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LOCUS XM_070218322 4648 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X9, mRNA. ACCESSION XM_070218322 VERSION XM_070218322.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4648 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4648 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056726" CDS 510..3392 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X4" /protein_id="XP_070074423.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKIVPNLVRILKNLILGGYSPEHDVSGVSDPFLQVK ILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIRSEGGLR VLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPDVSIRRR AMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTRWHLDTQ LSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQPLLQVA VWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVSLAKLST RLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAMQISRIS SQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGSTDLSAG GAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTTTTTAGA PTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNGNDLASM LGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALDRDGLLV QLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPPGGVITQ EMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 672..2324 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 3051..3362 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4648 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctctcgctcg cacccactac tactgttgcg ctcctcatca acatattctc gacgaaacat 61 ttttttttac ttgttacgtt gattttgtgg cgtttaaaat tgcgaataac cagcgcaaag 121 ttggccgtgc gaacatgtgc taaagcgtaa atagagtggc cgagtaggaa ttaaccaact 181 tgcagaaaca ttccagccaa aaggcagagc tttgcaaatc gagagcaagt gagagcgaga 241 gagagtgcaa caaaatagcg gccggctgtc agtccgtgtg tgtgtgggat tgagtgtgtg 301 tgcgtggaag atctgcggag gaaaaaccgt tggtttcgct aatttgtgtt gttgcatcgc 361 cgcccagcaa caaaaagaaa acacagcgcg taggccggca aaaaagagga aaaagcataa 421 aaatatttag cagaaaagag agaggcgagt aaagagcgga aaaaggctgc cacacaaaca 481 caagtgattc aacgtttctc gccgccacaa tgaactccga gcatggattc aatccagcct 541 tcaatatggc caccatacgg caggcgttca cagaggcggt ggagagagtc agaatgccta 601 cgcccacacg cctgcgcgac ctcatccgac agattcgcgc cgccagaacc gccgccgagg 661 agcgggcggt ggtcaacaaa gagtgcgcct acatacggag cactttccgc gaggaggact 721 ccgtctggcg ctgtcgcaac attgccaagc tgctgtacat acacatgctc ggctatccgg 781 ctcactttgg ccaactggag tgccttaagc tgacggccag cacgcggttc acagacaagc 841 ggatcggata cctgggcgcc atgctgctgc tggatgagcg gcaggatgtc cacctgctca 901 tcaccaactg cttgaagaac gacttgaaca gctcgacgca gttcgtcgtg ggcctggccc 961 tgtgcactct gggcgcgatc gcctcaccgg aaatggcccg ggatctggcc agcgaggtgg 1021 agcgtctgat gaagtccccg aacacgtaca tccgcaagaa ggcgacgctg tgcgcctttc 1081 gcgtcatccg ccgtgtgccc gagctgatgg agatcttctt gccggccacg cgttccctgc 1141 tcagcgagaa gaatcatggc attttgatca ctggcgttac gctcatcacg gagatgtgcg 1201 agaacagctc ggacacgctg atgcatttca agaagattgt gccgaatctg gtgcgcatcc 1261 tgaagaacct gatcctgggc ggctattcgc cggagcacga cgtcagcggg gtgagcgatc 1321 ccttcctgca ggtgaagatc ctgcggctgc tgcgcattct gggccacaac gatccggacg 1381 cctcggaagc gatgaacgac atcctggccc aggtggccac caacacggag acgagcaaga 1441 atgtgggcaa cacgattctc tacgagacgg tgctttctat tatggatata cgctcggagg 1501 gtggactgcg cgtgctggcc gtcaatatcc tgggacgatt cctgctcaac tcggacaaga 1561 acatacggta tgtggcgctg aacacgctgc tgcgaaccgt ccacgcggac acgtcggcgg 1621 tgcagcggca tcgcaccacc attctggagt gcctcaagga tcccgatgtc tccatacgcc 1681 ggcgtgccat ggagctctcg ttcgcgctga tcaatgcaca aaacatacgt acaatgacca 1741 aggagctgct gctcttcctc gagaaggccg acgcggagtt caaggcgcag tgcagctcgg 1801 gcatgatcct ggccgccgaa cgctattcgc ccaccactcg ctggcatttg gatacgcagt 1861 tgagcgtcct tattgcggcc gggaattatg tgcgcgacga cgtcgtctcc tccaccatcc 1921 agctggtgtc cagcagtccc ctcccggagc agacgtacat cacgaaccgt ttctgggagt 1981 cgctgcaggt ggccaatcat tgcgaggaca agcagccgct cctccaggtc gccgtctggg 2041 ccataggcga gtacggcgat ctctttatgt acggcgccaa cgaggatgag tttgaacggc 2101 ccactgagag cgatctgatc gctgtgtatc ataagttttt aacctctgct caagtctcga 2161 ccacaagcaa gcaatatgct ctggtctccc tagccaagct aagcacacgt ctgcagcagt 2221 gcgtagagga aatccaggcg ctgatcacct cctttggcag ccatctgaat gtcgatctgc 2281 agcagcgggg cgtggagttc acgcagctat tcggtcacta caagcatctg cgtccgccgc 2341 ttctcgagaa gatgccggcc atgcagatca gcaggataag ctcgcagaac ggcgagagcg 2401 gcggcggctc cttcgacgac aacagtccgg atgtcattga aaatggtgaa agtggcggtg 2461 gcggacactc actaatcgaa agcaatatga acactctggg cgacaatacg aacattctgc 2521 tggatctgct gggcagcacg gatctgtcgg cgggcggcgc tggcgatttg gtggcagcca 2581 cggatctctc gaatgccgtg cataaaaaga actcgcgcaa tgccaacgat gtggtggtgg 2641 cgcccgtttc caacaatcag gatctgttgg atctgctcga cttggatctg accacgccct 2701 cgtccacgac gacgacgacg gctggtgcgc caacgggcgt gggaggagga ggaggcggca 2761 ttctggcctt ggccggtgat aataatcaga gcagtgcagc gaacatgaat aacatgctgg 2821 gtggcctgga cctgggtggc tttggatccg gtctggatgg ctcggcgagc atagccacga 2881 acggcaacga tttggccagc atgctgggcg gattgggcgg agctgctcca cccttggcgg 2941 ctccagctgc tcccgtgggc aacctcatcg tcgatggcca tggcggcagc ttgctgggcg 3001 atttgaatcc caacaatgta gaagtgcctc cacagggtcc caggctgact gcgctggaca 3061 gggatggatt gctggtgcaa ctagtttcgg tcaggggcag cgactgcatg cgcatctata 3121 tgacgaccac gaatagctca gacaatacgc tggagcagta cttgctaaag gcggcggttc 3181 agaagagttt ccagctgcaa atgctgacgc cctccggttc ggtgctgcct cctggaggag 3241 tgatcacgca ggagatgcgg gtggtggcca cgtcgaatgc gacactgagg atgcggctgc 3301 gcatccagta cgtgctcgat ggccagcagc aggtagagca gacggaggtc agcggattcc 3361 ccgagcaaca gccggcggtg gccgaggagt agagccacgg caactgtatt aaagcaaacc 3421 agattagcct aatatcggaa ataaatcaac acgggcaact tgcgcagcag cagcaacact 3481 aaaaaacaca cacacacact gtggttgtca cacatttatt gtaaaataag ttatcacaca 3541 cagtaaaaca gaacacacgc aatcgcaatc gcagtcgcag tcgcattcgc atctagatca 3601 gagcattttc tcggtggcag agaaatcaag ggatataccc aagcagttaa cttatatatt 3661 ttgtctaatt tatatctcta tacttatatt tacaaaaaca cactacttgt caaatcaaaa 3721 ctctttacgt ttatcttgtt ttattataaa taattttctc attctaaatg gtgtgtaaac 3781 ttttgtgtgt aaaagacaac tttcagtttt aatttaagac aataaaagtc aaatccccag 3841 atatcccccc cattaaagaa tggcaactaa caaagaaaga acagaaatgt attaaaaccg 3901 attgtgaaat tatgtagcaa aagcatttaa aaaagcttag cattttaaag gaatcgaaac 3961 gatggagcga gttgaatgtt tgaggccatt tcgcgcagtt tatttgttat ttctatatgt 4021 aatgagtgtt tgttttctgt tttccctgag tcctgagtcc tattgagtct tactgatcct 4081 gatcctgata ttccttctta tttaccccgc caaacacatt catattatat ataaatatat 4141 acagaacaga cacacacacg accacgcgga tatatattat attatgtatt gttatttcct 4201 gtgcgcacgt acttaaagcg gagatcagca gcaaccagag aaagtctaaa gaataaagag 4261 aaaaacacaa accagatagc actgtggaaa actagataat atctatgata aatgataaat 4321 ataattgtaa cggaggagga cgcagcttag aactatataa actgattagt tgccgtcgcc 4381 gatgatgatc aggatgatca gatgatgatg ataaggggca tcgagaagca aagaaaatcc 4441 attaactatt attattatta ttatgattat aaatgaatta cgcagctgta tgagaatgaa 4501 agagagagag ataagaaaat aataacatta acatattgta caatatatta ttatttttgt 4561 attactatca tttcctttta tatctactta tattccacaa accttttgag ccgaaataaa 4621 caaacgattt cgttttatcg aaggacaa