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LOCUS XM_070218341 5553 bp mRNA linear INV 09-DEC-2024 domains 1 (Gapvd1), transcript variant X2, mRNA. ACCESSION XM_070218341 VERSION XM_070218341.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5553 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5553 /gene="Gapvd1" /note="GTPase activating protein and VPS9 domains 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056079" CDS 31..5073 /gene="Gapvd1" /codon_start=1 /product="receptor-mediated endocytosis protein 6 homolog" /protein_id="XP_070074442.1" /db_xref="GeneID:108056079" /translation="MEPPAAGNLLEIMDLARTLRQEQLFIQQEQAAFAQLTGALETNA GTITKLAFVCAQQRQILNELLLARTDHDPLLSCRRASAYDSAQFMDAKQLLPYEHALA YEDLFNYLYNTPYLLALSLATADRLSLLSASQLGQIINTIATGLYGNAINTKDVELLL KLLRELIEIQLLTSEQPRRLLRSNSSSFARLYQRLVESLFSARIFLTAALHAPLMGVL SEHEIWLDLDPHKLMQTFGQKEREKRFGREEDGEEYQRNVARFHAETLGKLHSHVQVF VRSLQQSWALFPSSLRWLLQTLSQQLRQTLRHEEQEIRQLLTDLVFTHFISPAIASAD LLGIIDVNVSERMRHNLNQIVRLLQRLALNDEDSELVQLMDLLMLGQTGEDVVAILPQ QSDFERSQLAINQRELAQLVEFFRLLSGREEYDISVEERQRLQRILGRIPKPNVTPSE ARESRESQSPEKSNAKKSNKSLMSLSKATKKLAKGMSFSSNNHHPVVAAAASVAVPPP ELQNGGDLLEQCSSSHSGSNTSLSSCGVVDPLDPVLVFSLYNAGAKSKLKPLTEEEVL KMNCIGQDGSNLLPAVVTTAPMAPSSNNDDVSSLEAMRRPQDDASIGNSDNLEAISEA AHSVASSLDLEEQQERDVHENEDNLSDMVSANVSGRGTPNISGRDTPSSQVTDGDGAG GDLVHHHGVNSRAAANPQMQKMLLSKARSDIEDKFCKFELKKFEGDENVSIISDTWST DVLASDSENTLDATERGDRNFSTPLIPSAVVLPGDNNFVVEALARAGRGAPAHPQLDA SDQRSESNWSTDVLASDSEKLAEIDTDDNVSITTKSDTAAASQAAVLDDGDEDEQTPG SSGDGDPDPDPHGNVSERSQEDSAFFDAVNSYEDANLYQGASSLARSSVRTSYHVLGG EGSFQQQYKCSGASDSSGRKTTPLMGTSCMRRQTSAESSISNQSLNLEEEHHHHHHHN HNHHREHHREREHHHHHRERSALKKKKHNQEKEKEKEHRDLIDFSDCSEDKEELARRI RLEDAEQPPGLVQQLLDMFNQDEQAAIAGVPSTNVEHRRISIEQRSAIVDGRRNGILA GSMRRHQSLNYENHEIMLNSTLNMLAKTDDDKQQEMLLCAQTQQLQLEPPVVPGGAAG GANAPTKATGAIPKSISFDASADKEKQPYHRDRERDRERERDRDRERERERDRDRDRD RDRDHHGAGLFNKLKMTNIFKNRRGGGSAKNSNSNPSVAPADLRSVSFDPSAGCDNFG THYCDTSEDILAKYRRKVSSSSEATNSDSTAGNGGAAGAAAAASSSSSHLHKHMNGGQ IPGVAFGSVKQKLRTVLSRTDLHSGDFRQTSSTSSTMATPLQIYLQIQLAQCISLQRL PQISHVAEALRCLAQLERPQHGQLLAELQRDLERRQSYLQYLMRHRQQLLLRTEQLDQ LEARLRGEARSSQRCLLQALVRMYLAWSRQQEKLEQFQTEFAQLRASDERVELTEECV ESLLQELRSSADLQDEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIG KLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSL LRMSSGRVPAADDLLPVLIYVVIMANPPFLLSTVEYISCFLGKKLEGEDEFYWTLFGS VVKFIKTMDYLD" misc_feature 298..1350 /gene="Gapvd1" /note="Ras-GTPase Activating Domain of Rab5-activating protein 6; Region: RasGAP_RAP6; cd05129" /db_xref="CDD:213331" misc_feature order(445..447,562..564,568..570,574..579,595..597, 604..606,616..618,973..975,997..1002,1009..1014, 1021..1023,1084..1086,1093..1098,1105..1107,1117..1119, 1123..1125,1135..1140) /gene="Gapvd1" /note="putative Rab5 interface [polypeptide binding]; other site" /db_xref="CDD:213331" misc_feature <1744..2667 /gene="Gapvd1" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 4168..>4554 /gene="Gapvd1" /note="Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; Region: YhaN; COG4717" /db_xref="CDD:443752" misc_feature 4759..5061 /gene="Gapvd1" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" polyA_site 5553 /gene="Gapvd1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taattaacgc caaaaaaaac cagctgcacc atggagcccc cagctgctgg caatctgctg 61 gagatcatgg acctggcccg cacccttcgc caggagcagc tcttcatcca gcaggagcaa 121 gcggcctttg cccaactcac tggggccttg gaaacgaatg cggggaccat aaccaagttg 181 gcctttgtgt gcgcccagca acggcagatc ctgaacgagc tgctcctggc gcgcacggac 241 cacgatccgc tgctctcgtg ccgccgggcg agtgcctacg acagtgccca gttcatggac 301 gccaagcagc tgctgcccta cgagcacgct ttggcctacg aggatctgtt caactacctg 361 tacaacacgc cctatctgct ggccctttcg ttggccaccg cggatcgcct ctcgctgctt 421 tcggccagtc aactgggcca gataatcaac accattgcca cgggtctcta tggcaatgcc 481 atcaacacca aggacgttga attgctgctc aaattgctgc gcgaactgat agaaatccaa 541 ctgctaacca gcgagcagcc gcgtcgtttg ctaagatcca atagcagctc ctttgcgcga 601 ctctatcagc ggctggtgga gagcctattc tccgccagaa tcttcctaac cgccgctttg 661 catgctccac tcatgggcgt gctgagtgag cacgagattt ggctggatct cgatccgcac 721 aagctgatgc agacctttgg gcagaaggag cgggagaagc gcttcggacg ggaggaagac 781 ggtgaggagt accagcgaaa tgtggcgaga tttcacgcgg agacgctggg gaaactgcac 841 tcgcatgtcc aggtttttgt gcgcagtctg cagcagagtt gggccctgtt tccctcttcc 901 cttcgctggc ttttgcagac tttgagtcag cagctccgcc agactttgcg ccacgaggag 961 caggaaatcc gccagctgct caccgatctc gtgttcaccc acttcatttc accggccatt 1021 gcaagcgccg atttgctggg aatcatcgat gtaaatgtca gcgaacgaat gcgtcacaat 1081 ctcaatcaga ttgtgcgact gctgcagcga ctggcgctga acgacgagga cagcgaactg 1141 gtgcagctga tggatctgct gatgttgggc caaacgggcg aggatgtggt ggccatactg 1201 ccgcagcaga gcgactttga gcgctcccag ctggccatca atcagcggga actggcccag 1261 ctggtggagt tctttcgcct gctcagcggc cgcgaggagt acgatatatc cgtggaggag 1321 cgacagcggc tgcagaggat tctcgggagg atacccaagc ccaatgtgac gccgtcggaa 1381 gcaagggaat cgcgggaatc gcagagtccc gagaagagca acgccaagaa aagcaacaag 1441 agtctgatga gcctgagcaa ggccaccaaa aagctggcca agggcatgag tttcagtagc 1501 aacaatcatc atcctgttgt agcggctgcc gcttcagttg ctgttccccc gccagagctc 1561 cagaatggcg gcgatcttct cgagcagtgc tcctcctcgc acagcggcag caacacgagt 1621 ttgagttcct gcggcgtcgt cgatcccctg gatcccgtgc tcgttttcag cctctacaat 1681 gccggcgcca agagcaaact gaagccgctg accgaggagg aggtgctcaa gatgaactgc 1741 atcggtcagg atggcagtaa tctcctgcct gccgtggtta caaccgcacc aatggctccc 1801 tcgtcgaaca atgatgatgt gagtagtttg gaggcgatga gaagaccgca ggatgatgct 1861 tccatcggga attcagataa tttggaggcc atcagtgagg cggcccattc ggtggccagt 1921 tcgctggatt tggaggagca gcaggagcgg gatgtccatg agaacgagga caatctatcc 1981 gatatggtgt cggcgaatgt ttcgggccgt ggaacaccga atatcagtgg ccgcgatacg 2041 ccatcctccc aggtaaccga tggcgatggc gctggcgggg atctagtcca ccatcatggc 2101 gtcaattcgc gggcggcggc caatccgcaa atgcaaaaga tgctgctctc gaaggcgcga 2161 tccgatattg aggataaatt ctgcaaattc gagctgaaga agttcgaggg cgatgagaat 2221 gtgagcatta tttcggacac ctggtcgacg gatgtcctgg cctcggattc ggagaacacg 2281 ctggatgcca cggagcgggg ggatagaaac ttctctactc ccttaatacc ctccgctgtt 2341 gttcttcccg gcgataataa ctttgtggtg gaggctttgg ccagagcggg aagaggagca 2401 ccagcgcatc cccagttgga tgcctcggat cagcgatcgg agagcaactg gagcaccgat 2461 gtgctggcca gcgattcgga gaagctggcc gaaatcgata cggatgataa tgtttccata 2521 acaaccaaat cggatacggc ggcggcttcg caggcagctg ttttagatga cggcgatgag 2581 gatgagcaga cgccgggcag cagtggcgat ggggatcccg atcctgatcc ccatggcaac 2641 gtcagcgagc gcagccaaga ggattcggcc tttttcgatg cggtcaactc gtacgaggat 2701 gcgaatctct atcagggagc ctcctctttg gcccgcagtt cggtgaggac cagctaccat 2761 gtgctgggcg gcgagggaag cttccagcag cagtacaaat gcagcggagc cagcgattcc 2821 agcgggcgca agaccactcc gctgatgggc acctcttgca tgcgacgcca aacgtcggcg 2881 gagagcagca ttagcaatca gagcttgaat ctggaggagg agcatcatca tcatcatcat 2941 cacaatcaca atcaccatag ggagcaccac agggagcggg agcatcatca tcatcacagg 3001 gagagatcgg ctctgaaaaa gaagaaacac aatcaggaga aggaaaagga gaaagagcat 3061 cgggatctca tcgatttcag cgactgcagc gaggacaagg aggagctggc caggaggata 3121 cgcttagagg atgccgagca gccacctggc ctggttcagc agctcctcga tatgttcaac 3181 caggatgaac aggcagccat cgcaggagtt ccctccacta atgtagaaca ccgacgcatc 3241 tctatcgagc agcgatcggc catcgtggat ggacgacgca acggcatcct ggcgggcagc 3301 atgcgtcgcc atcagagcct caactacgag aatcacgaga taatgctcaa ctccacactc 3361 aacatgctag ccaaaaccga tgatgacaag cagcaggaga tgctgctctg tgcgcagacg 3421 cagcagctgc agctggaacc cccagttgtt ccaggaggag cagctggagg agctaatgca 3481 cccaccaagg ccaccggcgc cataccaaag agcattagtt tcgatgcgag cgcggacaag 3541 gagaagcagc cgtatcatcg cgacagggaa agggatcgcg aaagggagag ggatcgggat 3601 agagaaagag aaagggagag agatcgtgat cgagatagag atcgagatcg tgatcaccat 3661 ggagctgggc tgttcaacaa gctgaagatg accaacatat tcaagaatcg ccggggaggc 3721 ggtagtgcca agaattccaa ttccaatccc tcggtggccc cagcggattt acgcagcgtg 3781 agcttcgatc ccagcgccgg ctgcgataac ttcggcaccc actactgtga tacgagcgag 3841 gacatcctgg ccaagtaccg ccgcaaggtg agcagctcca gcgaggccac caactcggat 3901 tccacggcgg gcaacggagg agcagcagga gcagcggcag ccgcctcctc ctcctcctcg 3961 catctgcaca agcacatgaa tggagggcaa attcctggcg tggccttcgg cagcgtcaag 4021 cagaagctgc gcacggtgct ctcgcgcacg gatctgcaca gcggcgactt ccggcagacc 4081 agctccacct cctccacgat ggccacaccg ctgcagatct acctgcagat ccagctggcg 4141 cagtgcatca gcctgcagcg attgcctcag atctcgcacg tggccgaggc gctgcgctgc 4201 ttggcccagc tggagcggcc gcagcatggc cagctgctgg ccgagctgca gcgggatctg 4261 gagcgcaggc agagctacct gcagtacctg atgcgccatc gccagcagct gctgctgcgc 4321 accgagcaac tcgatcagct ggaggcccga ttgcgcggcg aggcgcgcag cagtcagaga 4381 tgcctgctgc aggccctcgt tcggatgtat ctcgcctggt cgcgacagca ggaaaagctc 4441 gagcagttcc aaaccgaatt cgctcagttg cgagccagcg atgagcgggt cgaactgacc 4501 gaggaatgcg tggagtcgct gctgcaggag ctgcgctcca gtgccgatct gcaggacgag 4561 tggcaggtgg acgccgcccg ggtggccatc gagcgaatgc tgctcgagca gatgtacgag 4621 caggtgatgt tccccaacga ggatgccgat gtgtcgcgcg acgaggtgct ctccgcgcac 4681 attggcaagc tgcagcgctt cgtgcatccc gcccatccgg cgctgtgcat cgcccaggag 4741 tatttgggcg aggcgccgtg gaccttcgcc cagcagcagc tgtgccacat ggccgcctac 4801 aagacgccgc gcgagaagct acagtgcatc atcaactgca tctcgagcat catgagcctg 4861 ctgcgcatgt ccagtggtcg cgtgcccgct gcggatgatc tgctgcccgt gctcatatac 4921 gtggtgataa tggccaatcc acccttcctg ctgtccaccg tggagtacat cagctgcttc 4981 ctgggcaaga agctcgaggg cgaggacgag ttctattgga cgctcttcgg atccgtggtg 5041 aagttcatca agaccatgga ctatctggat tagctcctct atctgtagat cttttttagc 5101 gctttatctc cactccactc gatattttct atatttatat atatgtatat ctgtgtctga 5161 tatctgatat ttgtgtaaaa atttgttaaa accctaggct aagtcgaaaa ctgcggcaga 5221 tgagacataa tccaagtcaa tgcgacccca ggaaagagaa aatcaatgtg aaatgtgaga 5281 tgtgagatgc caacgctgaa gaagatgaag atatctagat ttaggttagc attgaacgct 5341 agaagaaggc ctcgccttat gggttatcca tgatatatga tatatatagt gagctagaga 5401 acatattctt ctatttatat atacacgtac atagatatat gcatgtttat cggatcggtc 5461 taggcactgt cataagtatg tttcggaaac gaacagcaac ttaatattcc ttattgtgta 5521 acacaaaaaa taaaaaacca atataatttc aaa