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LOCUS XM_070218346 6478 bp mRNA linear INV 09-DEC-2024 echinus (ec), transcript variant X2, mRNA. ACCESSION XM_070218346 VERSION XM_070218346.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6478 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6478 /gene="ec" /note="ubiquitin specific peptidase echinus; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054960" CDS 227..5527 /gene="ec" /codon_start=1 /product="uncharacterized protein ec isoform X1" /protein_id="XP_070074447.1" /db_xref="GeneID:108054960" /translation="MIKFRYKRKEPTNLVVTPAEGGGGSPSAPGTTVAPTGVVTSPIT VPVQMHHPQLSHLISNNGGTLPRSSPRKLNLDGGDKSATLTRQQSKQKSVSALAKVAS SVELAVMGYNGNGNSMNGINMAGNSERDRCINAVIELFQQLQTSSEPALCPEPLRRAL ASGPLAGRRFPLGCLGDAAECFELLLHRVHSHISPDDGDSCESSACIAHRRFAMRVIE QSVCKCGANSEQLPFTQMVHYVSASALTSQKSLALQSHQQLSFGQLLRAAGNMGDIRD CPNTCGAKIGICRALLNRPDVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQV SEQRWAQQTQHELVGIVSYYGKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVVDKC SRGRYQPLLLLYAVPQQGGGGGVGGGVPDAVTIPTSAPVIRRAVTPSPEKPSLGSTRR AITPTPLRTPPMPTNDYQNLSVIQKSIFPGYLMSSDETDAYISRKTVEHVLSAQYQNL SVIQDKIVAPPGGATPANQQNADKDGGFLSRKPIEAVLSAQLARRQHLQLQRSHSAES SSGHASSSNGSSPPSDGLTMPEHLNQPRRRDSGNWSGDRNSASSASSTTLDNPYLYMV AKRGVAAVPQSPTRHGLPYDPGYDSFSLSSTDSYPPKHALNPQLAKIPEAAMGAMVPN VVPHGHGQLALSGDCEKLCHEADQLLEKSRLVEESHDLETALVLCNAAAGRARAAMDA PYSNPHTMTFARMKHNTCVMRARSLHRRILVEKGAETEAMPELKHMREGSTSSVKHVR QNSKDRTLEKEQQLQQQQQQQQLQFQQLQQQIPASIEIYATLPKRKSPLKTLASSAAA CDDNAIEYEQQVTTTSSPGKPERESRSLFGRKDKDKEKEKRSRSEDRNKLTREFSLTE TLLVNAKDTLKKHKEDKDEKKEKDKSGKKQHKIRRKLLMGGLIRRKNRSMPDLTEAVD DGVASSGNHHHLPHYSTNQGGVTTAAGTLLGSSVDDSAVGLGKHGQHGMSGYISEGHF DYPGSSSASGGGSNAGSNPNPNLERSKLMRKSFHGSGRQLTMVPKVAPPPPMRTSSTL TPQQQQQFHHEANLSNLSAMSSNTSISEDSCQTIITTCAQVHSEQSPLKDLQMLQSAV GQDELPLPLPPMELPPYPSPPHSACHSRQASEDFPPPPPPELDLEPLNQQLSQLQALE AASKHQRQQLDSLEGTTSILAQLQQRQHLLKLRKEQQASHPVDANWLKELQAKQASDL RAMQRKLEASSPSSVRDLAHRFEQTSIRSYASQELLSQAGGQPVGQLRTQMNGLPSGG AGASKLDVDEVDSMPAVRSTHQLLPKPKYEMSQSQIAEEIREVELLNTMVQQTLNQNG VAAPPKRVKKKSVSFCDQVILVATAGNEEDDDFIPNPILERVLRTAQHPNEKVTAQMI QQQQQNMLRLQTEAQPRQQLQQQQQQLQQQLQQQQQQPSPMLGQRPAAAAADMQRYVQ RMQQQQQQQQHQELLRQQQQQQQQQQQQQHRTSMSGIASQQHLQQMDAQYTTMPRPLH HPPPQLGSYSVHLQKHQQLQQQQQQQLQQQQQQQQQAYFSNGNVATTEQVPLPSPYQR VPLPHGYQPAVQAATAGPYYPLPNAQQHQQQQQQQQQQQQLQLQQQQLMAKPVQKKVS FEPGTKGEAECLPPPPPQKNGLPEPAGSPGAPSGAAAGPGGNSSAAITAIPTRVYNNA IVKASAKAVECNLCRKRHVIAPAVYCTNCEYYLQMLNQRR" misc_feature <755..1378 /gene="ec" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <5435..>5503 /gene="ec" /note="protein kinase C conserved region 1 (C1 domain) superfamily; Region: C1; cl00040" /db_xref="CDD:412127" ORIGIN 1 agttcacatg gaattacctg ttttcttttt gtttttcggc tattgattct ttttgaaatt 61 cgacgagcat gtgggtccgg tccgcatcaa aaatcatagc ggtccaaatg gcttaagacc 121 gccaaccgcc aacttgtttt ttcctcgcct tttgtgaaga tcttttgtga catgttggta 181 gtgagaaggc actaggctct gattaccatt accggacgac agcaagatga tcaagttccg 241 ctacaagagg aaggaaccca ccaatttggt ggtgactcca gcagaaggag gaggaggatc 301 gccaagtgcc ccgggaacta cagttgcccc aactggagtt gtaacctccc ctattaccgt 361 gcccgtgcag atgcaccacc cccaactgag ccacctgatc agcaacaatg gaggcactct 421 gcccaggagc agtccccgga aactcaatct cgatggaggc gacaagtcgg ccactttgac 481 ccgccagcag tccaagcaga agtcggtcag tgctttggcc aaggtggcca gcagcgtgga 541 gttggccgta atgggctaca atggcaacgg gaatagcatg aacggcatca acatggcggg 601 aaactcggaa agggatcggt gcatcaatgc ggttatcgaa ctcttccagc agctgcagac 661 cagttcggaa ccggccttgt gtccggagcc actgcgtcga gccttggcca gtggtccgct 721 ggcaggacga cgcttccccc ttggatgcct gggcgatgcc gcagagtgct tcgagctcct 781 gctgcaccgc gtccactcgc acatctcgcc ggatgacggc gactcctgcg agtcctccgc 841 ctgcattgcc caccgaaggt tcgccatgcg cgtcatcgag cagagcgtct gcaagtgcgg 901 agccaactcc gagcagctgc ccttcaccca gatggtccac tacgtctccg cctcggcctt 961 gacctcccag aagagtctgg ccctgcagtc gcaccagcag ctgagtttcg gccaacttct 1021 gagggccgcc ggcaacatgg gcgacatacg cgattgtccg aacacctgtg gcgccaagat 1081 cggcatatgc cgtgccctgc tcaaccgtcc ggatgtggtg tccatcggca ttgtctggga 1141 ctcggagcga ccggccgccg accaggtgca cgccgtcctg aaggccgtgg gcaccagtct 1201 gcggctgggc gacgtcttcc atcaggtcag cgagcagcgg tgggcccagc agacgcagca 1261 cgagctggtg gggatcgtct cctactacgg caagcactac accaccttct tcttccacac 1321 gaagctcaag gtgtgggtgt atttcgacga cgcgaacgtc aaggaggtgg gtcccagctg 1381 ggagggcgtg gtggacaagt gcagccgagg cagataccag cccctgttgc tcctctacgc 1441 ggttccccag cagggaggag gaggaggagt cggaggagga gttccggatg cagtgaccat 1501 tccaacgagt gccccggtga ttcgtcgcgc cgtgactccc agtcccgaga agcccagttt 1561 gggcagcacc cgacgggcca ttacccccac gcccctgagg acgccgccca tgcccaccaa 1621 cgattaccag aacctgagtg tcatccagaa gagcatcttt ccgggctacc tgatgagcag 1681 cgacgagacg gacgcctaca tcagtaggaa gacggtggag catgtgctga gtgcccagta 1741 ccagaatctg agtgtgatcc aggacaagat agtagctcct ccaggaggag caacaccagc 1801 taaccaacaa aatgccgaca aggatggagg cttcctcagc cgcaagccca tcgaggcggt 1861 gctgagtgcc cagctggcca ggcggcagca cctgcagctg cagcgcagcc acagtgcgga 1921 gtccagttcg ggccacgcct cctcctccaa cgggagcagc ccgcccagcg atgggctcac 1981 catgccggag cacctcaacc agccgcgtcg tcgggactcg ggcaactggt cgggggatcg 2041 gaacagcgcc agttcggcca gctccaccac cctggacaat ccctatctgt acatggtggc 2101 caagaggggt gtggccgcgg tgccgcagag tcccacgcga cacggtctgc cctacgatcc 2161 cggctacgac tccttctcgc tcagctccac ggactcgtat ccgccgaagc acgccctgaa 2221 tccccagctg gccaagattc ccgaggcggc catgggtgcg atggtgccga atgtggtgcc 2281 ccatggacat ggtcagctgg ccctgtcggg ggactgcgag aagctctgcc acgaggcgga 2341 tcagctgctg gagaagtcgc gactggtgga ggagtcgcac gacctggaaa cagcactcgt 2401 cctctgcaat gcggccgccg gaagggcgag ggcggccatg gatgcgccgt acagcaatcc 2461 gcacaccatg acctttgccc ggatgaagca caacacgtgc gtgatgcggg cgaggagcct 2521 gcaccgccgc attctggtgg agaagggggc ggagacggag gccatgccgg aactgaagca 2581 catgcgggag ggcagcacca gcagcgtgaa gcatgtgcgc cagaacagca aggatcgcac 2641 gctggagaag gagcagcagt tgcagcagca gcagcagcag cagcagttgc agttccagca 2701 gctgcagcag cagatccccg ccagcatcga gatctatgcc acgctgccca agcgcaagag 2761 tcccctgaag acgctggcct cctcggcggc cgcctgcgac gacaatgcca tcgagtacga 2821 gcagcaggtg accaccacca gtagtcccgg gaagccggag cgggagagtc gctccctgtt 2881 cggccggaag gacaaggaca aggagaagga gaagcgcagt cgcagcgagg atcgcaacaa 2941 gctgacccgc gagttctcgc tcaccgaaac gctgcttgtg aacgccaagg acacgctgaa 3001 gaagcacaag gaggacaagg acgagaagaa ggagaaggac aagagcggca agaagcagca 3061 caagatcagg cgcaagctcc tgatgggcgg cctcatccgg cgcaagaacc gctccatgcc 3121 cgatctcacc gaggcggtgg acgacggagt ggcctccagt gggaatcacc accatctgcc 3181 gcactactcc accaaccaag ggggagtgac cacggcggcg ggcacccttc taggcagctc 3241 cgtggacgac agtgccgtgg gtctgggcaa gcatggccag cacggcatga gtggctacat 3301 ctccgagggc cactttgact acccgggctc gagttccgcg agcggaggag gcagcaatgc 3361 tggcagcaat cccaatccga atctcgagcg gagcaagctg atgcgcaaga gcttccatgg 3421 cagcggcagg cagttgacta tggtgcccaa ggtggcgcca ccgccgccca tgcgcaccag 3481 ctccaccctg accccccagc agcagcagca gttccaccac gaggccaacc tgtccaatct 3541 ctcggctatg agctcgaaca cctcgatcag cgaggactcc tgccagacga tcatcaccac 3601 ctgcgcccag gttcactcgg agcagagtcc gctgaaggat ctgcaaatgc tgcagtctgc 3661 cgttggccag gatgagctgc ccctgccgct gccgcccatg gaactgcctc cgtaccccag 3721 tccgccgcac tccgcctgcc actcgcggca ggccagcgag gatttcccgc cgccaccgcc 3781 gcccgaattg gacctggaac ccctcaacca gcagctcagc cagctgcagg ccctcgaggc 3841 ggccagcaag caccagcgcc agcagctgga ctccctggag ggcaccacca gcatcctggc 3901 ccagctgcag cagcgccagc atctgctcaa gctgcgcaag gagcagcagg ccagccaccc 3961 ggtggacgcc aactggctga aggagctgca ggccaagcag gccagcgatc tgcgggccat 4021 gcagcgcaag ctggaggcct cttccccttc gagtgtgcgg gatctggccc accgcttcga 4081 gcagacctcc attcgatcct acgcctcgca ggagctgctc tcccaggcgg gaggacagcc 4141 ggtgggtcag ctgcgcaccc agatgaacgg actgcccagt ggcggggcag gggcatccaa 4201 gctggatgtg gatgaggtgg actcgatgcc ggcggtgagg agcacccacc aactgctgcc 4261 caagcccaag tacgagatga gccaatcgca gatcgccgag gagatccgcg aggtggagct 4321 gctcaacacg atggtgcagc agacactcaa ccagaacgga gtcgctgcgc cacccaagcg 4381 ggtgaagaag aagagcgtct ccttctgcga ccaggtgatc ctggtggcca ccgcagggaa 4441 cgaggaggac gacgacttca tacccaatcc catactggag cgggttctcc gcactgccca 4501 gcatcccaac gagaaggtca ccgcccagat gatccagcag cagcagcaga atatgctgcg 4561 cttgcaaacg gaggcgcagc cgcgtcagca gttgcagcag cagcagcaac agttgcagca 4621 gcaactgcaa cagcagcagc agcagccatc gcccatgttg ggccagcgac cagcggcagc 4681 cgcagcggat atgcagcgat atgtgcagag gatgcaacag cagcagcagc agcagcaaca 4741 tcaggagctg ctacgccagc agcagcagca gcagcagcaa cagcagcagc agcaacatcg 4801 caccagcatg agcggcatag ccagccagca gcacctgcag caaatggacg cacagtacac 4861 caccatgccg cgtcccctgc accatccgcc acctcagctg ggcagctact cggtgcacct 4921 gcagaagcac cagcaactgc agcagcagca gcagcaacag ttgcaacagc agcagcagca 4981 gcaacagcag gcctacttca gcaacggcaa tgtggcgacc accgagcaag tgcctttgcc 5041 ttcgccctac cagcgagtgc ccctgccaca tggctatcaa ccagcggtgc aagcagcaac 5101 agctggaccc tactacccac tgcccaatgc ccagcagcat cagcagcagc agcaacagca 5161 gcaacagcag cagcagttgc agctgcaaca gcaacagctg atggccaagc ccgtgcagaa 5221 gaaggtgagc tttgagccgg ggaccaaggg cgaagccgag tgcctgccac cgccgccgcc 5281 gcaaaagaat ggactgcccg agccggcggg atcaccagga gcaccgtcgg gggcagcagc 5341 cgggcccggg ggcaactcct cggccgccat caccgccata cccacccgcg tctacaacaa 5401 tgccatcgtg aaggcctcgg ccaaggccgt cgagtgcaac ttgtgccgca agcggcatgt 5461 gatcgcgccg gcggtttact gcaccaactg cgagtactac ctgcagatgc tgaaccagcg 5521 cagatgatga tgacgaccct ggttgtggac cgtctctagt gcaactttct agccgtacat 5581 ggaacccgtt aatctcaagc aatgcaatgc tgccacgtcg ccaataagga tccgccaagg 5641 atgtacatag catggttaca aatacgtagg tctaaggacg aagggctggc gggcgactcg 5701 aggatcgggg cggaacgcag aaacggaggg ggaacacgca cagtccttct atggttccac 5761 atgagaagct cccgctgtgg cacacaaccc acccaccact caccacccac tcatccatcc 5821 atgtccatgt ccccaagcac acgcacacaa gcatattgta cacgcccatc cacatatact 5881 tgccctgagg ccctaagctg ggttgtaaac gatgcagctg atcagctgct gcaccgttta 5941 cagcctgctc agcgccaacc gtcgccccat tggacatcga tcgcttgact aaatgcattc 6001 ccagatacta aaaactaaag cacccgaagc ccggccagtc cttcgtgttc ttttttttcc 6061 acaacgaatt ttatttacat tttttaccta agcctaccac atacgattta ttcgccagca 6121 gtttgaaact cagtcgctga gcttccttgt gcgtgctgtt gtccaacgac acacgcattc 6181 catttttttt taaaattttt tttgtaattc ttaatttcag actaagcata catatttttt 6241 taatttcgta cttaattagg cctaacgtaa gcttactctt ttgtgtcttg tgcatttaaa 6301 cgattccgtg tatttatagt gttaatacta cttttacagt ttatacatta ttatatgaag 6361 attatatatt tttataatga cttttgaaag aagatttatc tttgcagcat acgagcagcg 6421 agaaaagaga tgtcaagcat ccacaagaat ggtaaagaat cattttttct aaataaat