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LOCUS XM_070218327 3899 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_070218327 VERSION XM_070218327.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3899 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3899 /gene="Actn" /note="alpha actinin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108056774" CDS 337..3090 /gene="Actn" /codon_start=1 /product="alpha-actinin, sarcomeric isoform X1" /protein_id="XP_070074428.1" /db_xref="GeneID:108056774" /translation="MMMENGLSMEYGDGYMEQEEEWEREGLLDPAWEKQQKKTFTAWC NSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDF IASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRK TAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKY LDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPN NYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGV QKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNS WKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQC KLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQW DRLGALTQRRRTALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTM EEIQGLIQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTAND MTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIG MGLQGSLEDQLHRLKEYEQAVYAYKPNIEELEKIHQAVQESMIFENRYTNYTMETLRV GWEQLLTSINRNINEVENQILTRDSKGISQEQLNEFRSSFNHFDKNRTGRLSPEEFKS CLVSLGYSIGKDRQGDLDFQRILAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVID SFRILAADKPYILPDELRRELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGE TDL" misc_feature 427..741 /gene="Actn" /note="first calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt1; cd21214" /db_xref="CDD:409063" misc_feature order(442..444,454..456,586..588,598..606,613..618, 661..687,709..711,715..720,727..732,736..741) /gene="Actn" /note="actin binding site [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature order(487..489,493..495,565..573) /gene="Actn" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:409063" misc_feature 751..1092 /gene="Actn" /note="second calponin homology (CH) domain found in the alpha-actinin family; Region: CH_ACTN_rpt2; cd21216" /db_xref="CDD:409065" misc_feature order(781..783,793..795,934..942,949..954,997..1023, 1054..1056,1060..1065,1072..1077,1081..1086) /gene="Actn" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409065" misc_feature 1240..1911 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1594..2277 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 1594..1611 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1909..1926 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 1948..2616 /gene="Actn" /note="Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; Region: SPEC; cd00176" /db_xref="CDD:238103" misc_feature 2272..2289 /gene="Actn" /note="linker region [active]" /db_xref="CDD:238103" misc_feature 2659..2862 /gene="Actn" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(2686..2688,2692..2694,2698..2700,2719..2721, 2809..2811,2815..2817,2821..2823,2842..2844) /gene="Actn" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 2875..3075 /gene="Actn" /note="Ca2+ insensitive EF hand; Region: EFhand_Ca_insen; pfam08726" /db_xref="CDD:430177" polyA_site 3899 /gene="Actn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtctctttgt gatgatggac tcaattacta caattacaat agcgattgca acaaattaaa 61 tcagcgtcgt gcgtccgtgt ccgtaaacgt gtgtgtgtgt gtgcccgcga gcactgatag 121 ccgatagcca aacaaaaagg taaataaaca accgtgagcg ctgagcgtca ccttgcggcg 181 catccaaagc cactggctgc aacagcagca actggatcac cagcaacaac agcagcacca 241 ccaccagaag cagcgagagc gagagagagt gcagcgggac agggaacgag ctagatatat 301 acaacgagcg agcgggactt ctgagagcgc cacaagatga tgatggagaa cggactctcc 361 atggagtacg gagatgggta catggagcag gaggaggagt gggagcgcga gggccttctc 421 gaccctgcgt gggagaagca acagaagaag acatttaccg cctggtgtaa cagtcatctg 481 cgcaaagccg gcaccgccat cgacaacatc gaggaggact tccgcaacgg cctcaagctg 541 atgctgctgc tggaggtgat ctccggcgag acgctgccca agcccgatcg cggcaagatg 601 cgcttccaca agatcgccaa cgtgaacaag gctctcgact tcatcgcctc caagggcgtc 661 cacctggtgt ccattggcgc cgaggagatc gtcgatggca acctgaagat gaccctgggc 721 atgatctgga cgatcatcct gcgcttcgcc atccaggaca tctccgtgga ggagatgacc 781 gccaaggagg gtctgctgct gtggtgccag cgcaagacgg ctccttacaa gaacgtcaac 841 gtacagaact tccatctgtc gttcaaggat ggtctggcct tctgcgccct catccatcgc 901 catcgtccag atcttatcga ctacgccaag ctgtccaaag acaatcctct ggagaatctt 961 aacactgcct tcgatgtggc cgagaagtat ctggatattc cgcgcatgtt ggatccagat 1021 gatttgatca acactccgaa accggatgaa cgtgccatca tgacgtacgt ctcctgctac 1081 taccacgcct tccagggagc ccaacaggtt ggaaatgtga cgcatgtacc cgaacccaca 1141 agacaataca cctacgtccc gaataattac aatgcggaaa ccgctgccaa ccgcatctgc 1201 aaggtgctca aggtcaacca ggagaacgag cgcctcatgg aggagtacga gcgtctggcc 1261 agtgatttgc tggagtggat ccgccgcacc atgccgtggc tgaactcccg ccaggcggac 1321 aactcgctgg cgggcgtgca gaagaagctg gaggagtacc gcacctaccg gcgcaagcac 1381 aagccgccac gcgtcgagca gaaggccaag ctggagacga acttcaacac gctgcagacc 1441 aagctgcgcc tgtccaaccg gcccgcctac ctgcccaccg agggcaagac cgtctcggac 1501 atctccaact cgtggaaggg cctcgagctg gccgagaagg ccttcgagga gtggctgctc 1561 gccgagacca tgcgcctgga gcgcctcgag catctggccc agaagttcaa gcacaaggcc 1621 gatgcccacg aggactggac gcgcggcaag gaggagatgc tgcagtcgca ggacttccgc 1681 cagtgcaagc tcaacgagct gaaggccctc aagaagaagc acgaagcctt tgagtctgac 1741 ctggccgccc accaggatcg cgtcgagcag atcgccgcca tcgcccagga gctgaacacc 1801 ctggagtacc atgactgcgt gtcggtgaac gccaggtgcc agcgcatctg cgaccagtgg 1861 gaccgcctgg gcgccctcac ccagcgcagg cgcaccgctt tggacgaggc cgagcgcatt 1921 ctggagaaga tcgacatctt gcatttggag ttcgcgaagc gggcggcgcc gttcaacaac 1981 tggctggacg ggacgcgcga ggatctggtc gacatgttca tcgtgcacac catggaggag 2041 atccagggcc tgatccaggc gcacgaccag ttcaaggcga cgctgggcga ggccgacaag 2101 gagttcaacc tgatcgtgaa cctggtccgc gaggtggagt cgattgtgaa gcagcaccag 2161 atccccggcg gcctggagaa cccctacacc acgctgaccg ccaacgatat gacgcgcaag 2221 tggagcgacg tccgccagct ggtccctcag cgcgaccaga cgctggccaa cgagctgcgc 2281 aagcagcaga acaacgagat gctgcgccgc cagttcgccg agaaggccaa cattgtcggc 2341 ccctggatcg agcggcagat ggacgcggtg acggccatcg gcatgggact gcagggatcg 2401 ctggaggacc agctgcaccg gctcaaggag tacgagcagg ccgtctatgc ctacaagccg 2461 aacatcgagg agctggagaa gatccaccag gcggtgcagg agtcgatgat cttcgagaac 2521 cgttacacca actacacgat ggagacgctg cgcgtcggct gggagcagct gctcacctcg 2581 atcaaccgca acatcaacga ggtggagaac cagatcctca cccgcgactc caagggcatt 2641 agccaggagc agctgaacga gttccgcagc agcttcaatc acttcgacaa gaaccgcacc 2701 ggccgcctgt cgcccgagga gttcaagtcg tgcctcgtct cgctgggcta ctcgatcggc 2761 aaggatcgcc agggcgacct cgacttccag cgcatcctcg cggtcgtcga tccgaacaac 2821 actggctacg tgcacttcga cgccttcctc gacttcatga cccgcgagag caccgatacc 2881 gacactgccg aacaagtgat cgactcgttc cgaatcctgg cagccgataa gccatacatt 2941 ttgcccgacg aactgcgccg cgagttgccc ccagaccagg ccgagtactg catccagcgc 3001 atgccgccct acaagggacc caacggagtg cccggcgccc tggactacat gtccttcagc 3061 acagctctct acggcgagac cgacttgtag gagcacctgg gcctgggcat cgaggcacca 3121 cccggatccg agcagagcca gatcatataa taatgataac ctttaataat aataatatta 3181 ataaacatag atttattata cctacactcg taacggtagc tgcagaagaa cttcagagca 3241 tcatgtgagg atgaatatat ttattaattt ccgtctcgag ccgatgtatg cgacccacac 3301 atacaacata caacaaaaaa caaaagtgaa aaacaagaaa ttatgaaatg aaacacacac 3361 gtacatcaaa tacatttgta aaacagcaag gcaaccatca agtgcatatc gaatatttaa 3421 atctaattct aaacaccaag tccaaaacaa aacaaacaaa caaaaacatc aacaaaacgc 3481 taaaaacatt attttttgaa atttatgtta ataaaaacaa aatccataca taaaaaccaa 3541 aaacaaatga aatcgccaaa tccgaaagag attactttct ttgaaataaa aacataaata 3601 ctgaggggga gggagatagc caaacaaagt ggcgaaactt gagactactt ccgcttccgt 3661 ttacgaacct tcaagaacca gatagacaga gacggcaata ctgctagaga cagagagaga 3721 tagagagaga ccactacacg aaagaaagag ttctgttcta tattcacaca attactatag 3781 ctatttattc atcgacaatt tcagaacatt agctttcgct tatctcgaat atattcacat 3841 tttcagaaca ttttacacaa ctcagataac gaatgatgaa taaagcgatt tcttggtga