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LOCUS XM_070218333 3675 bp mRNA linear INV 09-DEC-2024 (Pdfr), transcript variant X3, mRNA. ACCESSION XM_070218333 VERSION XM_070218333.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3675 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3675 /gene="Pdfr" /note="Pigment-dispersing factor receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108055818" CDS 422..2488 /gene="Pdfr" /codon_start=1 /product="PDF receptor isoform X1" /protein_id="XP_070074434.1" /db_xref="GeneID:108055818" /translation="MTLLSNILDCGGGISAQRFARLLRQSSSSGSPSASASSSASSSS GTSFESKSMLEPTSSQNLPTGRVPILHDFDFDFDPTTTTESPGNYVLDGVASVAKMAL EPTVMDTVLPDSDPDQVLSNLNVSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYC NWTWDTLLCWPPTPAGVLARMNCPAGFHGVDTRKFAIRKCELDGRWGSRPNATEVSPP GWTDYGPCYKPEIIRLMEQMGSKNFDLYIDIAWKTRTLEIVGLCLSLFALIVSLLIFC TFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQYRRGNKEAATNTSLSVIENTPYLC EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWGFPILMTTVW ARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ ASDIEQTRKAVRAAIVLLPLLGITNILHQMAPLKTATNFAVWSYVTHFLTSFQGFFIA LIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPS ATGKRISPPHKRLNGRKPSSASIVMIHEPQQRQRLIPRLQNKAREKSRDRVDKADAET DPQADPAISRIHSKESSGGGGSTGSRNRGSKWIMGICFRGQKVLRVPSASSVPPESVV FELSEQ" misc_feature 890..1057 /gene="Pdfr" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1169..2005 /gene="Pdfr" /note="The pigment dispersing factor receptor, member of the class B seven-transmembrane G protein-coupled receptors; Region: 7tmB1_PDFR; cd15261" /db_xref="CDD:320389" misc_feature 1175..1252 /gene="Pdfr" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320389" misc_feature order(1190..1192,1202..1204,1328..1330,1337..1342, 1349..1351,1424..1426,1445..1447,1667..1672,1676..1678, 1682..1684,1844..1846,1853..1855,1898..1900,1910..1912) /gene="Pdfr" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320389" misc_feature 1277..1345 /gene="Pdfr" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320389" misc_feature 1424..1507 /gene="Pdfr" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320389" misc_feature 1541..1603 /gene="Pdfr" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320389" misc_feature 1658..1747 /gene="Pdfr" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320389" misc_feature 1787..1870 /gene="Pdfr" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320389" misc_feature 1889..1966 /gene="Pdfr" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320389" polyA_site 3675 /gene="Pdfr" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaacaaacaa acgaacagca aagattagac gcctaatcgg aattatgggt gccgaagttc 61 agggacaatt ctccatatat attcatctga aatactcatc taaaactttt cataaaccag 121 aagtacactt gcctacacac acaccttttc ttatttacga tctcggaaat aaactttaac 181 taggcccgtt caacctccca cacaaatttt ttgttgctgt gttttcaacg cgagttttgc 241 aaagcaaaaa aacaaaaaaa aaaacagagt taaaacgccg aaaaacgctt gaaaatcgaa 301 agaaacaaaa aaacaaatat ttgaagcaat tccggaatcc aaaacaacag aaataaagaa 361 gcaccagcag cagtagcagc agcaaaaccg gcggcatttc cactatgtgg tcgatggcaa 421 aatgaccctc ctgtcgaaca tcctcgactg cggaggtggt atttccgccc aacgcttcgc 481 ccgcttgctg cgccagtcca gctcgtcagg atccccatca gcctccgcct cctcatctgc 541 gtcgtcgtca tcgggaacat cgttcgaatc caaatccatg ctggagccga catcctcgca 601 aaacctgccg accggacgag tgccaatcct gcacgatttc gatttcgact tcgatccgac 661 aacgacaacg gaatcgccgg gaaactacgt cctcgatgga gttgccagtg tggccaagat 721 ggccctggag cccacggtca tggacactgt cctgcccgac tcggatccgg atcaggtcct 781 cagtaatctc aacgtcagcg caccatggaa tttaacgctc gcctcggcgg cggccaccaa 841 ttttgagaac tgctcggcgc tttttgtcaa ttacacccta ccacaaacag gtctctactg 901 caactggacc tgggacacat tgctctgctg gccacccact ccggctggag tcctcgcacg 961 aatgaattgt cctgccggct ttcatggcgt agatacgcgt aaattcgcca tcagaaagtg 1021 cgagctggac ggccgatggg gcagcaggcc aaatgccacc gaggtgagtc cgccgggttg 1081 gacggattac gggccgtgct acaagccgga gattatccgt ctcatggagc agatgggcag 1141 caagaacttt gatctctaca tagacatagc ctggaagact agaaccctgg agatcgtggg 1201 cctctgcctc tcacttttcg ccctgatcgt ctctctgctg atcttctgca cattccgctc 1261 cctgcggaat aatcgcacca agatccacaa gaacctcttc gtcgccatgg tgctgcaggt 1321 gatcatccgg ctgaccttgt atttggatca gtaccggcga ggaaacaagg aggccgccac 1381 caacacgagc ctttcggtta ttgaaaacac gccctatttg tgtgaggcct cgtatgtact 1441 tttggagtac gctcgcaccg ccatgtttat gtggatgttc atcgagggcc tctacctgca 1501 caatatggtc acggtggccg ttttccaggg cagctttccc ctcaaattct tctcgcgact 1561 cggctggggg tttcccattt tgatgaccac cgtttgggcg agatgtacgg tgatgtatat 1621 ggacacttcg ctgggcgagt gcttgtggaa ctataatctc acgccctact actggatcct 1681 cgaaggacca cgactagcgg ttatactgct gaatttttgt ttcctggtta atatcatacg 1741 tgtgctcgtg atgaagttgc gccaatcgca ggccagcgat atagaacaga cccgaaaagc 1801 cgttagagca gcgatagtcc tactaccact tttgggtatt accaacatac tgcaccagat 1861 ggctccgctg aaaacggcaa cgaattttgc ggtctggtcg tatgtcacac actttctcac 1921 ctcgttccag ggatttttca tagcactcat ctattgcttt ctaaacggcg aggtccgcgc 1981 agtgctgctg aagagtctgg ccacccagct gtcggttcgg ggtcatccgg agtgggcgcc 2041 aaagagggcg tccatgtact cgggtgccta caacacggca ccggatacgg atgcagtgca 2101 gccggcgggc gatccatcgg ccaccggaaa gcggatatca ccgccgcata aaaggctaaa 2161 tggaaggaag ccgagcagcg ccagcattgt gatgatccac gagccccaac agcgtcagag 2221 attgataccc cgcctgcaga acaaggcgcg ggaaaagagc agggatcggg tggataaggc 2281 ggatgcggaa acggatcccc aggccgatcc ggccatctcg cggattcaca gcaaggaatc 2341 gagcggcggc ggcgggagca cgggatcacg gaatcgcggc tccaagtgga taatgggcat 2401 ctgctttcgg ggtcaaaagg tactgagagt accgtcagcg tcatccgtgc cacccgagtc 2461 agttgtattt gagttgtcag agcagtagcc ctaaaaacca aactagccgt agatgtagcc 2521 atatagaagt agccaaatag ccgtagaagt agccaacgcc atatagccca cagtaaccac 2581 agtagtcagc acccatccat caaaacggaa atacccccca aaagaaatcc taactgcatc 2641 tttatgactt tacccctcat cttacaagaa aatcaagcca aaattaaaag tagattttaa 2701 tttgtaccat ttaaaattcc ctgaaatttc cccgagaaat tgtgtacttt ttaaaatctt 2761 aatagagata actcttcagc agtagatttt tcttttataa atgtaagcct taaactatgc 2821 attatttatt tcatcattat cacaatctta attttggctt gcctttcttg cgtccagtgt 2881 aactatgtat atatattact tcatgtagga cagatccgat ccttcctcga gagctttaaa 2941 ccccaagtcc aaattcgact aaacttacct taacatttct acttaatata tctgatgaca 3001 ataaatttct aatagcgcca cattctgttc tggacacgca aatacactca aaaacactcg 3061 cacacggtta ttacttgatg aatttttcag caaaacttga gcggcatgtt ttatacttct 3121 attcattttt aaaaactaga ttgaaatatt cgttactatg cagtgtgacc aaatcaatta 3181 aaatgaatat taattaaaat taataattcg actattagat ttgtgaacta tataatttta 3241 aagatgagct gacggatttt atgctgaatt tattgttttc tattttatag ctatattatt 3301 ttattcctaa tttttatgtt tagtgaaatt cgcttagttt taaaaatgtt atttatcacc 3361 tgttatcatt ttttatatac ctatttaaat aaattatttg tatgatttgc ttttgtgtat 3421 gccatactct aaattattta attgaattaa aataaaaaag aatccttgta cgacacttaa 3481 tgcttttaac agactgtact ttatgatttc aagctggtca cactgccagt cacgatcgat 3541 cacgttcaca gtcactgcct tgaattttgc tagctgcgct ttgttttgca acgaaaaact 3601 ttgccacgat cagtatttaa ctaatggggt ccgcagtcaa agacacaaat tgaataaata 3661 cttctttccg gctta