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LOCUS XM_070218335 4130 bp mRNA linear INV 09-DEC-2024 (Pdfr), transcript variant X5, mRNA. ACCESSION XM_070218335 VERSION XM_070218335.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4130 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4130 /gene="Pdfr" /note="Pigment-dispersing factor receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108055818" CDS 1000..3225 /gene="Pdfr" /codon_start=1 /product="PDF receptor isoform X2" /protein_id="XP_070074436.1" /db_xref="GeneID:108055818" /translation="MTLLSNILDCGGGISAQRFARLLRQSSSSGSPSASASSSASSSS GTSFESKSMLEPTSSQNLPTGRVPILHDFDFDFDPTTTTESPGNYVLDGVASVAKMAL EPTVMDTVLPDSDPDQVLSNLNVSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYC NWTWDTLLCWPPTPAGVLARMNCPAGFHGVDTRKFAIRKCELDGRWGSRPNATEVSPP GWTDYGPCYKPEIIRLMEQMGSKNFDLYIDIAWKTRTLEIVGLCLSLFALIVSLLIFC TFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQYRRGNKEAATNTSLSVIENTPYLC EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWGFPILMTTVW ARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ ASDIEQTRKAVRAAIVLLPLLGITNILHQMAPLKTATNFAVWSYVTHFLTSFQGFFIA LIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPS ATGKRISPPHKRLNGRKPSSASIVMIHEPQQRQRLIPRLQNKAREKSRDRVDKADAET DPQADPAISRIHSKESSGGGGSTGSRNRGSKWIMGICFRGQKDKCVMPGSQKTQQIFM TSQLPPTSTLAAVATTITTTTTTAAAAKTTIATIATIATITKSKAKAKAIAKSHQMPK A" misc_feature 1468..1635 /gene="Pdfr" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1747..2583 /gene="Pdfr" /note="The pigment dispersing factor receptor, member of the class B seven-transmembrane G protein-coupled receptors; Region: 7tmB1_PDFR; cd15261" /db_xref="CDD:320389" misc_feature 1753..1830 /gene="Pdfr" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320389" misc_feature order(1768..1770,1780..1782,1906..1908,1915..1920, 1927..1929,2002..2004,2023..2025,2245..2250,2254..2256, 2260..2262,2422..2424,2431..2433,2476..2478,2488..2490) /gene="Pdfr" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320389" misc_feature 1855..1923 /gene="Pdfr" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320389" misc_feature 2002..2085 /gene="Pdfr" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320389" misc_feature 2119..2181 /gene="Pdfr" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320389" misc_feature 2236..2325 /gene="Pdfr" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320389" misc_feature 2365..2448 /gene="Pdfr" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320389" misc_feature 2467..2544 /gene="Pdfr" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320389" ORIGIN 1 tcggcttatt tgttcttaaa ataaatacaa ttttttttaa atatgtagta attttttttt 61 gtatcagtat attttagtta attaatttaa acattttttt tatcaacaat aacccagact 121 ctcttttgta tttgtatttc atagccagct caaccactga ttcttttttt agaaatgcaa 181 ttgtttaact tatttttaag aaatacgtgt taatggtcta aatgtgtccc agtctttgtt 241 ttagttgctg tgtttcctgt tcgttttttt tttgtgtagt tattttcata gctattttga 301 aagtgtgttt gtgtgtttgt tgccggcaac ggaaatttat tttcactttt attttacgtc 361 tatggagaag cggcagaagc agcagtaaac agtaaacaaa caggcaaaca aacaacagtg 421 aaacttgcaa tccaaaaaaa caacaacaaa aatgagagga aagagcgaga gattttccga 481 ttttcccaac agttcacagc agtgcagttt gtgcacagca cagtcacagt aacacagtgt 541 gtaaaatggc cgaaatgcga aaagcgaaaa ccgagtggca ttcgggcaat ggcttttccg 601 ctcggctttt tccgcttttc cgctaaggat aagttactcg gcagctagcc agattctgtc 661 ataacggctt cggcactcgt ggcgttcgtt tcgcttttcc agcaaaaatt agcagaggca 721 aattcccaat aataatttca acccgctttc gaaaacgttt ttcaagttca acctcccaca 781 caaatttttt gttgctgtgt tttcaacgcg agttttgcaa agcaaaaaaa caaaaaaaaa 841 aacagagtta aaacgccgaa aaacgcttga aaatcgaaag aaacaaaaaa acaaatattt 901 gaagcaattc cggaatccaa aacaacagaa ataaagaagc accagcagca gtagcagcag 961 caaaaccggc ggcatttcca ctatgtggtc gatggcaaaa tgaccctcct gtcgaacatc 1021 ctcgactgcg gaggtggtat ttccgcccaa cgcttcgccc gcttgctgcg ccagtccagc 1081 tcgtcaggat ccccatcagc ctccgcctcc tcatctgcgt cgtcgtcatc gggaacatcg 1141 ttcgaatcca aatccatgct ggagccgaca tcctcgcaaa acctgccgac cggacgagtg 1201 ccaatcctgc acgatttcga tttcgacttc gatccgacaa cgacaacgga atcgccggga 1261 aactacgtcc tcgatggagt tgccagtgtg gccaagatgg ccctggagcc cacggtcatg 1321 gacactgtcc tgcccgactc ggatccggat caggtcctca gtaatctcaa cgtcagcgca 1381 ccatggaatt taacgctcgc ctcggcggcg gccaccaatt ttgagaactg ctcggcgctt 1441 tttgtcaatt acaccctacc acaaacaggt ctctactgca actggacctg ggacacattg 1501 ctctgctggc cacccactcc ggctggagtc ctcgcacgaa tgaattgtcc tgccggcttt 1561 catggcgtag atacgcgtaa attcgccatc agaaagtgcg agctggacgg ccgatggggc 1621 agcaggccaa atgccaccga ggtgagtccg ccgggttgga cggattacgg gccgtgctac 1681 aagccggaga ttatccgtct catggagcag atgggcagca agaactttga tctctacata 1741 gacatagcct ggaagactag aaccctggag atcgtgggcc tctgcctctc acttttcgcc 1801 ctgatcgtct ctctgctgat cttctgcaca ttccgctccc tgcggaataa tcgcaccaag 1861 atccacaaga acctcttcgt cgccatggtg ctgcaggtga tcatccggct gaccttgtat 1921 ttggatcagt accggcgagg aaacaaggag gccgccacca acacgagcct ttcggttatt 1981 gaaaacacgc cctatttgtg tgaggcctcg tatgtacttt tggagtacgc tcgcaccgcc 2041 atgtttatgt ggatgttcat cgagggcctc tacctgcaca atatggtcac ggtggccgtt 2101 ttccagggca gctttcccct caaattcttc tcgcgactcg gctgggggtt tcccattttg 2161 atgaccaccg tttgggcgag atgtacggtg atgtatatgg acacttcgct gggcgagtgc 2221 ttgtggaact ataatctcac gccctactac tggatcctcg aaggaccacg actagcggtt 2281 atactgctga atttttgttt cctggttaat atcatacgtg tgctcgtgat gaagttgcgc 2341 caatcgcagg ccagcgatat agaacagacc cgaaaagccg ttagagcagc gatagtccta 2401 ctaccacttt tgggtattac caacatactg caccagatgg ctccgctgaa aacggcaacg 2461 aattttgcgg tctggtcgta tgtcacacac tttctcacct cgttccaggg atttttcata 2521 gcactcatct attgctttct aaacggcgag gtccgcgcag tgctgctgaa gagtctggcc 2581 acccagctgt cggttcgggg tcatccggag tgggcgccaa agagggcgtc catgtactcg 2641 ggtgcctaca acacggcacc ggatacggat gcagtgcagc cggcgggcga tccatcggcc 2701 accggaaagc ggatatcacc gccgcataaa aggctaaatg gaaggaagcc gagcagcgcc 2761 agcattgtga tgatccacga gccccaacag cgtcagagat tgataccccg cctgcagaac 2821 aaggcgcggg aaaagagcag ggatcgggtg gataaggcgg atgcggaaac ggatccccag 2881 gccgatccgg ccatctcgcg gattcacagc aaggaatcga gcggcggcgg cgggagcacg 2941 ggatcacgga atcgcggctc caagtggata atgggcatct gctttcgggg tcaaaaggac 3001 aaatgtgtga tgccaggttc gcaaaagacg caacaaatat ttatgacgtc acaattgccg 3061 ccgacgtcga cgctggcagc ggtagcaaca acaataacca caacaacaac aaccgcagca 3121 gcagcaaaaa caacaatagc aaccattgca acaatcgcaa cgataacaaa atcaaaggca 3181 aaagccaaag cgattgcaaa aagtcatcaa atgccgaaag cctaaagcat ctcgatctct 3241 atatccctct cacacacacc ctgttactcc atctccctct ctctttctgt ttctgtttcc 3301 tacggataca tgtggaaaag aaagagagag ataggaagag cctagcttag cacatgcaag 3361 cgcaactgta ctaaactaaa ctaatgagct gaaaagtatg cacgtttttt tgtatgcagc 3421 ggcttcgatt ataccgcgat aagtttcgat atatatagaa taaatatcga tcaatataca 3481 tacctacata tatccaatat ttttgtatat ttaccaacaa aatgttggat cacaattttt 3541 tttgcatata catttaaaga aaatgtgtaa tggatgttat tgatgaatgt aattgttaat 3601 ttttttttct aaataagctc aatatacata aacgtaacgg tatttacata aagcataaag 3661 aaaacatatt tacatacttg gtatttacac tgtcgcatgc aaaaagagaa acctgataga 3721 aatgtcggag cacagatcgt atattgaata tacatatgta catgtattat gtatacacac 3781 gcaaagagag tacaaagcac ttggaatggt aaagaggaac aaaaagaaac aaacggaaat 3841 tgaaattgaa attgaacgta tcataatgtc acatcatctg atctctgatc agggcgaata 3901 ttgaatattc accttaactt taagcttact gtgcattttt aaatggaata ttttgtgtgt 3961 gaagtcgcgt tcattttgat ttttttcggt ttccttttca cgcttcacgc aattttcaaa 4021 actaaaaatt caagccgaat ttaagagagg gaaccttaaa accagaacac ccagtggtca 4081 atggcaaact attacgtgta taaggctaaa tggaaaatga ataaacatga