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LOCUS XM_070218328 3842 bp mRNA linear INV 09-DEC-2024 variant X4, mRNA. ACCESSION XM_070218328 VERSION XM_070218328.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3842 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3842 /gene="Actn" /note="alpha actinin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056774" CDS 280..3033 /gene="Actn" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X1" /protein_id="XP_070074429.1" /db_xref="GeneID:108056774" /translation="MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWC NSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDF IASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRK TAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKY LDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPN NYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGV QKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNS WKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQC KLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQW DRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTM EEIQGLIQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTAND MTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIG MGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRV GWEQLLTSINRNINEVENQILTRDSKGISQEQLNEFRSSFNHFDKNRTGRLSPEEFKS CLVSLGYSIGKDRQGDLDFQRILAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVID SFRILAADKPYILPDELRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGE TDL" misc_feature 370..684 /gene="Actn" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(385..387,397..399,529..531,541..549,556..561, 604..630,652..654,658..663,670..675,679..684) /gene="Actn" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(430..432,436..438,508..516) /gene="Actn" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 694..1035 /gene="Actn" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(724..726,736..738,877..885,892..897,940..966, 997..999,1003..1008,1015..1020,1024..1029) /gene="Actn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1183..1854 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1537..2220 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1537..1554 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1852..1869 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1891..2559 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2215..2232 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2602..2805 /gene="Actn" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(2629..2631,2635..2637,2641..2643,2662..2664, 2752..2754,2758..2760,2764..2766,2785..2787) /gene="Actn" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 2818..3018 /gene="Actn" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3842 /gene="Actn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taccgcgtct ctttgtgatg atggactcaa ttactacaat tacaatagcg attgcaacaa 61 attaaatcag cgtcgtgcgt ccgtgtccgt aaacgtgtgt gtgtgtgtgc ccgcgagcac 121 tgatagccga tagccaaaca aaaagcagca gcaactggat caccagcaac aacagcagca 181 ccaccaccag aagcagcgag agcgagagag agtgcagcgg gacagggaac gagctagata 241 tatacaacga gcgagcggga cttctgagag cgccacaaga tgatgatgga gaacggactc 301 tccatggagt acggagatgg gtacatggag caggaggagg agtgggagcg cgagggcctt 361 ctcgaccctg cgtgggagaa gcaacagaag aagacattta ccgcctggtg taacagtcat 421 ctgcgcaaag ccggcaccgc catcgacaac atcgaggagg acttccgcaa cggcctcaag 481 ctgatgctgc tgctggaggt gatctccggc gagacgctgc ccaagcccga tcgcggcaag 541 atgcgcttcc acaagatcgc caacgtgaac aaggctctcg acttcatcgc ctccaagggc 601 gtccacctgg tgtccattgg cgccgaggag atcgtcgatg gcaacctgaa gatgaccctg 661 ggcatgatct ggacgatcat cctgcgcttc gccatccagg acatctccgt ggaggagatg 721 accgccaagg agggtctgct gctgtggtgc cagcgcaaga cggctcctta caagaacgtc 781 aacgtacaga acttccatct gtcgttcaag gatggtctgg ccttctgcgc cctcatccat 841 cgccatcgtc cagatcttat cgactacgcc aagctgtcca aagacaatcc tctggagaat 901 cttaacactg ccttcgatgt ggccgagaag tatctggata ttccgcgcat gttggatcca 961 gatgatttga tcaacactcc gaaaccggat gaacgtgcca tcatgacgta cgtctcctgc 1021 tactaccacg ccttccaggg agcccaacag gttggaaatg tgacgcatgt acccgaaccc 1081 acaagacaat acacctacgt cccgaataat tacaatgcgg aaaccgctgc caaccgcatc 1141 tgcaaggtgc tcaaggtcaa ccaggagaac gagcgcctca tggaggagta cgagcgtctg 1201 gccagtgatt tgctggagtg gatccgccgc accatgccgt ggctgaactc ccgccaggcg 1261 gacaactcgc tggcgggcgt gcagaagaag ctggaggagt accgcaccta ccggcgcaag 1321 cacaagccgc cacgcgtcga gcagaaggcc aagctggaga cgaacttcaa cacgctgcag 1381 accaagctgc gcctgtccaa ccggcccgcc tacctgccca ccgagggcaa gaccgtctcg 1441 gacatctcca actcgtggaa gggcctcgag ctggccgaga aggccttcga ggagtggctg 1501 ctcgccgaga ccatgcgcct ggagcgcctc gagcatctgg cccagaagtt caagcacaag 1561 gccgatgccc acgaggactg gacgcgcggc aaggaggaga tgctgcagtc gcaggacttc 1621 cgccagtgca agctcaacga gctgaaggcc ctcaagaaga agcacgaagc ctttgagtct 1681 gacctggccg cccaccagga tcgcgtcgag cagatcgccg ccatcgccca ggagctgaac 1741 accctggagt accatgactg cgtgtcggtg aacgccaggt gccagcgcat ctgcgaccag 1801 tgggaccgcc tgggcgccct cacccagcgc aggcgcaccg ctttggacga ggccgagcgc 1861 attctggaga agatcgacat cttgcatttg gagttcgcga agcgggcggc gccgttcaac 1921 aactggctgg acgggacgcg cgaggatctg gtcgacatgt tcatcgtgca caccatggag 1981 gagatccagg gcctgatcca ggcgcacgac cagttcaagg cgacgctggg cgaggccgac 2041 aaggagttca acctgatcgt gaacctggtc cgcgaggtgg agtcgattgt gaagcagcac 2101 cagatccccg gcggcctgga gaacccctac accacgctga ccgccaacga tatgacgcgc 2161 aagtggagcg acgtccgcca gctggtccct cagcgcgacc agacgctggc caacgagctg 2221 cgcaagcagc agaacaacga gatgctgcgc cgccagttcg ccgagaaggc caacattgtc 2281 ggcccctgga tcgagcggca gatggacgcg gtgacggcca tcggcatggg actgcaggga 2341 tcgctggagg accagctgca ccggctcaag gagtacgagc aggccgtcta tgcctacaag 2401 ccgaacatcg aggagctgga gaagatccac caggcggtgc aggagtcgat gatcttcgag 2461 aaccgttaca ccaactacac gatggagacg ctgcgcgtcg gctgggagca gctgctcacc 2521 tcgatcaacc gcaacatcaa cgaggtggag aaccagatcc tcacccgcga ctccaagggc 2581 attagccagg agcagctgaa cgagttccgc agcagcttca atcacttcga caagaaccgc 2641 accggccgcc tgtcgcccga ggagttcaag tcgtgcctcg tctcgctggg ctactcgatc 2701 ggcaaggatc gccagggcga cctcgacttc cagcgcatcc tcgcggtcgt cgatccgaac 2761 aacactggct acgtgcactt cgacgccttc ctcgacttca tgacccgcga gagcaccgat 2821 accgacactg ccgaacaagt gatcgactcg ttccgaatcc tggcagccga taagccatac 2881 attttgcccg acgaactgcg ccgcgagttg cccccagacc aggccgagta ctgcatccag 2941 cgcatgccgc cctacaaggg acccaacgga gtgcccggcg ccctggacta catgtccttc 3001 agcacagctc tctacggcga gaccgacttg taggagcacc tgggcctggg catcgaggca 3061 ccacccggat ccgagcagag ccagatcata taataatgat aacctttaat aataataata 3121 ttaataaaca tagatttatt atacctacac tcgtaacggt agctgcagaa gaacttcaga 3181 gcatcatgtg aggatgaata tatttattaa tttccgtctc gagccgatgt atgcgaccca 3241 cacatacaac atacaacaaa aaacaaaagt gaaaaacaag aaattatgaa atgaaacaca 3301 cacgtacatc aaatacattt gtaaaacagc aaggcaacca tcaagtgcat atcgaatatt 3361 taaatctaat tctaaacacc aagtccaaaa caaaacaaac aaacaaaaac atcaacaaaa 3421 cgctaaaaac attatttttt gaaatttatg ttaataaaaa caaaatccat acataaaaac 3481 caaaaacaaa tgaaatcgcc aaatccgaaa gagattactt tctttgaaat aaaaacataa 3541 atactgaggg ggagggagat agccaaacaa agtggcgaaa cttgagacta cttccgcttc 3601 cgtttacgaa ccttcaagaa ccagatagac agagacggca atactgctag agacagagag 3661 agatagagag agaccactac acgaaagaaa gagttctgtt ctatattcac acaattacta 3721 tagctattta ttcatcgaca atttcagaac attagctttc gcttatctcg aatatattca 3781 cattttcaga acattttaca caactcagat aacgaatgat gaataaagcg atttcttggt 3841 ga