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LOCUS XM_070218331 3562 bp mRNA linear INV 09-DEC-2024 (Pdfr), transcript variant X1, mRNA. ACCESSION XM_070218331 VERSION XM_070218331.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3562 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3562 /gene="Pdfr" /note="Pigment-dispersing factor receptor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108055818" CDS 309..2375 /gene="Pdfr" /codon_start=1 /product="PDF receptor isoform X1" /protein_id="XP_070074432.1" /db_xref="GeneID:108055818" /translation="MTLLSNILDCGGGISAQRFARLLRQSSSSGSPSASASSSASSSS GTSFESKSMLEPTSSQNLPTGRVPILHDFDFDFDPTTTTESPGNYVLDGVASVAKMAL EPTVMDTVLPDSDPDQVLSNLNVSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYC NWTWDTLLCWPPTPAGVLARMNCPAGFHGVDTRKFAIRKCELDGRWGSRPNATEVSPP GWTDYGPCYKPEIIRLMEQMGSKNFDLYIDIAWKTRTLEIVGLCLSLFALIVSLLIFC TFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQYRRGNKEAATNTSLSVIENTPYLC EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWGFPILMTTVW ARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ ASDIEQTRKAVRAAIVLLPLLGITNILHQMAPLKTATNFAVWSYVTHFLTSFQGFFIA LIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPS ATGKRISPPHKRLNGRKPSSASIVMIHEPQQRQRLIPRLQNKAREKSRDRVDKADAET DPQADPAISRIHSKESSGGGGSTGSRNRGSKWIMGICFRGQKVLRVPSASSVPPESVV FELSEQ" misc_feature 777..944 /gene="Pdfr" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 1056..1892 /gene="Pdfr" /note="The pigment dispersing factor receptor, member of the class B seven-transmembrane G protein-coupled receptors; Region: 7tmB1_PDFR; cd15261" /db_xref="CDD:320389" misc_feature 1062..1139 /gene="Pdfr" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320389" misc_feature order(1077..1079,1089..1091,1215..1217,1224..1229, 1236..1238,1311..1313,1332..1334,1554..1559,1563..1565, 1569..1571,1731..1733,1740..1742,1785..1787,1797..1799) /gene="Pdfr" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320389" misc_feature 1164..1232 /gene="Pdfr" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320389" misc_feature 1311..1394 /gene="Pdfr" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320389" misc_feature 1428..1490 /gene="Pdfr" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320389" misc_feature 1545..1634 /gene="Pdfr" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320389" misc_feature 1674..1757 /gene="Pdfr" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320389" misc_feature 1776..1853 /gene="Pdfr" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320389" polyA_site 3562 /gene="Pdfr" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcctgtcaa cgccgcctga tcgtcggacg tgctaaatcg aattccgttt ccagaatcgc 61 tggaacaaga ttatattcaa cctcccacac aaattttttg ttgctgtgtt ttcaacgcga 121 gttttgcaaa gcaaaaaaac aaaaaaaaaa acagagttaa aacgccgaaa aacgcttgaa 181 aatcgaaaga aacaaaaaaa caaatatttg aagcaattcc ggaatccaaa acaacagaaa 241 taaagaagca ccagcagcag tagcagcagc aaaaccggcg gcatttccac tatgtggtcg 301 atggcaaaat gaccctcctg tcgaacatcc tcgactgcgg aggtggtatt tccgcccaac 361 gcttcgcccg cttgctgcgc cagtccagct cgtcaggatc cccatcagcc tccgcctcct 421 catctgcgtc gtcgtcatcg ggaacatcgt tcgaatccaa atccatgctg gagccgacat 481 cctcgcaaaa cctgccgacc ggacgagtgc caatcctgca cgatttcgat ttcgacttcg 541 atccgacaac gacaacggaa tcgccgggaa actacgtcct cgatggagtt gccagtgtgg 601 ccaagatggc cctggagccc acggtcatgg acactgtcct gcccgactcg gatccggatc 661 aggtcctcag taatctcaac gtcagcgcac catggaattt aacgctcgcc tcggcggcgg 721 ccaccaattt tgagaactgc tcggcgcttt ttgtcaatta caccctacca caaacaggtc 781 tctactgcaa ctggacctgg gacacattgc tctgctggcc acccactccg gctggagtcc 841 tcgcacgaat gaattgtcct gccggctttc atggcgtaga tacgcgtaaa ttcgccatca 901 gaaagtgcga gctggacggc cgatggggca gcaggccaaa tgccaccgag gtgagtccgc 961 cgggttggac ggattacggg ccgtgctaca agccggagat tatccgtctc atggagcaga 1021 tgggcagcaa gaactttgat ctctacatag acatagcctg gaagactaga accctggaga 1081 tcgtgggcct ctgcctctca cttttcgccc tgatcgtctc tctgctgatc ttctgcacat 1141 tccgctccct gcggaataat cgcaccaaga tccacaagaa cctcttcgtc gccatggtgc 1201 tgcaggtgat catccggctg accttgtatt tggatcagta ccggcgagga aacaaggagg 1261 ccgccaccaa cacgagcctt tcggttattg aaaacacgcc ctatttgtgt gaggcctcgt 1321 atgtactttt ggagtacgct cgcaccgcca tgtttatgtg gatgttcatc gagggcctct 1381 acctgcacaa tatggtcacg gtggccgttt tccagggcag ctttcccctc aaattcttct 1441 cgcgactcgg ctgggggttt cccattttga tgaccaccgt ttgggcgaga tgtacggtga 1501 tgtatatgga cacttcgctg ggcgagtgct tgtggaacta taatctcacg ccctactact 1561 ggatcctcga aggaccacga ctagcggtta tactgctgaa tttttgtttc ctggttaata 1621 tcatacgtgt gctcgtgatg aagttgcgcc aatcgcaggc cagcgatata gaacagaccc 1681 gaaaagccgt tagagcagcg atagtcctac taccactttt gggtattacc aacatactgc 1741 accagatggc tccgctgaaa acggcaacga attttgcggt ctggtcgtat gtcacacact 1801 ttctcacctc gttccaggga tttttcatag cactcatcta ttgctttcta aacggcgagg 1861 tccgcgcagt gctgctgaag agtctggcca cccagctgtc ggttcggggt catccggagt 1921 gggcgccaaa gagggcgtcc atgtactcgg gtgcctacaa cacggcaccg gatacggatg 1981 cagtgcagcc ggcgggcgat ccatcggcca ccggaaagcg gatatcaccg ccgcataaaa 2041 ggctaaatgg aaggaagccg agcagcgcca gcattgtgat gatccacgag ccccaacagc 2101 gtcagagatt gataccccgc ctgcagaaca aggcgcggga aaagagcagg gatcgggtgg 2161 ataaggcgga tgcggaaacg gatccccagg ccgatccggc catctcgcgg attcacagca 2221 aggaatcgag cggcggcggc gggagcacgg gatcacggaa tcgcggctcc aagtggataa 2281 tgggcatctg ctttcggggt caaaaggtac tgagagtacc gtcagcgtca tccgtgccac 2341 ccgagtcagt tgtatttgag ttgtcagagc agtagcccta aaaaccaaac tagccgtaga 2401 tgtagccata tagaagtagc caaatagccg tagaagtagc caacgccata tagcccacag 2461 taaccacagt agtcagcacc catccatcaa aacggaaata ccccccaaaa gaaatcctaa 2521 ctgcatcttt atgactttac ccctcatctt acaagaaaat caagccaaaa ttaaaagtag 2581 attttaattt gtaccattta aaattccctg aaatttcccc gagaaattgt gtacttttta 2641 aaatcttaat agagataact cttcagcagt agatttttct tttataaatg taagccttaa 2701 actatgcatt atttatttca tcattatcac aatcttaatt ttggcttgcc tttcttgcgt 2761 ccagtgtaac tatgtatata tattacttca tgtaggacag atccgatcct tcctcgagag 2821 ctttaaaccc caagtccaaa ttcgactaaa cttaccttaa catttctact taatatatct 2881 gatgacaata aatttctaat agcgccacat tctgttctgg acacgcaaat acactcaaaa 2941 acactcgcac acggttatta cttgatgaat ttttcagcaa aacttgagcg gcatgtttta 3001 tacttctatt catttttaaa aactagattg aaatattcgt tactatgcag tgtgaccaaa 3061 tcaattaaaa tgaatattaa ttaaaattaa taattcgact attagatttg tgaactatat 3121 aattttaaag atgagctgac ggattttatg ctgaatttat tgttttctat tttatagcta 3181 tattatttta ttcctaattt ttatgtttag tgaaattcgc ttagttttaa aaatgttatt 3241 tatcacctgt tatcattttt tatataccta tttaaataaa ttatttgtat gatttgcttt 3301 tgtgtatgcc atactctaaa ttatttaatt gaattaaaat aaaaaagaat ccttgtacga 3361 cacttaatgc ttttaacaga ctgtacttta tgatttcaag ctggtcacac tgccagtcac 3421 gatcgatcac gttcacagtc actgccttga attttgctag ctgcgctttg ttttgcaacg 3481 aaaaactttg ccacgatcag tatttaacta atggggtccg cagtcaaaga cacaaattga 3541 ataaatactt ctttccggct ta