Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218317 4570 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X4, mRNA. ACCESSION XM_070218317 VERSION XM_070218317.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4570 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4570 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056726" CDS 414..3314 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X3" /protein_id="XP_070074418.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSD PFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIR SEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQ PLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVS LAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAM QISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGS TDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTT TTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNG NDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALD RDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPP GGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 576..2246 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2973..3284 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4570 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgtgcgtgt acttgcgacg acgacgggcc gtatgtgtta aaattaagtt tttttatttt 61 ttgtcgcgtt gtaaactttt tgcatttcga agctgacgcg ttttttctgg cagctttgca 121 aatcgagagc aagtgagagc gagagagagt gcaacaaaat agcggccggc tgtcagtccg 181 tgtgtgtgtg ggattgagtg tgtgtgcgtg gaagatctgc ggaggaaaaa ccgttggttt 241 cgctaatttg tgttgttgca tcgccgccca gcaacaaaaa gaaaacacag cgcgtaggcc 301 ggcaaaaaag aggaaaaagc ataaaaatat ttagcagaaa agagagaggc gagtaaagag 361 cggaaaaagg ctgccacaca aacacaagtg attcaacgtt tctcgccgcc acaatgaact 421 ccgagcatgg attcaatcca gccttcaata tggccaccat acggcaggcg ttcacagagg 481 cggtggagag agtcagaatg cctacgccca cacgcctgcg cgacctcatc cgacagattc 541 gcgccgccag aaccgccgcc gaggagcggg cggtggtcaa caaagagtgc gcctacatac 601 ggagcacttt ccgcgaggag gactccgtct ggcgctgtcg caacattgcc aagctgctgt 661 acatacacat gctcggctat ccggctcact ttggccaact ggagtgcctt aagctgacgg 721 ccagcacgcg gttcacagac aagcggatcg gatacctggg cgccatgctg ctgctggatg 781 agcggcagga tgtccacctg ctcatcacca actgcttgaa gaacgacttg aacagctcga 841 cgcagttcgt cgtgggcctg gccctgtgca ctctgggcgc gatcgcctca ccggaaatgg 901 cccgggatct ggccagcgag gtggagcgtc tgatgaagtc cccgaacacg tacatccgca 961 agaaggcgac gctgtgcgcc tttcgcgtca tccgccgtgt gcccgagctg atggagatct 1021 tcttgccggc cacgcgttcc ctgctcagcg agaagaatca tggcattttg atcactggcg 1081 ttacgctcat cacggagatg tgcgagaaca gctcggacac gctgatgcat ttcaagaagg 1141 atagcggaaa tcgagagatt gtgccgaatc tggtgcgcat cctgaagaac ctgatcctgg 1201 gcggctattc gccggagcac gacgtcagcg gggtgagcga tcccttcctg caggtgaaga 1261 tcctgcggct gctgcgcatt ctgggccaca acgatccgga cgcctcggaa gcgatgaacg 1321 acatcctggc ccaggtggcc accaacacgg agacgagcaa gaatgtgggc aacacgattc 1381 tctacgagac ggtgctttct attatggata tacgctcgga gggtggactg cgcgtgctgg 1441 ccgtcaatat cctgggacga ttcctgctca actcggacaa gaacatacgg tatgtggcgc 1501 tgaacacgct gctgcgaacc gtccacgcgg acacgtcggc ggtgcagcgg catcgcacca 1561 ccattctgga gtgcctcaag gatcccgatg tctccatacg ccggcgtgcc atggagctct 1621 cgttcgcgct gatcaatgca caaaacatac gtacaatgac caaggagctg ctgctcttcc 1681 tcgagaaggc cgacgcggag ttcaaggcgc agtgcagctc gggcatgatc ctggccgccg 1741 aacgctattc gcccaccact cgctggcatt tggatacgca gttgagcgtc cttattgcgg 1801 ccgggaatta tgtgcgcgac gacgtcgtct cctccaccat ccagctggtg tccagcagtc 1861 ccctcccgga gcagacgtac atcacgaacc gtttctggga gtcgctgcag gtggccaatc 1921 attgcgagga caagcagccg ctcctccagg tcgccgtctg ggccataggc gagtacggcg 1981 atctctttat gtacggcgcc aacgaggatg agtttgaacg gcccactgag agcgatctga 2041 tcgctgtgta tcataagttt ttaacctctg ctcaagtctc gaccacaagc aagcaatatg 2101 ctctggtctc cctagccaag ctaagcacac gtctgcagca gtgcgtagag gaaatccagg 2161 cgctgatcac ctcctttggc agccatctga atgtcgatct gcagcagcgg ggcgtggagt 2221 tcacgcagct attcggtcac tacaagcatc tgcgtccgcc gcttctcgag aagatgccgg 2281 ccatgcagat cagcaggata agctcgcaga acggcgagag cggcggcggc tccttcgacg 2341 acaacagtcc ggatgtcatt gaaaatggtg aaagtggcgg tggcggacac tcactaatcg 2401 aaagcaatat gaacactctg ggcgacaata cgaacattct gctggatctg ctgggcagca 2461 cggatctgtc ggcgggcggc gctggcgatt tggtggcagc cacggatctc tcgaatgccg 2521 tgcataaaaa gaactcgcgc aatgccaacg atgtggtggt ggcgcccgtt tccaacaatc 2581 aggatctgtt ggatctgctc gacttggatc tgaccacgcc ctcgtccacg acgacgacga 2641 cggctggtgc gccaacgggc gtgggaggag gaggaggcgg cattctggcc ttggccggtg 2701 ataataatca gagcagtgca gcgaacatga ataacatgct gggtggcctg gacctgggtg 2761 gctttggatc cggtctggat ggctcggcga gcatagccac gaacggcaac gatttggcca 2821 gcatgctggg cggattgggc ggagctgctc cacccttggc ggctccagct gctcccgtgg 2881 gcaacctcat cgtcgatggc catggcggca gcttgctggg cgatttgaat cccaacaatg 2941 tagaagtgcc tccacagggt cccaggctga ctgcgctgga cagggatgga ttgctggtgc 3001 aactagtttc ggtcaggggc agcgactgca tgcgcatcta tatgacgacc acgaatagct 3061 cagacaatac gctggagcag tacttgctaa aggcggcggt tcagaagagt ttccagctgc 3121 aaatgctgac gccctccggt tcggtgctgc ctcctggagg agtgatcacg caggagatgc 3181 gggtggtggc cacgtcgaat gcgacactga ggatgcggct gcgcatccag tacgtgctcg 3241 atggccagca gcaggtagag cagacggagg tcagcggatt ccccgagcaa cagccggcgg 3301 tggccgagga gtagagccac ggcaactgta ttaaagcaaa ccagattagc ctaatatcgg 3361 aaataaatca acacgggcaa cttgcgcagc agcagcaaca ctaaaaaaca cacacacaca 3421 ctgtggttgt cacacattta ttgtaaaata agttatcaca cacagtaaaa cagaacacac 3481 gcaatcgcaa tcgcagtcgc agtcgcattc gcatctagat cagagcattt tctcggtggc 3541 agagaaatca agggatatac ccaagcagtt aacttatata ttttgtctaa tttatatctc 3601 tatacttata tttacaaaaa cacactactt gtcaaatcaa aactctttac gtttatcttg 3661 ttttattata aataattttc tcattctaaa tggtgtgtaa acttttgtgt gtaaaagaca 3721 actttcagtt ttaatttaag acaataaaag tcaaatcccc agatatcccc cccattaaag 3781 aatggcaact aacaaagaaa gaacagaaat gtattaaaac cgattgtgaa attatgtagc 3841 aaaagcattt aaaaaagctt agcattttaa aggaatcgaa acgatggagc gagttgaatg 3901 tttgaggcca tttcgcgcag tttatttgtt atttctatat gtaatgagtg tttgttttct 3961 gttttccctg agtcctgagt cctattgagt cttactgatc ctgatcctga tattccttct 4021 tatttacccc gccaaacaca ttcatattat atataaatat atacagaaca gacacacaca 4081 cgaccacgcg gatatatatt atattatgta ttgttatttc ctgtgcgcac gtacttaaag 4141 cggagatcag cagcaaccag agaaagtcta aagaataaag agaaaaacac aaaccagata 4201 gcactgtgga aaactagata atatctatga taaatgataa atataattgt aacggaggag 4261 gacgcagctt agaactatat aaactgatta gttgccgtcg ccgatgatga tcaggatgat 4321 cagatgatga tgataagggg catcgagaag caaagaaaat ccattaacta ttattattat 4381 tattatgatt ataaatgaat tacgcagctg tatgagaatg aaagagagag agataagaaa 4441 ataataacat taacatattg tacaatatat tattattttt gtattactat catttccttt 4501 tatatctact tatattccac aaaccttttg agccgaaata aacaaacgat ttcgttttat 4561 cgaaggacaa