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LOCUS XM_070218321 4449 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X8, mRNA. ACCESSION XM_070218321 VERSION XM_070218321.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4449 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4449 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056726" CDS 293..3193 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X3" /protein_id="XP_070074422.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSD PFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIR SEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQ PLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVS LAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAM QISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGS TDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTT TTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNG NDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALD RDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPP GGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 455..2125 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2852..3163 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4449 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgccctctcg ctcgcaccca ctactactgt tgcgctcctc atcaacatat tctcgacgaa 61 acattttttt ttacttgtta cgttgatttt gtggcgttta aaattgcgaa taaccagcgc 121 aaagttggcc gtgcgaacat gtgctaaagc caacaaaaag aaaacacagc gcgtaggccg 181 gcaaaaaaga ggaaaaagca taaaaatatt tagcagaaaa gagagaggcg agtaaagagc 241 ggaaaaaggc tgccacacaa acacaagtga ttcaacgttt ctcgccgcca caatgaactc 301 cgagcatgga ttcaatccag ccttcaatat ggccaccata cggcaggcgt tcacagaggc 361 ggtggagaga gtcagaatgc ctacgcccac acgcctgcgc gacctcatcc gacagattcg 421 cgccgccaga accgccgccg aggagcgggc ggtggtcaac aaagagtgcg cctacatacg 481 gagcactttc cgcgaggagg actccgtctg gcgctgtcgc aacattgcca agctgctgta 541 catacacatg ctcggctatc cggctcactt tggccaactg gagtgcctta agctgacggc 601 cagcacgcgg ttcacagaca agcggatcgg atacctgggc gccatgctgc tgctggatga 661 gcggcaggat gtccacctgc tcatcaccaa ctgcttgaag aacgacttga acagctcgac 721 gcagttcgtc gtgggcctgg ccctgtgcac tctgggcgcg atcgcctcac cggaaatggc 781 ccgggatctg gccagcgagg tggagcgtct gatgaagtcc ccgaacacgt acatccgcaa 841 gaaggcgacg ctgtgcgcct ttcgcgtcat ccgccgtgtg cccgagctga tggagatctt 901 cttgccggcc acgcgttccc tgctcagcga gaagaatcat ggcattttga tcactggcgt 961 tacgctcatc acggagatgt gcgagaacag ctcggacacg ctgatgcatt tcaagaagga 1021 tagcggaaat cgagagattg tgccgaatct ggtgcgcatc ctgaagaacc tgatcctggg 1081 cggctattcg ccggagcacg acgtcagcgg ggtgagcgat cccttcctgc aggtgaagat 1141 cctgcggctg ctgcgcattc tgggccacaa cgatccggac gcctcggaag cgatgaacga 1201 catcctggcc caggtggcca ccaacacgga gacgagcaag aatgtgggca acacgattct 1261 ctacgagacg gtgctttcta ttatggatat acgctcggag ggtggactgc gcgtgctggc 1321 cgtcaatatc ctgggacgat tcctgctcaa ctcggacaag aacatacggt atgtggcgct 1381 gaacacgctg ctgcgaaccg tccacgcgga cacgtcggcg gtgcagcggc atcgcaccac 1441 cattctggag tgcctcaagg atcccgatgt ctccatacgc cggcgtgcca tggagctctc 1501 gttcgcgctg atcaatgcac aaaacatacg tacaatgacc aaggagctgc tgctcttcct 1561 cgagaaggcc gacgcggagt tcaaggcgca gtgcagctcg ggcatgatcc tggccgccga 1621 acgctattcg cccaccactc gctggcattt ggatacgcag ttgagcgtcc ttattgcggc 1681 cgggaattat gtgcgcgacg acgtcgtctc ctccaccatc cagctggtgt ccagcagtcc 1741 cctcccggag cagacgtaca tcacgaaccg tttctgggag tcgctgcagg tggccaatca 1801 ttgcgaggac aagcagccgc tcctccaggt cgccgtctgg gccataggcg agtacggcga 1861 tctctttatg tacggcgcca acgaggatga gtttgaacgg cccactgaga gcgatctgat 1921 cgctgtgtat cataagtttt taacctctgc tcaagtctcg accacaagca agcaatatgc 1981 tctggtctcc ctagccaagc taagcacacg tctgcagcag tgcgtagagg aaatccaggc 2041 gctgatcacc tcctttggca gccatctgaa tgtcgatctg cagcagcggg gcgtggagtt 2101 cacgcagcta ttcggtcact acaagcatct gcgtccgccg cttctcgaga agatgccggc 2161 catgcagatc agcaggataa gctcgcagaa cggcgagagc ggcggcggct ccttcgacga 2221 caacagtccg gatgtcattg aaaatggtga aagtggcggt ggcggacact cactaatcga 2281 aagcaatatg aacactctgg gcgacaatac gaacattctg ctggatctgc tgggcagcac 2341 ggatctgtcg gcgggcggcg ctggcgattt ggtggcagcc acggatctct cgaatgccgt 2401 gcataaaaag aactcgcgca atgccaacga tgtggtggtg gcgcccgttt ccaacaatca 2461 ggatctgttg gatctgctcg acttggatct gaccacgccc tcgtccacga cgacgacgac 2521 ggctggtgcg ccaacgggcg tgggaggagg aggaggcggc attctggcct tggccggtga 2581 taataatcag agcagtgcag cgaacatgaa taacatgctg ggtggcctgg acctgggtgg 2641 ctttggatcc ggtctggatg gctcggcgag catagccacg aacggcaacg atttggccag 2701 catgctgggc ggattgggcg gagctgctcc acccttggcg gctccagctg ctcccgtggg 2761 caacctcatc gtcgatggcc atggcggcag cttgctgggc gatttgaatc ccaacaatgt 2821 agaagtgcct ccacagggtc ccaggctgac tgcgctggac agggatggat tgctggtgca 2881 actagtttcg gtcaggggca gcgactgcat gcgcatctat atgacgacca cgaatagctc 2941 agacaatacg ctggagcagt acttgctaaa ggcggcggtt cagaagagtt tccagctgca 3001 aatgctgacg ccctccggtt cggtgctgcc tcctggagga gtgatcacgc aggagatgcg 3061 ggtggtggcc acgtcgaatg cgacactgag gatgcggctg cgcatccagt acgtgctcga 3121 tggccagcag caggtagagc agacggaggt cagcggattc cccgagcaac agccggcggt 3181 ggccgaggag tagagccacg gcaactgtat taaagcaaac cagattagcc taatatcgga 3241 aataaatcaa cacgggcaac ttgcgcagca gcagcaacac taaaaaacac acacacacac 3301 tgtggttgtc acacatttat tgtaaaataa gttatcacac acagtaaaac agaacacacg 3361 caatcgcaat cgcagtcgca gtcgcattcg catctagatc agagcatttt ctcggtggca 3421 gagaaatcaa gggatatacc caagcagtta acttatatat tttgtctaat ttatatctct 3481 atacttatat ttacaaaaac acactacttg tcaaatcaaa actctttacg tttatcttgt 3541 tttattataa ataattttct cattctaaat ggtgtgtaaa cttttgtgtg taaaagacaa 3601 ctttcagttt taatttaaga caataaaagt caaatcccca gatatccccc ccattaaaga 3661 atggcaacta acaaagaaag aacagaaatg tattaaaacc gattgtgaaa ttatgtagca 3721 aaagcattta aaaaagctta gcattttaaa ggaatcgaaa cgatggagcg agttgaatgt 3781 ttgaggccat ttcgcgcagt ttatttgtta tttctatatg taatgagtgt ttgttttctg 3841 ttttccctga gtcctgagtc ctattgagtc ttactgatcc tgatcctgat attccttctt 3901 atttaccccg ccaaacacat tcatattata tataaatata tacagaacag acacacacac 3961 gaccacgcgg atatatatta tattatgtat tgttatttcc tgtgcgcacg tacttaaagc 4021 ggagatcagc agcaaccaga gaaagtctaa agaataaaga gaaaaacaca aaccagatag 4081 cactgtggaa aactagataa tatctatgat aaatgataaa tataattgta acggaggagg 4141 acgcagctta gaactatata aactgattag ttgccgtcgc cgatgatgat caggatgatc 4201 agatgatgat gataaggggc atcgagaagc aaagaaaatc cattaactat tattattatt 4261 attatgatta taaatgaatt acgcagctgt atgagaatga aagagagaga gataagaaaa 4321 taataacatt aacatattgt acaatatatt attatttttg tattactatc atttcctttt 4381 atatctactt atattccaca aaccttttga gccgaaataa acaaacgatt tcgttttatc 4441 gaaggacaa