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LOCUS XM_070218348 6822 bp mRNA linear INV 09-DEC-2024 echinus (ec), transcript variant X4, mRNA. ACCESSION XM_070218348 VERSION XM_070218348.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6822 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6822 /gene="ec" /note="ubiquitin specific peptidase echinus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054960" CDS 610..5871 /gene="ec" /codon_start=1 /product="uncharacterized protein ec isoform X2" /protein_id="XP_070074449.1" /db_xref="GeneID:108054960" /translation="MSARSGRRMTTPGTLYRLASGAAATPATPTNSLYAQPPKPYAVG SIPSGSERNRLLELLRAPNSLTSPTLEPSSKGLLNGPGQNNCFLNCAVQVLWHLDAFR RSFRGLNQHVCGGQDCIFCALKELFQQLQTSSEPALCPEPLRRALASGPLAGRRFPLG CLGDAAECFELLLHRVHSHISPDDGDSCESSACIAHRRFAMRVIEQSVCKCGANSEQL PFTQMVHYVSASALTSQKSLALQSHQQLSFGQLLRAAGNMGDIRDCPNTCGAKIGICR ALLNRPDVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQVSEQRWAQQTQHEL VGIVSYYGKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKCSRGRYQPLLLLYA VPQQGGGGGVGGGVPDAVTIPTSAPVIRRAVTPSPEKPSLGSTRRAITPTPLRTPPMP TNDYQNLSVIQKSIFPGYLMSSDETDAYISRKTVEHVLSAQYQNLSVIQDKIVAPPGG ATPANQQNADKDGGFLSRKPIEAVLSAQLARRQHLQLQRSHSAESSSGHASSSNGSSP PSDGLTMPEHLNQPRRRDSGNWSGDRNSASSASSTTLDNPYLYMVAKRGVAAVPQSPT RHGLPYDPGYDSFSLSSTDSYPPKHALNPQLAKIPEAAMGAMVPNVVPHGHGQLALSG DCEKLCHEADQLLEKSRLVEESHDLETALVLCNAAAGRARAAMDAPYSNPHTMTFARM KHNTCVMRARSLHRRILVEKGAETEAMPELKHMREGSTSSVKHVRQNSKDRTLEKEQQ LQQQQQQQQLQFQQLQQQIPASIEIYATLPKRKSPLKTLASSAAACDDNAIEYEQQVT TTSSPGKPERESRSLFGRKDKDKEKEKRSRSEDRNKLTREFSLTETLLVNAKDTLKKH KEDKDEKKEKDKSGKKQHKIRRKLLMGGLIRRKNRSMPDLTEAVDDGVASSGNHHHLP HYSTNQGGVTTAAGTLLGSSVDDSAVGLGKHGQHGMSGYISEGHFDYPGSSSASGGGS NAGSNPNPNLERSKLMRKSFHGSGRQLTMVPKVAPPPPMRTSSTLTPQQQQQFHHEAN LSNLSAMSSNTSISEDSCQTIITTCAQVHSEQSPLKDLQMLQSAVGQDELPLPLPPME LPPYPSPPHSACHSRQASEDFPPPPPPELDLEPLNQQLSQLQALEAASKHQRQQLDSL EGTTSILAQLQQRQHLLKLRKEQQASHPVDANWLKELQAKQASDLRAMQRKLEASSPS SVRDLAHRFEQTSIRSYASQELLSQAGGQPVGQLRTQMNGLPSGGAGASKLDVDEVDS MPAVRSTHQLLPKPKYEMSQSQIAEEIREVELLNTMVQQTLNQNGVAAPPKRVKKKSV SFCDQVILVATAGNEEDDDFIPNPILERVLRTAQHPNEKVTAQMIQQQQQNMLRLQTE AQPRQQLQQQQQQLQQQLQQQQQQPSPMLGQRPAAAAADMQRYVQRMQQQQQQQQHQE LLRQQQQQQQQQQQQQHRTSMSGIASQQHLQQMDAQYTTMPRPLHHPPPQLGSYSVHL QKHQQLQQQQQQQLQQQQQQQQQAYFSNGNVATTEQVPLPSPYQRVPLPHGYQPAVQA ATAGPYYPLPNAQQHQQQQQQQQQQQQLQLQQQQLMAKPVQKKVSFEPGTKGEAECLP PPPPQKNGLPEPAGSPGAPSGAAAGPGGNSSAAITAIPTRVYNNAIVKASAKAVECNL CRKRHVIAPAVYCTNCEYYLQMLNQRR" misc_feature 835..1722 /gene="ec" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <5779..>5847 /gene="ec" /note="protein kinase C conserved region 1 (C1 domain) superfamily; Region: C1; cl00040" /db_xref="CDD:412127" ORIGIN 1 ctctatcggc tgctttgact ttgtttgctt ttgctagtgt ctttgcattt gcgtttgcgt 61 ttgcgccgtt gccacacaat tgttattgtc gacgtgcgcg tgtgtctttg ccactttgtt 121 tgcgttgttt ctgggcccaa atcaccgaat cacttgttgc tggatgcttt tgcctgtttt 181 tggtgctagc caaaaaactt aaccgcgagt gcgagtgcaa acctgaatga tccgatgatg 241 gagaaaaaca aatagtggcc gtggtccgag ttgagtttgt tttctgtgtt tcattgcgtt 301 tcttgagttt tttgagtttt tgttcaagtg aaagcgtgtg aaaagtggcc aacactcggg 361 gccaaagccc tctcgcactc tctcttcggc tctcttttgg caagggaata tacactactc 421 gataaactga agagcccgat tccgattccg acacccagcg atatccatat cctgccttgc 481 ggccagccaa aacttccggt caacatgcaa ccgcaattgt tgcatcgccc cagcctccgt 541 ccttcgtcgt tattatcatt atcatcgacg ttttagccac aggtgcaggg aaaacagctc 601 aatttttgga tgtcagccag aagtggacgc agaatgacca ctccgggcac cctatatcgg 661 ttggccagtg gcgcagctgc cacacctgcc acgcccacga acagcctata cgcccagccg 721 cccaagccat atgccgtggg ctcgatccca agcggatcgg agcggaatcg cctgctggaa 781 ctgctgaggg cccccaacag cctgacctcg cccaccctgg aaccctcctc caagggactg 841 ctcaatggac ccgggcagaa caactgcttc ctcaactgtg ccgtacaggt cttgtggcac 901 ttggacgcct ttcgacgatc gtttcgcggc ctaaatcagc acgtatgcgg cggccaagac 961 tgcatcttct gcgctctaaa ggaactcttc cagcagctgc agaccagttc ggaaccggcc 1021 ttgtgtccgg agccactgcg tcgagccttg gccagtggtc cgctggcagg acgacgcttc 1081 ccccttggat gcctgggcga tgccgcagag tgcttcgagc tcctgctgca ccgcgtccac 1141 tcgcacatct cgccggatga cggcgactcc tgcgagtcct ccgcctgcat tgcccaccga 1201 aggttcgcca tgcgcgtcat cgagcagagc gtctgcaagt gcggagccaa ctccgagcag 1261 ctgcccttca cccagatggt ccactacgtc tccgcctcgg ccttgacctc ccagaagagt 1321 ctggccctgc agtcgcacca gcagctgagt ttcggccaac ttctgagggc cgccggcaac 1381 atgggcgaca tacgcgattg tccgaacacc tgtggcgcca agatcggcat atgccgtgcc 1441 ctgctcaacc gtccggatgt ggtgtccatc ggcattgtct gggactcgga gcgaccggcc 1501 gccgaccagg tgcacgccgt cctgaaggcc gtgggcacca gtctgcggct gggcgacgtc 1561 ttccatcagg tcagcgagca gcggtgggcc cagcagacgc agcacgagct ggtggggatc 1621 gtctcctact acggcaagca ctacaccacc ttcttcttcc acacgaagct caaggtgtgg 1681 gtgtatttcg acgacgcgaa cgtcaaggag gtgggtccca gctgggaggg cgtggtggac 1741 aagtgcagcc gaggcagata ccagcccctg ttgctcctct acgcggttcc ccagcaggga 1801 ggaggaggag gagtcggagg aggagttccg gatgcagtga ccattccaac gagtgccccg 1861 gtgattcgtc gcgccgtgac tcccagtccc gagaagccca gtttgggcag cacccgacgg 1921 gccattaccc ccacgcccct gaggacgccg cccatgccca ccaacgatta ccagaacctg 1981 agtgtcatcc agaagagcat ctttccgggc tacctgatga gcagcgacga gacggacgcc 2041 tacatcagta ggaagacggt ggagcatgtg ctgagtgccc agtaccagaa tctgagtgtg 2101 atccaggaca agatagtagc tcctccagga ggagcaacac cagctaacca acaaaatgcc 2161 gacaaggatg gaggcttcct cagccgcaag cccatcgagg cggtgctgag tgcccagctg 2221 gccaggcggc agcacctgca gctgcagcgc agccacagtg cggagtccag ttcgggccac 2281 gcctcctcct ccaacgggag cagcccgccc agcgatgggc tcaccatgcc ggagcacctc 2341 aaccagccgc gtcgtcggga ctcgggcaac tggtcggggg atcggaacag cgccagttcg 2401 gccagctcca ccaccctgga caatccctat ctgtacatgg tggccaagag gggtgtggcc 2461 gcggtgccgc agagtcccac gcgacacggt ctgccctacg atcccggcta cgactccttc 2521 tcgctcagct ccacggactc gtatccgccg aagcacgccc tgaatcccca gctggccaag 2581 attcccgagg cggccatggg tgcgatggtg ccgaatgtgg tgccccatgg acatggtcag 2641 ctggccctgt cgggggactg cgagaagctc tgccacgagg cggatcagct gctggagaag 2701 tcgcgactgg tggaggagtc gcacgacctg gaaacagcac tcgtcctctg caatgcggcc 2761 gccggaaggg cgagggcggc catggatgcg ccgtacagca atccgcacac catgaccttt 2821 gcccggatga agcacaacac gtgcgtgatg cgggcgagga gcctgcaccg ccgcattctg 2881 gtggagaagg gggcggagac ggaggccatg ccggaactga agcacatgcg ggagggcagc 2941 accagcagcg tgaagcatgt gcgccagaac agcaaggatc gcacgctgga gaaggagcag 3001 cagttgcagc agcagcagca gcagcagcag ttgcagttcc agcagctgca gcagcagatc 3061 cccgccagca tcgagatcta tgccacgctg cccaagcgca agagtcccct gaagacgctg 3121 gcctcctcgg cggccgcctg cgacgacaat gccatcgagt acgagcagca ggtgaccacc 3181 accagtagtc ccgggaagcc ggagcgggag agtcgctccc tgttcggccg gaaggacaag 3241 gacaaggaga aggagaagcg cagtcgcagc gaggatcgca acaagctgac ccgcgagttc 3301 tcgctcaccg aaacgctgct tgtgaacgcc aaggacacgc tgaagaagca caaggaggac 3361 aaggacgaga agaaggagaa ggacaagagc ggcaagaagc agcacaagat caggcgcaag 3421 ctcctgatgg gcggcctcat ccggcgcaag aaccgctcca tgcccgatct caccgaggcg 3481 gtggacgacg gagtggcctc cagtgggaat caccaccatc tgccgcacta ctccaccaac 3541 caagggggag tgaccacggc ggcgggcacc cttctaggca gctccgtgga cgacagtgcc 3601 gtgggtctgg gcaagcatgg ccagcacggc atgagtggct acatctccga gggccacttt 3661 gactacccgg gctcgagttc cgcgagcgga ggaggcagca atgctggcag caatcccaat 3721 ccgaatctcg agcggagcaa gctgatgcgc aagagcttcc atggcagcgg caggcagttg 3781 actatggtgc ccaaggtggc gccaccgccg cccatgcgca ccagctccac cctgaccccc 3841 cagcagcagc agcagttcca ccacgaggcc aacctgtcca atctctcggc tatgagctcg 3901 aacacctcga tcagcgagga ctcctgccag acgatcatca ccacctgcgc ccaggttcac 3961 tcggagcaga gtccgctgaa ggatctgcaa atgctgcagt ctgccgttgg ccaggatgag 4021 ctgcccctgc cgctgccgcc catggaactg cctccgtacc ccagtccgcc gcactccgcc 4081 tgccactcgc ggcaggccag cgaggatttc ccgccgccac cgccgcccga attggacctg 4141 gaacccctca accagcagct cagccagctg caggccctcg aggcggccag caagcaccag 4201 cgccagcagc tggactccct ggagggcacc accagcatcc tggcccagct gcagcagcgc 4261 cagcatctgc tcaagctgcg caaggagcag caggccagcc acccggtgga cgccaactgg 4321 ctgaaggagc tgcaggccaa gcaggccagc gatctgcggg ccatgcagcg caagctggag 4381 gcctcttccc cttcgagtgt gcgggatctg gcccaccgct tcgagcagac ctccattcga 4441 tcctacgcct cgcaggagct gctctcccag gcgggaggac agccggtggg tcagctgcgc 4501 acccagatga acggactgcc cagtggcggg gcaggggcat ccaagctgga tgtggatgag 4561 gtggactcga tgccggcggt gaggagcacc caccaactgc tgcccaagcc caagtacgag 4621 atgagccaat cgcagatcgc cgaggagatc cgcgaggtgg agctgctcaa cacgatggtg 4681 cagcagacac tcaaccagaa cggagtcgct gcgccaccca agcgggtgaa gaagaagagc 4741 gtctccttct gcgaccaggt gatcctggtg gccaccgcag ggaacgagga ggacgacgac 4801 ttcataccca atcccatact ggagcgggtt ctccgcactg cccagcatcc caacgagaag 4861 gtcaccgccc agatgatcca gcagcagcag cagaatatgc tgcgcttgca aacggaggcg 4921 cagccgcgtc agcagttgca gcagcagcag caacagttgc agcagcaact gcaacagcag 4981 cagcagcagc catcgcccat gttgggccag cgaccagcgg cagccgcagc ggatatgcag 5041 cgatatgtgc agaggatgca acagcagcag cagcagcagc aacatcagga gctgctacgc 5101 cagcagcagc agcagcagca gcaacagcag cagcagcaac atcgcaccag catgagcggc 5161 atagccagcc agcagcacct gcagcaaatg gacgcacagt acaccaccat gccgcgtccc 5221 ctgcaccatc cgccacctca gctgggcagc tactcggtgc acctgcagaa gcaccagcaa 5281 ctgcagcagc agcagcagca acagttgcaa cagcagcagc agcagcaaca gcaggcctac 5341 ttcagcaacg gcaatgtggc gaccaccgag caagtgcctt tgccttcgcc ctaccagcga 5401 gtgcccctgc cacatggcta tcaaccagcg gtgcaagcag caacagctgg accctactac 5461 ccactgccca atgcccagca gcatcagcag cagcagcaac agcagcaaca gcagcagcag 5521 ttgcagctgc aacagcaaca gctgatggcc aagcccgtgc agaagaaggt gagctttgag 5581 ccggggacca agggcgaagc cgagtgcctg ccaccgccgc cgccgcaaaa gaatggactg 5641 cccgagccgg cgggatcacc aggagcaccg tcgggggcag cagccgggcc cgggggcaac 5701 tcctcggccg ccatcaccgc catacccacc cgcgtctaca acaatgccat cgtgaaggcc 5761 tcggccaagg ccgtcgagtg caacttgtgc cgcaagcggc atgtgatcgc gccggcggtt 5821 tactgcacca actgcgagta ctacctgcag atgctgaacc agcgcagatg atgatgacga 5881 ccctggttgt ggaccgtctc tagtgcaact ttctagccgt acatggaacc cgttaatctc 5941 aagcaatgca atgctgccac gtcgccaata aggatccgcc aaggatgtac atagcatggt 6001 tacaaatacg taggtctaag gacgaagggc tggcgggcga ctcgaggatc ggggcggaac 6061 gcagaaacgg agggggaaca cgcacagtcc ttctatggtt ccacatgaga agctcccgct 6121 gtggcacaca acccacccac cactcaccac ccactcatcc atccatgtcc atgtccccaa 6181 gcacacgcac acaagcatat tgtacacgcc catccacata tacttgccct gaggccctaa 6241 gctgggttgt aaacgatgca gctgatcagc tgctgcaccg tttacagcct gctcagcgcc 6301 aaccgtcgcc ccattggaca tcgatcgctt gactaaatgc attcccagat actaaaaact 6361 aaagcacccg aagcccggcc agtccttcgt gttctttttt ttccacaacg aattttattt 6421 acatttttta cctaagccta ccacatacga tttattcgcc agcagtttga aactcagtcg 6481 ctgagcttcc ttgtgcgtgc tgttgtccaa cgacacacgc attccatttt tttttaaaat 6541 tttttttgta attcttaatt tcagactaag catacatatt tttttaattt cgtacttaat 6601 taggcctaac gtaagcttac tcttttgtgt cttgtgcatt taaacgattc cgtgtattta 6661 tagtgttaat actactttta cagtttatac attattatat gaagattata tatttttata 6721 atgacttttg aaagaagatt tatctttgca gcatacgagc agcgagaaaa gagatgtcaa 6781 gcatccacaa gaatggtaaa gaatcatttt ttctaaataa at