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LOCUS XM_070218320 4462 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X7, mRNA. ACCESSION XM_070218320 VERSION XM_070218320.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4462 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4462 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056726" CDS 306..3206 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X3" /protein_id="XP_070074421.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSD PFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIR SEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQ PLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVS LAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAM QISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGS TDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTT TTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNG NDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALD RDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPP GGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 468..2138 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2865..3176 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4462 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctctcgctcg cacccactac tactgttgcg ctcctcatca acatattctc gacgaaacat 61 ttttttttac ttgttacgtt gattttgtgg cgtttaaaat tgcgaataac cagcgcaaag 121 ttggccgtgc gaacatgtgc taaagcgtaa atagagtggc cgacaacaaa aagaaaacac 181 agcgcgtagg ccggcaaaaa agaggaaaaa gcataaaaat atttagcaga aaagagagag 241 gcgagtaaag agcggaaaaa ggctgccaca caaacacaag tgattcaacg tttctcgccg 301 ccacaatgaa ctccgagcat ggattcaatc cagccttcaa tatggccacc atacggcagg 361 cgttcacaga ggcggtggag agagtcagaa tgcctacgcc cacacgcctg cgcgacctca 421 tccgacagat tcgcgccgcc agaaccgccg ccgaggagcg ggcggtggtc aacaaagagt 481 gcgcctacat acggagcact ttccgcgagg aggactccgt ctggcgctgt cgcaacattg 541 ccaagctgct gtacatacac atgctcggct atccggctca ctttggccaa ctggagtgcc 601 ttaagctgac ggccagcacg cggttcacag acaagcggat cggatacctg ggcgccatgc 661 tgctgctgga tgagcggcag gatgtccacc tgctcatcac caactgcttg aagaacgact 721 tgaacagctc gacgcagttc gtcgtgggcc tggccctgtg cactctgggc gcgatcgcct 781 caccggaaat ggcccgggat ctggccagcg aggtggagcg tctgatgaag tccccgaaca 841 cgtacatccg caagaaggcg acgctgtgcg cctttcgcgt catccgccgt gtgcccgagc 901 tgatggagat cttcttgccg gccacgcgtt ccctgctcag cgagaagaat catggcattt 961 tgatcactgg cgttacgctc atcacggaga tgtgcgagaa cagctcggac acgctgatgc 1021 atttcaagaa ggatagcgga aatcgagaga ttgtgccgaa tctggtgcgc atcctgaaga 1081 acctgatcct gggcggctat tcgccggagc acgacgtcag cggggtgagc gatcccttcc 1141 tgcaggtgaa gatcctgcgg ctgctgcgca ttctgggcca caacgatccg gacgcctcgg 1201 aagcgatgaa cgacatcctg gcccaggtgg ccaccaacac ggagacgagc aagaatgtgg 1261 gcaacacgat tctctacgag acggtgcttt ctattatgga tatacgctcg gagggtggac 1321 tgcgcgtgct ggccgtcaat atcctgggac gattcctgct caactcggac aagaacatac 1381 ggtatgtggc gctgaacacg ctgctgcgaa ccgtccacgc ggacacgtcg gcggtgcagc 1441 ggcatcgcac caccattctg gagtgcctca aggatcccga tgtctccata cgccggcgtg 1501 ccatggagct ctcgttcgcg ctgatcaatg cacaaaacat acgtacaatg accaaggagc 1561 tgctgctctt cctcgagaag gccgacgcgg agttcaaggc gcagtgcagc tcgggcatga 1621 tcctggccgc cgaacgctat tcgcccacca ctcgctggca tttggatacg cagttgagcg 1681 tccttattgc ggccgggaat tatgtgcgcg acgacgtcgt ctcctccacc atccagctgg 1741 tgtccagcag tcccctcccg gagcagacgt acatcacgaa ccgtttctgg gagtcgctgc 1801 aggtggccaa tcattgcgag gacaagcagc cgctcctcca ggtcgccgtc tgggccatag 1861 gcgagtacgg cgatctcttt atgtacggcg ccaacgagga tgagtttgaa cggcccactg 1921 agagcgatct gatcgctgtg tatcataagt ttttaacctc tgctcaagtc tcgaccacaa 1981 gcaagcaata tgctctggtc tccctagcca agctaagcac acgtctgcag cagtgcgtag 2041 aggaaatcca ggcgctgatc acctcctttg gcagccatct gaatgtcgat ctgcagcagc 2101 ggggcgtgga gttcacgcag ctattcggtc actacaagca tctgcgtccg ccgcttctcg 2161 agaagatgcc ggccatgcag atcagcagga taagctcgca gaacggcgag agcggcggcg 2221 gctccttcga cgacaacagt ccggatgtca ttgaaaatgg tgaaagtggc ggtggcggac 2281 actcactaat cgaaagcaat atgaacactc tgggcgacaa tacgaacatt ctgctggatc 2341 tgctgggcag cacggatctg tcggcgggcg gcgctggcga tttggtggca gccacggatc 2401 tctcgaatgc cgtgcataaa aagaactcgc gcaatgccaa cgatgtggtg gtggcgcccg 2461 tttccaacaa tcaggatctg ttggatctgc tcgacttgga tctgaccacg ccctcgtcca 2521 cgacgacgac gacggctggt gcgccaacgg gcgtgggagg aggaggaggc ggcattctgg 2581 ccttggccgg tgataataat cagagcagtg cagcgaacat gaataacatg ctgggtggcc 2641 tggacctggg tggctttgga tccggtctgg atggctcggc gagcatagcc acgaacggca 2701 acgatttggc cagcatgctg ggcggattgg gcggagctgc tccacccttg gcggctccag 2761 ctgctcccgt gggcaacctc atcgtcgatg gccatggcgg cagcttgctg ggcgatttga 2821 atcccaacaa tgtagaagtg cctccacagg gtcccaggct gactgcgctg gacagggatg 2881 gattgctggt gcaactagtt tcggtcaggg gcagcgactg catgcgcatc tatatgacga 2941 ccacgaatag ctcagacaat acgctggagc agtacttgct aaaggcggcg gttcagaaga 3001 gtttccagct gcaaatgctg acgccctccg gttcggtgct gcctcctgga ggagtgatca 3061 cgcaggagat gcgggtggtg gccacgtcga atgcgacact gaggatgcgg ctgcgcatcc 3121 agtacgtgct cgatggccag cagcaggtag agcagacgga ggtcagcgga ttccccgagc 3181 aacagccggc ggtggccgag gagtagagcc acggcaactg tattaaagca aaccagatta 3241 gcctaatatc ggaaataaat caacacgggc aacttgcgca gcagcagcaa cactaaaaaa 3301 cacacacaca cactgtggtt gtcacacatt tattgtaaaa taagttatca cacacagtaa 3361 aacagaacac acgcaatcgc aatcgcagtc gcagtcgcat tcgcatctag atcagagcat 3421 tttctcggtg gcagagaaat caagggatat acccaagcag ttaacttata tattttgtct 3481 aatttatatc tctatactta tatttacaaa aacacactac ttgtcaaatc aaaactcttt 3541 acgtttatct tgttttatta taaataattt tctcattcta aatggtgtgt aaacttttgt 3601 gtgtaaaaga caactttcag ttttaattta agacaataaa agtcaaatcc ccagatatcc 3661 cccccattaa agaatggcaa ctaacaaaga aagaacagaa atgtattaaa accgattgtg 3721 aaattatgta gcaaaagcat ttaaaaaagc ttagcatttt aaaggaatcg aaacgatgga 3781 gcgagttgaa tgtttgaggc catttcgcgc agtttatttg ttatttctat atgtaatgag 3841 tgtttgtttt ctgttttccc tgagtcctga gtcctattga gtcttactga tcctgatcct 3901 gatattcctt cttatttacc ccgccaaaca cattcatatt atatataaat atatacagaa 3961 cagacacaca cacgaccacg cggatatata ttatattatg tattgttatt tcctgtgcgc 4021 acgtacttaa agcggagatc agcagcaacc agagaaagtc taaagaataa agagaaaaac 4081 acaaaccaga tagcactgtg gaaaactaga taatatctat gataaatgat aaatataatt 4141 gtaacggagg aggacgcagc ttagaactat ataaactgat tagttgccgt cgccgatgat 4201 gatcaggatg atcagatgat gatgataagg ggcatcgaga agcaaagaaa atccattaac 4261 tattattatt attattatga ttataaatga attacgcagc tgtatgagaa tgaaagagag 4321 agagataaga aaataataac attaacatat tgtacaatat attattattt ttgtattact 4381 atcatttcct tttatatcta cttatattcc acaaaccttt tgagccgaaa taaacaaacg 4441 atttcgtttt atcgaaggac aa