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LOCUS XM_070218332 3591 bp mRNA linear INV 09-DEC-2024 (Pdfr), transcript variant X2, mRNA. ACCESSION XM_070218332 VERSION XM_070218332.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3591 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3591 /gene="Pdfr" /note="Pigment-dispersing factor receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108055818" CDS 338..2404 /gene="Pdfr" /codon_start=1 /product="PDF receptor isoform X1" /protein_id="XP_070074433.1" /db_xref="GeneID:108055818" /translation="MTLLSNILDCGGGISAQRFARLLRQSSSSGSPSASASSSASSSS GTSFESKSMLEPTSSQNLPTGRVPILHDFDFDFDPTTTTESPGNYVLDGVASVAKMAL EPTVMDTVLPDSDPDQVLSNLNVSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYC NWTWDTLLCWPPTPAGVLARMNCPAGFHGVDTRKFAIRKCELDGRWGSRPNATEVSPP GWTDYGPCYKPEIIRLMEQMGSKNFDLYIDIAWKTRTLEIVGLCLSLFALIVSLLIFC TFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQYRRGNKEAATNTSLSVIENTPYLC EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWGFPILMTTVW ARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ ASDIEQTRKAVRAAIVLLPLLGITNILHQMAPLKTATNFAVWSYVTHFLTSFQGFFIA LIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPS ATGKRISPPHKRLNGRKPSSASIVMIHEPQQRQRLIPRLQNKAREKSRDRVDKADAET DPQADPAISRIHSKESSGGGGSTGSRNRGSKWIMGICFRGQKVLRVPSASSVPPESVV FELSEQ" misc_feature 806..973 /gene="Pdfr" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1085..1921 /gene="Pdfr" /note="The pigment dispersing factor receptor, member of the class B seven-transmembrane G protein-coupled receptors; Region: 7tmB1_PDFR; cd15261" /db_xref="CDD:320389" misc_feature 1091..1168 /gene="Pdfr" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320389" misc_feature order(1106..1108,1118..1120,1244..1246,1253..1258, 1265..1267,1340..1342,1361..1363,1583..1588,1592..1594, 1598..1600,1760..1762,1769..1771,1814..1816,1826..1828) /gene="Pdfr" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320389" misc_feature 1193..1261 /gene="Pdfr" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320389" misc_feature 1340..1423 /gene="Pdfr" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320389" misc_feature 1457..1519 /gene="Pdfr" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320389" misc_feature 1574..1663 /gene="Pdfr" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320389" misc_feature 1703..1786 /gene="Pdfr" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320389" misc_feature 1805..1882 /gene="Pdfr" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320389" polyA_site 3591 /gene="Pdfr" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcgaattc cgtttccaga atcgctggaa caagattata caaaaattag cagaggcaaa 61 ttcccaataa taatttcaac ccgctttcga aaacgttttt caagttcaac ctcccacaca 121 aattttttgt tgctgtgttt tcaacgcgag ttttgcaaag caaaaaaaca aaaaaaaaaa 181 cagagttaaa acgccgaaaa acgcttgaaa atcgaaagaa acaaaaaaac aaatatttga 241 agcaattccg gaatccaaaa caacagaaat aaagaagcac cagcagcagt agcagcagca 301 aaaccggcgg catttccact atgtggtcga tggcaaaatg accctcctgt cgaacatcct 361 cgactgcgga ggtggtattt ccgcccaacg cttcgcccgc ttgctgcgcc agtccagctc 421 gtcaggatcc ccatcagcct ccgcctcctc atctgcgtcg tcgtcatcgg gaacatcgtt 481 cgaatccaaa tccatgctgg agccgacatc ctcgcaaaac ctgccgaccg gacgagtgcc 541 aatcctgcac gatttcgatt tcgacttcga tccgacaacg acaacggaat cgccgggaaa 601 ctacgtcctc gatggagttg ccagtgtggc caagatggcc ctggagccca cggtcatgga 661 cactgtcctg cccgactcgg atccggatca ggtcctcagt aatctcaacg tcagcgcacc 721 atggaattta acgctcgcct cggcggcggc caccaatttt gagaactgct cggcgctttt 781 tgtcaattac accctaccac aaacaggtct ctactgcaac tggacctggg acacattgct 841 ctgctggcca cccactccgg ctggagtcct cgcacgaatg aattgtcctg ccggctttca 901 tggcgtagat acgcgtaaat tcgccatcag aaagtgcgag ctggacggcc gatggggcag 961 caggccaaat gccaccgagg tgagtccgcc gggttggacg gattacgggc cgtgctacaa 1021 gccggagatt atccgtctca tggagcagat gggcagcaag aactttgatc tctacataga 1081 catagcctgg aagactagaa ccctggagat cgtgggcctc tgcctctcac ttttcgccct 1141 gatcgtctct ctgctgatct tctgcacatt ccgctccctg cggaataatc gcaccaagat 1201 ccacaagaac ctcttcgtcg ccatggtgct gcaggtgatc atccggctga ccttgtattt 1261 ggatcagtac cggcgaggaa acaaggaggc cgccaccaac acgagccttt cggttattga 1321 aaacacgccc tatttgtgtg aggcctcgta tgtacttttg gagtacgctc gcaccgccat 1381 gtttatgtgg atgttcatcg agggcctcta cctgcacaat atggtcacgg tggccgtttt 1441 ccagggcagc tttcccctca aattcttctc gcgactcggc tgggggtttc ccattttgat 1501 gaccaccgtt tgggcgagat gtacggtgat gtatatggac acttcgctgg gcgagtgctt 1561 gtggaactat aatctcacgc cctactactg gatcctcgaa ggaccacgac tagcggttat 1621 actgctgaat ttttgtttcc tggttaatat catacgtgtg ctcgtgatga agttgcgcca 1681 atcgcaggcc agcgatatag aacagacccg aaaagccgtt agagcagcga tagtcctact 1741 accacttttg ggtattacca acatactgca ccagatggct ccgctgaaaa cggcaacgaa 1801 ttttgcggtc tggtcgtatg tcacacactt tctcacctcg ttccagggat ttttcatagc 1861 actcatctat tgctttctaa acggcgaggt ccgcgcagtg ctgctgaaga gtctggccac 1921 ccagctgtcg gttcggggtc atccggagtg ggcgccaaag agggcgtcca tgtactcggg 1981 tgcctacaac acggcaccgg atacggatgc agtgcagccg gcgggcgatc catcggccac 2041 cggaaagcgg atatcaccgc cgcataaaag gctaaatgga aggaagccga gcagcgccag 2101 cattgtgatg atccacgagc cccaacagcg tcagagattg ataccccgcc tgcagaacaa 2161 ggcgcgggaa aagagcaggg atcgggtgga taaggcggat gcggaaacgg atccccaggc 2221 cgatccggcc atctcgcgga ttcacagcaa ggaatcgagc ggcggcggcg ggagcacggg 2281 atcacggaat cgcggctcca agtggataat gggcatctgc tttcggggtc aaaaggtact 2341 gagagtaccg tcagcgtcat ccgtgccacc cgagtcagtt gtatttgagt tgtcagagca 2401 gtagccctaa aaaccaaact agccgtagat gtagccatat agaagtagcc aaatagccgt 2461 agaagtagcc aacgccatat agcccacagt aaccacagta gtcagcaccc atccatcaaa 2521 acggaaatac cccccaaaag aaatcctaac tgcatcttta tgactttacc cctcatctta 2581 caagaaaatc aagccaaaat taaaagtaga ttttaatttg taccatttaa aattccctga 2641 aatttccccg agaaattgtg tactttttaa aatcttaata gagataactc ttcagcagta 2701 gatttttctt ttataaatgt aagccttaaa ctatgcatta tttatttcat cattatcaca 2761 atcttaattt tggcttgcct ttcttgcgtc cagtgtaact atgtatatat attacttcat 2821 gtaggacaga tccgatcctt cctcgagagc tttaaacccc aagtccaaat tcgactaaac 2881 ttaccttaac atttctactt aatatatctg atgacaataa atttctaata gcgccacatt 2941 ctgttctgga cacgcaaata cactcaaaaa cactcgcaca cggttattac ttgatgaatt 3001 tttcagcaaa acttgagcgg catgttttat acttctattc atttttaaaa actagattga 3061 aatattcgtt actatgcagt gtgaccaaat caattaaaat gaatattaat taaaattaat 3121 aattcgacta ttagatttgt gaactatata attttaaaga tgagctgacg gattttatgc 3181 tgaatttatt gttttctatt ttatagctat attattttat tcctaatttt tatgtttagt 3241 gaaattcgct tagttttaaa aatgttattt atcacctgtt atcatttttt atatacctat 3301 ttaaataaat tatttgtatg atttgctttt gtgtatgcca tactctaaat tatttaattg 3361 aattaaaata aaaaagaatc cttgtacgac acttaatgct tttaacagac tgtactttat 3421 gatttcaagc tggtcacact gccagtcacg atcgatcacg ttcacagtca ctgccttgaa 3481 ttttgctagc tgcgctttgt tttgcaacga aaaactttgc cacgatcagt atttaactaa 3541 tggggtccgc agtcaaagac acaaattgaa taaatacttc tttccggctt a