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LOCUS XM_070218319 4509 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X6, mRNA. ACCESSION XM_070218319 VERSION XM_070218319.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4509 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4509 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056726" CDS 353..3253 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X3" /protein_id="XP_070074420.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSD PFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIR SEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQ PLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVS LAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAM QISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGS TDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTT TTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNG NDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALD RDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPP GGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 515..2185 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2912..3223 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4509 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctctcgctc gcacccacta ctactgttgc gctcctcatc aacatattct cgacgaaaca 61 ttttttttta cttgttacgt tgattttgtg gcgtttaaaa ttgcgaataa ccagcgcaaa 121 gttggccgtg cgaacatgtg ctaaagcgta aatagagtgg ccgagtagga attaaccaac 181 ttgcagaaac attccagcca aaaggcagag caacaaaaag aaaacacagc gcgtaggccg 241 gcaaaaaaga ggaaaaagca taaaaatatt tagcagaaaa gagagaggcg agtaaagagc 301 ggaaaaaggc tgccacacaa acacaagtga ttcaacgttt ctcgccgcca caatgaactc 361 cgagcatgga ttcaatccag ccttcaatat ggccaccata cggcaggcgt tcacagaggc 421 ggtggagaga gtcagaatgc ctacgcccac acgcctgcgc gacctcatcc gacagattcg 481 cgccgccaga accgccgccg aggagcgggc ggtggtcaac aaagagtgcg cctacatacg 541 gagcactttc cgcgaggagg actccgtctg gcgctgtcgc aacattgcca agctgctgta 601 catacacatg ctcggctatc cggctcactt tggccaactg gagtgcctta agctgacggc 661 cagcacgcgg ttcacagaca agcggatcgg atacctgggc gccatgctgc tgctggatga 721 gcggcaggat gtccacctgc tcatcaccaa ctgcttgaag aacgacttga acagctcgac 781 gcagttcgtc gtgggcctgg ccctgtgcac tctgggcgcg atcgcctcac cggaaatggc 841 ccgggatctg gccagcgagg tggagcgtct gatgaagtcc ccgaacacgt acatccgcaa 901 gaaggcgacg ctgtgcgcct ttcgcgtcat ccgccgtgtg cccgagctga tggagatctt 961 cttgccggcc acgcgttccc tgctcagcga gaagaatcat ggcattttga tcactggcgt 1021 tacgctcatc acggagatgt gcgagaacag ctcggacacg ctgatgcatt tcaagaagga 1081 tagcggaaat cgagagattg tgccgaatct ggtgcgcatc ctgaagaacc tgatcctggg 1141 cggctattcg ccggagcacg acgtcagcgg ggtgagcgat cccttcctgc aggtgaagat 1201 cctgcggctg ctgcgcattc tgggccacaa cgatccggac gcctcggaag cgatgaacga 1261 catcctggcc caggtggcca ccaacacgga gacgagcaag aatgtgggca acacgattct 1321 ctacgagacg gtgctttcta ttatggatat acgctcggag ggtggactgc gcgtgctggc 1381 cgtcaatatc ctgggacgat tcctgctcaa ctcggacaag aacatacggt atgtggcgct 1441 gaacacgctg ctgcgaaccg tccacgcgga cacgtcggcg gtgcagcggc atcgcaccac 1501 cattctggag tgcctcaagg atcccgatgt ctccatacgc cggcgtgcca tggagctctc 1561 gttcgcgctg atcaatgcac aaaacatacg tacaatgacc aaggagctgc tgctcttcct 1621 cgagaaggcc gacgcggagt tcaaggcgca gtgcagctcg ggcatgatcc tggccgccga 1681 acgctattcg cccaccactc gctggcattt ggatacgcag ttgagcgtcc ttattgcggc 1741 cgggaattat gtgcgcgacg acgtcgtctc ctccaccatc cagctggtgt ccagcagtcc 1801 cctcccggag cagacgtaca tcacgaaccg tttctgggag tcgctgcagg tggccaatca 1861 ttgcgaggac aagcagccgc tcctccaggt cgccgtctgg gccataggcg agtacggcga 1921 tctctttatg tacggcgcca acgaggatga gtttgaacgg cccactgaga gcgatctgat 1981 cgctgtgtat cataagtttt taacctctgc tcaagtctcg accacaagca agcaatatgc 2041 tctggtctcc ctagccaagc taagcacacg tctgcagcag tgcgtagagg aaatccaggc 2101 gctgatcacc tcctttggca gccatctgaa tgtcgatctg cagcagcggg gcgtggagtt 2161 cacgcagcta ttcggtcact acaagcatct gcgtccgccg cttctcgaga agatgccggc 2221 catgcagatc agcaggataa gctcgcagaa cggcgagagc ggcggcggct ccttcgacga 2281 caacagtccg gatgtcattg aaaatggtga aagtggcggt ggcggacact cactaatcga 2341 aagcaatatg aacactctgg gcgacaatac gaacattctg ctggatctgc tgggcagcac 2401 ggatctgtcg gcgggcggcg ctggcgattt ggtggcagcc acggatctct cgaatgccgt 2461 gcataaaaag aactcgcgca atgccaacga tgtggtggtg gcgcccgttt ccaacaatca 2521 ggatctgttg gatctgctcg acttggatct gaccacgccc tcgtccacga cgacgacgac 2581 ggctggtgcg ccaacgggcg tgggaggagg aggaggcggc attctggcct tggccggtga 2641 taataatcag agcagtgcag cgaacatgaa taacatgctg ggtggcctgg acctgggtgg 2701 ctttggatcc ggtctggatg gctcggcgag catagccacg aacggcaacg atttggccag 2761 catgctgggc ggattgggcg gagctgctcc acccttggcg gctccagctg ctcccgtggg 2821 caacctcatc gtcgatggcc atggcggcag cttgctgggc gatttgaatc ccaacaatgt 2881 agaagtgcct ccacagggtc ccaggctgac tgcgctggac agggatggat tgctggtgca 2941 actagtttcg gtcaggggca gcgactgcat gcgcatctat atgacgacca cgaatagctc 3001 agacaatacg ctggagcagt acttgctaaa ggcggcggtt cagaagagtt tccagctgca 3061 aatgctgacg ccctccggtt cggtgctgcc tcctggagga gtgatcacgc aggagatgcg 3121 ggtggtggcc acgtcgaatg cgacactgag gatgcggctg cgcatccagt acgtgctcga 3181 tggccagcag caggtagagc agacggaggt cagcggattc cccgagcaac agccggcggt 3241 ggccgaggag tagagccacg gcaactgtat taaagcaaac cagattagcc taatatcgga 3301 aataaatcaa cacgggcaac ttgcgcagca gcagcaacac taaaaaacac acacacacac 3361 tgtggttgtc acacatttat tgtaaaataa gttatcacac acagtaaaac agaacacacg 3421 caatcgcaat cgcagtcgca gtcgcattcg catctagatc agagcatttt ctcggtggca 3481 gagaaatcaa gggatatacc caagcagtta acttatatat tttgtctaat ttatatctct 3541 atacttatat ttacaaaaac acactacttg tcaaatcaaa actctttacg tttatcttgt 3601 tttattataa ataattttct cattctaaat ggtgtgtaaa cttttgtgtg taaaagacaa 3661 ctttcagttt taatttaaga caataaaagt caaatcccca gatatccccc ccattaaaga 3721 atggcaacta acaaagaaag aacagaaatg tattaaaacc gattgtgaaa ttatgtagca 3781 aaagcattta aaaaagctta gcattttaaa ggaatcgaaa cgatggagcg agttgaatgt 3841 ttgaggccat ttcgcgcagt ttatttgtta tttctatatg taatgagtgt ttgttttctg 3901 ttttccctga gtcctgagtc ctattgagtc ttactgatcc tgatcctgat attccttctt 3961 atttaccccg ccaaacacat tcatattata tataaatata tacagaacag acacacacac 4021 gaccacgcgg atatatatta tattatgtat tgttatttcc tgtgcgcacg tacttaaagc 4081 ggagatcagc agcaaccaga gaaagtctaa agaataaaga gaaaaacaca aaccagatag 4141 cactgtggaa aactagataa tatctatgat aaatgataaa tataattgta acggaggagg 4201 acgcagctta gaactatata aactgattag ttgccgtcgc cgatgatgat caggatgatc 4261 agatgatgat gataaggggc atcgagaagc aaagaaaatc cattaactat tattattatt 4321 attatgatta taaatgaatt acgcagctgt atgagaatga aagagagaga gataagaaaa 4381 taataacatt aacatattgt acaatatatt attatttttg tattactatc atttcctttt 4441 atatctactt atattccaca aaccttttga gccgaaataa acaaacgatt tcgttttatc 4501 gaaggacaa