctcatccatc catgtccatg 6121 tccccaagca cacgcacaca agcatattgt acacgcccat ccacatatac ttgccctgag 6181 gccctaagct gggttgtaaa cgatgcagct gatcagctgc tgcaccgttt acagcctgct 6241 cagcgccaac cgtcgcccca ttggacatcg atcgcttgac taaatgcatt cccagatact 6301 aaaaactaaa gcacccgaag cccggccagt ccttcgtgtt cttttttttc cacaacgaat 6361 tttatttaca ttttttacct aagcctacca catacgattt attcgccagc agtttgaaac 6421 tcagtcgctg agcttccttg tgcgtgctgt tgtccaacga cacacgcatt ccattttttt 6481 ttaaaatttt ttttgtaatt cttaatttca gactaagcat acatattttt ttaatttcgt 6541 acttaattag gcctaacgta agcttactct tttgtgtctt gtgcatttaa acgattccgt 6601 gtatttatag tgttaatact acttttacag tttatacatt attatatgaa gattatatat 6661 ttttataatg acttttgaaa gaagatttat ctttgcagca tacgagcagc gagaaaagag 6721 atgtcaagca tccacaagaa tggtaaagaa tcattttttc taaataaat