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LOCUS XM_070218334 3578 bp mRNA linear INV 09-DEC-2024 (Pdfr), transcript variant X4, mRNA. ACCESSION XM_070218334 VERSION XM_070218334.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3578 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3578 /gene="Pdfr" /note="Pigment-dispersing factor receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108055818" CDS 325..2391 /gene="Pdfr" /codon_start=1 /product="PDF receptor isoform X1" /protein_id="XP_070074435.1" /db_xref="GeneID:108055818" /translation="MTLLSNILDCGGGISAQRFARLLRQSSSSGSPSASASSSASSSS GTSFESKSMLEPTSSQNLPTGRVPILHDFDFDFDPTTTTESPGNYVLDGVASVAKMAL EPTVMDTVLPDSDPDQVLSNLNVSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYC NWTWDTLLCWPPTPAGVLARMNCPAGFHGVDTRKFAIRKCELDGRWGSRPNATEVSPP GWTDYGPCYKPEIIRLMEQMGSKNFDLYIDIAWKTRTLEIVGLCLSLFALIVSLLIFC TFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQYRRGNKEAATNTSLSVIENTPYLC EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWGFPILMTTVW ARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ ASDIEQTRKAVRAAIVLLPLLGITNILHQMAPLKTATNFAVWSYVTHFLTSFQGFFIA LIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPS ATGKRISPPHKRLNGRKPSSASIVMIHEPQQRQRLIPRLQNKAREKSRDRVDKADAET DPQADPAISRIHSKESSGGGGSTGSRNRGSKWIMGICFRGQKVLRVPSASSVPPESVV FELSEQ" misc_feature 793..960 /gene="Pdfr" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1072..1908 /gene="Pdfr" /note="The pigment dispersing factor receptor, member of the class B seven-transmembrane G protein-coupled receptors; Region: 7tmB1_PDFR; cd15261" /db_xref="CDD:320389" misc_feature 1078..1155 /gene="Pdfr" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320389" misc_feature order(1093..1095,1105..1107,1231..1233,1240..1245, 1252..1254,1327..1329,1348..1350,1570..1575,1579..1581, 1585..1587,1747..1749,1756..1758,1801..1803,1813..1815) /gene="Pdfr" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320389" misc_feature 1180..1248 /gene="Pdfr" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320389" misc_feature 1327..1410 /gene="Pdfr" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320389" misc_feature 1444..1506 /gene="Pdfr" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320389" misc_feature 1561..1650 /gene="Pdfr" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320389" misc_feature 1690..1773 /gene="Pdfr" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320389" misc_feature 1792..1869 /gene="Pdfr" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320389" polyA_site 3578 /gene="Pdfr" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcaaatgcga gaatctgtgc gaggggcggc atttgattta tgaacgtggg gagcacaagc 61 gggccatttg accgcattac atgcaaaatg gttcaacctc ccacacaaat tttttgttgc 121 tgtgttttca acgcgagttt tgcaaagcaa aaaaacaaaa aaaaaaacag agttaaaacg 181 ccgaaaaacg cttgaaaatc gaaagaaaca aaaaaacaaa tatttgaagc aattccggaa 241 tccaaaacaa cagaaataaa gaagcaccag cagcagtagc agcagcaaaa ccggcggcat 301 ttccactatg tggtcgatgg caaaatgacc ctcctgtcga acatcctcga ctgcggaggt 361 ggtatttccg cccaacgctt cgcccgcttg ctgcgccagt ccagctcgtc aggatcccca 421 tcagcctccg cctcctcatc tgcgtcgtcg tcatcgggaa catcgttcga atccaaatcc 481 atgctggagc cgacatcctc gcaaaacctg ccgaccggac gagtgccaat cctgcacgat 541 ttcgatttcg acttcgatcc gacaacgaca acggaatcgc cgggaaacta cgtcctcgat 601 ggagttgcca gtgtggccaa gatggccctg gagcccacgg tcatggacac tgtcctgccc 661 gactcggatc cggatcaggt cctcagtaat ctcaacgtca gcgcaccatg gaatttaacg 721 ctcgcctcgg cggcggccac caattttgag aactgctcgg cgctttttgt caattacacc 781 ctaccacaaa caggtctcta ctgcaactgg acctgggaca cattgctctg ctggccaccc 841 actccggctg gagtcctcgc acgaatgaat tgtcctgccg gctttcatgg cgtagatacg 901 cgtaaattcg ccatcagaaa gtgcgagctg gacggccgat ggggcagcag gccaaatgcc 961 accgaggtga gtccgccggg ttggacggat tacgggccgt gctacaagcc ggagattatc 1021 cgtctcatgg agcagatggg cagcaagaac tttgatctct acatagacat agcctggaag 1081 actagaaccc tggagatcgt gggcctctgc ctctcacttt tcgccctgat cgtctctctg 1141 ctgatcttct gcacattccg ctccctgcgg aataatcgca ccaagatcca caagaacctc 1201 ttcgtcgcca tggtgctgca ggtgatcatc cggctgacct tgtatttgga tcagtaccgg 1261 cgaggaaaca aggaggccgc caccaacacg agcctttcgg ttattgaaaa cacgccctat 1321 ttgtgtgagg cctcgtatgt acttttggag tacgctcgca ccgccatgtt tatgtggatg 1381 ttcatcgagg gcctctacct gcacaatatg gtcacggtgg ccgttttcca gggcagcttt 1441 cccctcaaat tcttctcgcg actcggctgg gggtttccca ttttgatgac caccgtttgg 1501 gcgagatgta cggtgatgta tatggacact tcgctgggcg agtgcttgtg gaactataat 1561 ctcacgccct actactggat cctcgaagga ccacgactag cggttatact gctgaatttt 1621 tgtttcctgg ttaatatcat acgtgtgctc gtgatgaagt tgcgccaatc gcaggccagc 1681 gatatagaac agacccgaaa agccgttaga gcagcgatag tcctactacc acttttgggt 1741 attaccaaca tactgcacca gatggctccg ctgaaaacgg caacgaattt tgcggtctgg 1801 tcgtatgtca cacactttct cacctcgttc cagggatttt tcatagcact catctattgc 1861 tttctaaacg gcgaggtccg cgcagtgctg ctgaagagtc tggccaccca gctgtcggtt 1921 cggggtcatc cggagtgggc gccaaagagg gcgtccatgt actcgggtgc ctacaacacg 1981 gcaccggata cggatgcagt gcagccggcg ggcgatccat cggccaccgg aaagcggata 2041 tcaccgccgc ataaaaggct aaatggaagg aagccgagca gcgccagcat tgtgatgatc 2101 cacgagcccc aacagcgtca gagattgata ccccgcctgc agaacaaggc gcgggaaaag 2161 agcagggatc gggtggataa ggcggatgcg gaaacggatc cccaggccga tccggccatc 2221 tcgcggattc acagcaagga atcgagcggc ggcggcggga gcacgggatc acggaatcgc 2281 ggctccaagt ggataatggg catctgcttt cggggtcaaa aggtactgag agtaccgtca 2341 gcgtcatccg tgccacccga gtcagttgta tttgagttgt cagagcagta gccctaaaaa 2401 ccaaactagc cgtagatgta gccatataga agtagccaaa tagccgtaga agtagccaac 2461 gccatatagc ccacagtaac cacagtagtc agcacccatc catcaaaacg gaaatacccc 2521 ccaaaagaaa tcctaactgc atctttatga ctttacccct catcttacaa gaaaatcaag 2581 ccaaaattaa aagtagattt taatttgtac catttaaaat tccctgaaat ttccccgaga 2641 aattgtgtac tttttaaaat cttaatagag ataactcttc agcagtagat ttttctttta 2701 taaatgtaag ccttaaacta tgcattattt atttcatcat tatcacaatc ttaattttgg 2761 cttgcctttc ttgcgtccag tgtaactatg tatatatatt acttcatgta ggacagatcc 2821 gatccttcct cgagagcttt aaaccccaag tccaaattcg actaaactta ccttaacatt 2881 tctacttaat atatctgatg acaataaatt tctaatagcg ccacattctg ttctggacac 2941 gcaaatacac tcaaaaacac tcgcacacgg ttattacttg atgaattttt cagcaaaact 3001 tgagcggcat gttttatact tctattcatt tttaaaaact agattgaaat attcgttact 3061 atgcagtgtg accaaatcaa ttaaaatgaa tattaattaa aattaataat tcgactatta 3121 gatttgtgaa ctatataatt ttaaagatga gctgacggat tttatgctga atttattgtt 3181 ttctatttta tagctatatt attttattcc taatttttat gtttagtgaa attcgcttag 3241 ttttaaaaat gttatttatc acctgttatc attttttata tacctattta aataaattat 3301 ttgtatgatt tgcttttgtg tatgccatac tctaaattat ttaattgaat taaaataaaa 3361 aagaatcctt gtacgacact taatgctttt aacagactgt actttatgat ttcaagctgg 3421 tcacactgcc agtcacgatc gatcacgttc acagtcactg ccttgaattt tgctagctgc 3481 gctttgtttt gcaacgaaaa actttgccac gatcagtatt taactaatgg ggtccgcagt 3541 caaagacaca aattgaataa atacttcttt ccggctta