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LOCUS XM_070218318 4609 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X5, mRNA. ACCESSION XM_070218318 VERSION XM_070218318.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4609 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4609 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056726" CDS 453..3353 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X3" /protein_id="XP_070074419.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSD PFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIR SEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQ PLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVS LAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAM QISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGS TDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTT TTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNG NDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALD RDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPP GGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 615..2285 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 3012..3323 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4609 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agcgccctct cgctcgcacc cactactact gttgcgctcc tcatcaacat attctcgacg 61 aaacattttt ttttacttgt tacgttgatt ttgtggcgtt taaaattgcg aataaccagc 121 gcaaagttgg ccgtgcgaac atgtgctaaa gcctttgcaa atcgagagca agtgagagcg 181 agagagagtg caacaaaata gcggccggct gtcagtccgt gtgtgtgtgg gattgagtgt 241 gtgtgcgtgg aagatctgcg gaggaaaaac cgttggtttc gctaatttgt gttgttgcat 301 cgccgcccag caacaaaaag aaaacacagc gcgtaggccg gcaaaaaaga ggaaaaagca 361 taaaaatatt tagcagaaaa gagagaggcg agtaaagagc ggaaaaaggc tgccacacaa 421 acacaagtga ttcaacgttt ctcgccgcca caatgaactc cgagcatgga ttcaatccag 481 ccttcaatat ggccaccata cggcaggcgt tcacagaggc ggtggagaga gtcagaatgc 541 ctacgcccac acgcctgcgc gacctcatcc gacagattcg cgccgccaga accgccgccg 601 aggagcgggc ggtggtcaac aaagagtgcg cctacatacg gagcactttc cgcgaggagg 661 actccgtctg gcgctgtcgc aacattgcca agctgctgta catacacatg ctcggctatc 721 cggctcactt tggccaactg gagtgcctta agctgacggc cagcacgcgg ttcacagaca 781 agcggatcgg atacctgggc gccatgctgc tgctggatga gcggcaggat gtccacctgc 841 tcatcaccaa ctgcttgaag aacgacttga acagctcgac gcagttcgtc gtgggcctgg 901 ccctgtgcac tctgggcgcg atcgcctcac cggaaatggc ccgggatctg gccagcgagg 961 tggagcgtct gatgaagtcc ccgaacacgt acatccgcaa gaaggcgacg ctgtgcgcct 1021 ttcgcgtcat ccgccgtgtg cccgagctga tggagatctt cttgccggcc acgcgttccc 1081 tgctcagcga gaagaatcat ggcattttga tcactggcgt tacgctcatc acggagatgt 1141 gcgagaacag ctcggacacg ctgatgcatt tcaagaagga tagcggaaat cgagagattg 1201 tgccgaatct ggtgcgcatc ctgaagaacc tgatcctggg cggctattcg ccggagcacg 1261 acgtcagcgg ggtgagcgat cccttcctgc aggtgaagat cctgcggctg ctgcgcattc 1321 tgggccacaa cgatccggac gcctcggaag cgatgaacga catcctggcc caggtggcca 1381 ccaacacgga gacgagcaag aatgtgggca acacgattct ctacgagacg gtgctttcta 1441 ttatggatat acgctcggag ggtggactgc gcgtgctggc cgtcaatatc ctgggacgat 1501 tcctgctcaa ctcggacaag aacatacggt atgtggcgct gaacacgctg ctgcgaaccg 1561 tccacgcgga cacgtcggcg gtgcagcggc atcgcaccac cattctggag tgcctcaagg 1621 atcccgatgt ctccatacgc cggcgtgcca tggagctctc gttcgcgctg atcaatgcac 1681 aaaacatacg tacaatgacc aaggagctgc tgctcttcct cgagaaggcc gacgcggagt 1741 tcaaggcgca gtgcagctcg ggcatgatcc tggccgccga acgctattcg cccaccactc 1801 gctggcattt ggatacgcag ttgagcgtcc ttattgcggc cgggaattat gtgcgcgacg 1861 acgtcgtctc ctccaccatc cagctggtgt ccagcagtcc cctcccggag cagacgtaca 1921 tcacgaaccg tttctgggag tcgctgcagg tggccaatca ttgcgaggac aagcagccgc 1981 tcctccaggt cgccgtctgg gccataggcg agtacggcga tctctttatg tacggcgcca 2041 acgaggatga gtttgaacgg cccactgaga gcgatctgat cgctgtgtat cataagtttt 2101 taacctctgc tcaagtctcg accacaagca agcaatatgc tctggtctcc ctagccaagc 2161 taagcacacg tctgcagcag tgcgtagagg aaatccaggc gctgatcacc tcctttggca 2221 gccatctgaa tgtcgatctg cagcagcggg gcgtggagtt cacgcagcta ttcggtcact 2281 acaagcatct gcgtccgccg cttctcgaga agatgccggc catgcagatc agcaggataa 2341 gctcgcagaa cggcgagagc ggcggcggct ccttcgacga caacagtccg gatgtcattg 2401 aaaatggtga aagtggcggt ggcggacact cactaatcga aagcaatatg aacactctgg 2461 gcgacaatac gaacattctg ctggatctgc tgggcagcac ggatctgtcg gcgggcggcg 2521 ctggcgattt ggtggcagcc acggatctct cgaatgccgt gcataaaaag aactcgcgca 2581 atgccaacga tgtggtggtg gcgcccgttt ccaacaatca ggatctgttg gatctgctcg 2641 acttggatct gaccacgccc tcgtccacga cgacgacgac ggctggtgcg ccaacgggcg 2701 tgggaggagg aggaggcggc attctggcct tggccggtga taataatcag agcagtgcag 2761 cgaacatgaa taacatgctg ggtggcctgg acctgggtgg ctttggatcc ggtctggatg 2821 gctcggcgag catagccacg aacggcaacg atttggccag catgctgggc ggattgggcg 2881 gagctgctcc acccttggcg gctccagctg ctcccgtggg caacctcatc gtcgatggcc 2941 atggcggcag cttgctgggc gatttgaatc ccaacaatgt agaagtgcct ccacagggtc 3001 ccaggctgac tgcgctggac agggatggat tgctggtgca actagtttcg gtcaggggca 3061 gcgactgcat gcgcatctat atgacgacca cgaatagctc agacaatacg ctggagcagt 3121 acttgctaaa ggcggcggtt cagaagagtt tccagctgca aatgctgacg ccctccggtt 3181 cggtgctgcc tcctggagga gtgatcacgc aggagatgcg ggtggtggcc acgtcgaatg 3241 cgacactgag gatgcggctg cgcatccagt acgtgctcga tggccagcag caggtagagc 3301 agacggaggt cagcggattc cccgagcaac agccggcggt ggccgaggag tagagccacg 3361 gcaactgtat taaagcaaac cagattagcc taatatcgga aataaatcaa cacgggcaac 3421 ttgcgcagca gcagcaacac taaaaaacac acacacacac tgtggttgtc acacatttat 3481 tgtaaaataa gttatcacac acagtaaaac agaacacacg caatcgcaat cgcagtcgca 3541 gtcgcattcg catctagatc agagcatttt ctcggtggca gagaaatcaa gggatatacc 3601 caagcagtta acttatatat tttgtctaat ttatatctct atacttatat ttacaaaaac 3661 acactacttg tcaaatcaaa actctttacg tttatcttgt tttattataa ataattttct 3721 cattctaaat ggtgtgtaaa cttttgtgtg taaaagacaa ctttcagttt taatttaaga 3781 caataaaagt caaatcccca gatatccccc ccattaaaga atggcaacta acaaagaaag 3841 aacagaaatg tattaaaacc gattgtgaaa ttatgtagca aaagcattta aaaaagctta 3901 gcattttaaa ggaatcgaaa cgatggagcg agttgaatgt ttgaggccat ttcgcgcagt 3961 ttatttgtta tttctatatg taatgagtgt ttgttttctg ttttccctga gtcctgagtc 4021 ctattgagtc ttactgatcc tgatcctgat attccttctt atttaccccg ccaaacacat 4081 tcatattata tataaatata tacagaacag acacacacac gaccacgcgg atatatatta 4141 tattatgtat tgttatttcc tgtgcgcacg tacttaaagc ggagatcagc agcaaccaga 4201 gaaagtctaa agaataaaga gaaaaacaca aaccagatag cactgtggaa aactagataa 4261 tatctatgat aaatgataaa tataattgta acggaggagg acgcagctta gaactatata 4321 aactgattag ttgccgtcgc cgatgatgat caggatgatc agatgatgat gataaggggc 4381 atcgagaagc aaagaaaatc cattaactat tattattatt attatgatta taaatgaatt 4441 acgcagctgt atgagaatga aagagagaga gataagaaaa taataacatt aacatattgt 4501 acaatatatt attatttttg tattactatc atttcctttt atatctactt atattccaca 4561 aaccttttga gccgaaataa acaaacgatt tcgttttatc gaaggacaa