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LOCUS XM_070218347 6530 bp mRNA linear INV 09-DEC-2024 echinus (ec), transcript variant X3, mRNA. ACCESSION XM_070218347 VERSION XM_070218347.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6530 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6530 /gene="ec" /note="ubiquitin specific peptidase echinus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054960" CDS 279..5579 /gene="ec" /codon_start=1 /product="uncharacterized protein ec isoform X1" /protein_id="XP_070074448.1" /db_xref="GeneID:108054960" /translation="MIKFRYKRKEPTNLVVTPAEGGGGSPSAPGTTVAPTGVVTSPIT VPVQMHHPQLSHLISNNGGTLPRSSPRKLNLDGGDKSATLTRQQSKQKSVSALAKVAS SVELAVMGYNGNGNSMNGINMAGNSERDRCINAVIELFQQLQTSSEPALCPEPLRRAL ASGPLAGRRFPLGCLGDAAECFELLLHRVHSHISPDDGDSCESSACIAHRRFAMRVIE QSVCKCGANSEQLPFTQMVHYVSASALTSQKSLALQSHQQLSFGQLLRAAGNMGDIRD CPNTCGAKIGICRALLNRPDVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQV SEQRWAQQTQHELVGIVSYYGKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKC SRGRYQPLLLLYAVPQQGGGGGVGGGVPDAVTIPTSAPVIRRAVTPSPEKPSLGSTRR AITPTPLRTPPMPTNDYQNLSVIQKSIFPGYLMSSDETDAYISRKTVEHVLSAQYQNL SVIQDKIVAPPGGATPANQQNADKDGGFLSRKPIEAVLSAQLARRQHLQLQRSHSAES SSGHASSSNGSSPPSDGLTMPEHLNQPRRRDSGNWSGDRNSASSASSTTLDNPYLYMV AKRGVAAVPQSPTRHGLPYDPGYDSFSLSSTDSYPPKHALNPQLAKIPEAAMGAMVPN VVPHGHGQLALSGDCEKLCHEADQLLEKSRLVEESHDLETALVLCNAAAGRARAAMDA PYSNPHTMTFARMKHNTCVMRARSLHRRILVEKGAETEAMPELKHMREGSTSSVKHVR QNSKDRTLEKEQQLQQQQQQQQLQFQQLQQQIPASIEIYATLPKRKSPLKTLASSAAA CDDNAIEYEQQVTTTSSPGKPERESRSLFGRKDKDKEKEKRSRSEDRNKLTREFSLTE TLLVNAKDTLKKHKEDKDEKKEKDKSGKKQHKIRRKLLMGGLIRRKNRSMPDLTEAVD DGVASSGNHHHLPHYSTNQGGVTTAAGTLLGSSVDDSAVGLGKHGQHGMSGYISEGHF DYPGSSSASGGGSNAGSNPNPNLERSKLMRKSFHGSGRQLTMVPKVAPPPPMRTSSTL TPQQQQQFHHEANLSNLSAMSSNTSISEDSCQTIITTCAQVHSEQSPLKDLQMLQSAV GQDELPLPLPPMELPPYPSPPHSACHSRQASEDFPPPPPPELDLEPLNQQLSQLQALE AASKHQRQQLDSLEGTTSILAQLQQRQHLLKLRKEQQASHPVDANWLKELQAKQASDL RAMQRKLEASSPSSVRDLAHRFEQTSIRSYASQELLSQAGGQPVGQLRTQMNGLPSGG AGASKLDVDEVDSMPAVRSTHQLLPKPKYEMSQSQIAEEIREVELLNTMVQQTLNQNG VAAPPKRVKKKSVSFCDQVILVATAGNEEDDDFIPNPILERVLRTAQHPNEKVTAQMI QQQQQNMLRLQTEAQPRQQLQQQQQQLQQQLQQQQQQPSPMLGQRPAAAAADMQRYVQ RMQQQQQQQQHQELLRQQQQQQQQQQQQQHRTSMSGIASQQHLQQMDAQYTTMPRPLH HPPPQLGSYSVHLQKHQQLQQQQQQQLQQQQQQQQQAYFSNGNVATTEQVPLPSPYQR VPLPHGYQPAVQAATAGPYYPLPNAQQHQQQQQQQQQQQQLQLQQQQLMAKPVQKKVS FEPGTKGEAECLPPPPPQKNGLPEPAGSPGAPSGAAAGPGGNSSAAITAIPTRVYNNA IVKASAKAVECNLCRKRHVIAPAVYCTNCEYYLQMLNQRR" misc_feature <807..1430 /gene="ec" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <5487..>5555 /gene="ec" /note="protein kinase C conserved region 1 (C1 domain) superfamily; Region: C1; cl00040" /db_xref="CDD:412127" ORIGIN 1 agttcacatg gaattacctg ttttcttttt gtttttcggc tattgattct ttttgaaatt 61 cgacgagcat gtgggtccgg tccgcatcaa aaatcatagc ggtccaaatg gcttaagacc 121 gccaaccgcc aacttgtttt ttcctcgcct tttgtgaaga tcttttggta tgtaaatgcc 181 tggcagcccg cagccttcgt ggaaacctgc tacgaacagt gacatgttgg tagtgagaag 241 gcactaggct ctgattacca ttaccggacg acagcaagat gatcaagttc cgctacaaga 301 ggaaggaacc caccaatttg gtggtgactc cagcagaagg aggaggagga tcgccaagtg 361 ccccgggaac tacagttgcc ccaactggag ttgtaacctc ccctattacc gtgcccgtgc 421 agatgcacca cccccaactg agccacctga tcagcaacaa tggaggcact ctgcccagga 481 gcagtccccg gaaactcaat ctcgatggag gcgacaagtc ggccactttg acccgccagc 541 agtccaagca gaagtcggtc agtgctttgg ccaaggtggc cagcagcgtg gagttggccg 601 taatgggcta caatggcaac gggaatagca tgaacggcat caacatggcg ggaaactcgg 661 aaagggatcg gtgcatcaat gcggttatcg aactcttcca gcagctgcag accagttcgg 721 aaccggcctt gtgtccggag ccactgcgtc gagccttggc cagtggtccg ctggcaggac 781 gacgcttccc ccttggatgc ctgggcgatg ccgcagagtg cttcgagctc ctgctgcacc 841 gcgtccactc gcacatctcg ccggatgacg gcgactcctg cgagtcctcc gcctgcattg 901 cccaccgaag gttcgccatg cgcgtcatcg agcagagcgt ctgcaagtgc ggagccaact 961 ccgagcagct gcccttcacc cagatggtcc actacgtctc cgcctcggcc ttgacctccc 1021 agaagagtct ggccctgcag tcgcaccagc agctgagttt cggccaactt ctgagggccg 1081 ccggcaacat gggcgacata cgcgattgtc cgaacacctg tggcgccaag atcggcatat 1141 gccgtgccct gctcaaccgt ccggatgtgg tgtccatcgg cattgtctgg gactcggagc 1201 gaccggccgc cgaccaggtg cacgccgtcc tgaaggccgt gggcaccagt ctgcggctgg 1261 gcgacgtctt ccatcaggtc agcgagcagc ggtgggccca gcagacgcag cacgagctgg 1321 tggggatcgt ctcctactac ggcaagcact acaccacctt cttcttccac acgaagctca 1381 aggtgtgggt gtatttcgac gacgcgaacg tcaaggaggt gggtcccagc tgggagggcg 1441 tggtggacaa gtgcagccga ggcagatacc agcccctgtt gctcctctac gcggttcccc 1501 agcagggagg aggaggagga gtcggaggag gagttccgga tgcagtgacc attccaacga 1561 gtgccccggt gattcgtcgc gccgtgactc ccagtcccga gaagcccagt ttgggcagca 1621 cccgacgggc cattaccccc acgcccctga ggacgccgcc catgcccacc aacgattacc 1681 agaacctgag tgtcatccag aagagcatct ttccgggcta cctgatgagc agcgacgaga 1741 cggacgccta catcagtagg aagacggtgg agcatgtgct gagtgcccag taccagaatc 1801 tgagtgtgat ccaggacaag atagtagctc ctccaggagg agcaacacca gctaaccaac 1861 aaaatgccga caaggatgga ggcttcctca gccgcaagcc catcgaggcg gtgctgagtg 1921 cccagctggc caggcggcag cacctgcagc tgcagcgcag ccacagtgcg gagtccagtt 1981 cgggccacgc ctcctcctcc aacgggagca gcccgcccag cgatgggctc accatgccgg 2041 agcacctcaa ccagccgcgt cgtcgggact cgggcaactg gtcgggggat cggaacagcg 2101 ccagttcggc cagctccacc accctggaca atccctatct gtacatggtg gccaagaggg 2161 gtgtggccgc ggtgccgcag agtcccacgc gacacggtct gccctacgat cccggctacg 2221 actccttctc gctcagctcc acggactcgt atccgccgaa gcacgccctg aatccccagc 2281 tggccaagat tcccgaggcg gccatgggtg cgatggtgcc gaatgtggtg ccccatggac 2341 atggtcagct ggccctgtcg ggggactgcg agaagctctg ccacgaggcg gatcagctgc 2401 tggagaagtc gcgactggtg gaggagtcgc acgacctgga aacagcactc gtcctctgca 2461 atgcggccgc cggaagggcg agggcggcca tggatgcgcc gtacagcaat ccgcacacca 2521 tgacctttgc ccggatgaag cacaacacgt gcgtgatgcg ggcgaggagc ctgcaccgcc 2581 gcattctggt ggagaagggg gcggagacgg aggccatgcc ggaactgaag cacatgcggg 2641 agggcagcac cagcagcgtg aagcatgtgc gccagaacag caaggatcgc acgctggaga 2701 aggagcagca gttgcagcag cagcagcagc agcagcagtt gcagttccag cagctgcagc 2761 agcagatccc cgccagcatc gagatctatg ccacgctgcc caagcgcaag agtcccctga 2821 agacgctggc ctcctcggcg gccgcctgcg acgacaatgc catcgagtac gagcagcagg 2881 tgaccaccac cagtagtccc gggaagccgg agcgggagag tcgctccctg ttcggccgga 2941 aggacaagga caaggagaag gagaagcgca gtcgcagcga ggatcgcaac aagctgaccc 3001 gcgagttctc gctcaccgaa acgctgcttg tgaacgccaa ggacacgctg aagaagcaca 3061 aggaggacaa ggacgagaag aaggagaagg acaagagcgg caagaagcag cacaagatca 3121 ggcgcaagct cctgatgggc ggcctcatcc ggcgcaagaa ccgctccatg cccgatctca 3181 ccgaggcggt ggacgacgga gtggcctcca gtgggaatca ccaccatctg ccgcactact 3241 ccaccaacca agggggagtg accacggcgg cgggcaccct tctaggcagc tccgtggacg 3301 acagtgccgt gggtctgggc aagcatggcc agcacggcat gagtggctac atctccgagg 3361 gccactttga ctacccgggc tcgagttccg cgagcggagg aggcagcaat gctggcagca 3421 atcccaatcc gaatctcgag cggagcaagc tgatgcgcaa gagcttccat ggcagcggca 3481 ggcagttgac tatggtgccc aaggtggcgc caccgccgcc catgcgcacc agctccaccc 3541 tgacccccca gcagcagcag cagttccacc acgaggccaa cctgtccaat ctctcggcta 3601 tgagctcgaa cacctcgatc agcgaggact cctgccagac gatcatcacc acctgcgccc 3661 aggttcactc ggagcagagt ccgctgaagg atctgcaaat gctgcagtct gccgttggcc 3721 aggatgagct gcccctgccg ctgccgccca tggaactgcc tccgtacccc agtccgccgc 3781 actccgcctg ccactcgcgg caggccagcg aggatttccc gccgccaccg ccgcccgaat 3841 tggacctgga acccctcaac cagcagctca gccagctgca ggccctcgag gcggccagca 3901 agcaccagcg ccagcagctg gactccctgg agggcaccac cagcatcctg gcccagctgc 3961 agcagcgcca gcatctgctc aagctgcgca aggagcagca ggccagccac ccggtggacg 4021 ccaactggct gaaggagctg caggccaagc aggccagcga tctgcgggcc atgcagcgca 4081 agctggaggc ctcttcccct tcgagtgtgc gggatctggc ccaccgcttc gagcagacct 4141 ccattcgatc ctacgcctcg caggagctgc tctcccaggc gggaggacag ccggtgggtc 4201 agctgcgcac ccagatgaac ggactgccca gtggcggggc aggggcatcc aagctggatg 4261 tggatgaggt ggactcgatg ccggcggtga ggagcaccca ccaactgctg cccaagccca 4321 agtacgagat gagccaatcg cagatcgccg aggagatccg cgaggtggag ctgctcaaca 4381 cgatggtgca gcagacactc aaccagaacg gagtcgctgc gccacccaag cgggtgaaga 4441 agaagagcgt ctccttctgc gaccaggtga tcctggtggc caccgcaggg aacgaggagg 4501 acgacgactt catacccaat cccatactgg agcgggttct ccgcactgcc cagcatccca 4561 acgagaaggt caccgcccag atgatccagc agcagcagca gaatatgctg cgcttgcaaa 4621 cggaggcgca gccgcgtcag cagttgcagc agcagcagca acagttgcag cagcaactgc 4681 aacagcagca gcagcagcca tcgcccatgt tgggccagcg accagcggca gccgcagcgg 4741 atatgcagcg atatgtgcag aggatgcaac agcagcagca gcagcagcaa catcaggagc 4801 tgctacgcca gcagcagcag cagcagcagc aacagcagca gcagcaacat cgcaccagca 4861 tgagcggcat agccagccag cagcacctgc agcaaatgga cgcacagtac accaccatgc 4921 cgcgtcccct gcaccatccg ccacctcagc tgggcagcta ctcggtgcac ctgcagaagc 4981 accagcaact gcagcagcag cagcagcaac agttgcaaca gcagcagcag cagcaacagc 5041 aggcctactt cagcaacggc aatgtggcga ccaccgagca agtgcctttg ccttcgccct 5101 accagcgagt gcccctgcca catggctatc aaccagcggt gcaagcagca acagctggac 5161 cctactaccc actgcccaat gcccagcagc atcagcagca gcagcaacag cagcaacagc 5221 agcagcagtt gcagctgcaa cagcaacagc tgatggccaa gcccgtgcag aagaaggtga 5281 gctttgagcc ggggaccaag ggcgaagccg agtgcctgcc accgccgccg ccgcaaaaga 5341 atggactgcc cgagccggcg ggatcaccag gagcaccgtc gggggcagca gccgggcccg 5401 ggggcaactc ctcggccgcc atcaccgcca tacccacccg cgtctacaac aatgccatcg 5461 tgaaggcctc ggccaaggcc gtcgagtgca acttgtgccg caagcggcat gtgatcgcgc 5521 cggcggttta ctgcaccaac tgcgagtact acctgcagat gctgaaccag cgcagatgat 5581 gatgacgacc ctggttgtgg accgtctcta gtgcaacttt ctagccgtac atggaacccg 5641 ttaatctcaa gcaatgcaat gctgccacgt cgccaataag gatccgccaa ggatgtacat 5701 agcatggtta caaatacgta ggtctaagga cgaagggctg gcgggcgact cgaggatcgg 5761 ggcggaacgc agaaacggag ggggaacacg cacagtcctt ctatggttcc acatgagaag 5821 ctcccgctgt ggcacacaac ccacccacca ctcaccaccc actcatccat ccatgtccat 5881 gtccccaagc acacgcacac aagcatattg tacacgccca tccacatata cttgccctga 5941 ggccctaagc tgggttgtaa acgatgcagc tgatcagctg ctgcaccgtt tacagcctgc 6001 tcagcgccaa ccgtcgcccc attggacatc gatcgcttga ctaaatgcat tcccagatac 6061 taaaaactaa agcacccgaa gcccggccag tccttcgtgt tctttttttt ccacaacgaa 6121 ttttatttac attttttacc taagcctacc acatacgatt tattcgccag cagtttgaaa 6181 ctcagtcgct gagcttcctt gtgcgtgctg ttgtccaacg acacacgcat tccatttttt 6241 tttaaaattt tttttgtaat tcttaatttc agactaagca tacatatttt tttaatttcg 6301 tacttaatta ggcctaacgt aagcttactc ttttgtgtct tgtgcattta aacgattccg 6361 tgtatttata gtgttaatac tacttttaca gtttatacat tattatatga agattatata 6421 tttttataat gacttttgaa agaagattta tctttgcagc atacgagcag cgagaaaaga 6481 gatgtcaagc atccacaaga atggtaaaga atcatttttt ctaaataaat