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LOCUS XM_070218316 4667 bp mRNA linear INV 09-DEC-2024 subunit (AP-1gamma), transcript variant X3, mRNA. ACCESSION XM_070218316 VERSION XM_070218316.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4667 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4667 /gene="AP-1gamma" /note="adaptor protein complex 1, gamma subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056726" CDS 511..3411 /gene="AP-1gamma" /codon_start=1 /product="AP-1 complex subunit gamma-1 isoform X3" /protein_id="XP_070074417.1" /db_xref="GeneID:108056726" /translation="MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRA ARTAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLKLT ASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASP EMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGI LITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSD PFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIMDIR SEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPLPEQTYITNRFWESLQVANHCEDKQ PLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYHKFLTSAQVSTTSKQYALVS LAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAM QISRISSQNGESGGGSFDDNSPDVIENGESGGGGHSLIESNMNTLGDNTNILLDLLGS TDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVVAPVSNNQDLLDLLDLDLTTPSSTT TTTAGAPTGVGGGGGGILALAGDNNQSSAANMNNMLGGLDLGGFGSGLDGSASIATNG NDLASMLGGLGGAAPPLAAPAAPVGNLIVDGHGGSLLGDLNPNNVEVPPQGPRLTALD RDGLLVQLVSVRGSDCMRIYMTTTNSSDNTLEQYLLKAAVQKSFQLQMLTPSGSVLPP GGVITQEMRVVATSNATLRMRLRIQYVLDGQQQVEQTEVSGFPEQQPAVAEE" misc_feature 673..2343 /gene="AP-1gamma" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 3070..3381 /gene="AP-1gamma" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" polyA_site 4667 /gene="AP-1gamma" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctctcgctc gcacccacta ctactgttgc gctcctcatc aacatattct cgacgaaaca 61 ttttttttta cttgttacgt tgattttgtg gcgtttaaaa ttgcgaataa ccagcgcaaa 121 gttggccgtg cgaacatgtg ctaaagcgta aatagagtgg ccgagtagga attaaccaac 181 ttgcagaaac attccagcca aaaggcagag ctttgcaaat cgagagcaag tgagagcgag 241 agagagtgca acaaaatagc ggccggctgt cagtccgtgt gtgtgtggga ttgagtgtgt 301 gtgcgtggaa gatctgcgga ggaaaaaccg ttggtttcgc taatttgtgt tgttgcatcg 361 ccgcccagca acaaaaagaa aacacagcgc gtaggccggc aaaaaagagg aaaaagcata 421 aaaatattta gcagaaaaga gagaggcgag taaagagcgg aaaaaggctg ccacacaaac 481 acaagtgatt caacgtttct cgccgccaca atgaactccg agcatggatt caatccagcc 541 ttcaatatgg ccaccatacg gcaggcgttc acagaggcgg tggagagagt cagaatgcct 601 acgcccacac gcctgcgcga cctcatccga cagattcgcg ccgccagaac cgccgccgag 661 gagcgggcgg tggtcaacaa agagtgcgcc tacatacgga gcactttccg cgaggaggac 721 tccgtctggc gctgtcgcaa cattgccaag ctgctgtaca tacacatgct cggctatccg 781 gctcactttg gccaactgga gtgccttaag ctgacggcca gcacgcggtt cacagacaag 841 cggatcggat acctgggcgc catgctgctg ctggatgagc ggcaggatgt ccacctgctc 901 atcaccaact gcttgaagaa cgacttgaac agctcgacgc agttcgtcgt gggcctggcc 961 ctgtgcactc tgggcgcgat cgcctcaccg gaaatggccc gggatctggc cagcgaggtg 1021 gagcgtctga tgaagtcccc gaacacgtac atccgcaaga aggcgacgct gtgcgccttt 1081 cgcgtcatcc gccgtgtgcc cgagctgatg gagatcttct tgccggccac gcgttccctg 1141 ctcagcgaga agaatcatgg cattttgatc actggcgtta cgctcatcac ggagatgtgc 1201 gagaacagct cggacacgct gatgcatttc aagaaggata gcggaaatcg agagattgtg 1261 ccgaatctgg tgcgcatcct gaagaacctg atcctgggcg gctattcgcc ggagcacgac 1321 gtcagcgggg tgagcgatcc cttcctgcag gtgaagatcc tgcggctgct gcgcattctg 1381 ggccacaacg atccggacgc ctcggaagcg atgaacgaca tcctggccca ggtggccacc 1441 aacacggaga cgagcaagaa tgtgggcaac acgattctct acgagacggt gctttctatt 1501 atggatatac gctcggaggg tggactgcgc gtgctggccg tcaatatcct gggacgattc 1561 ctgctcaact cggacaagaa catacggtat gtggcgctga acacgctgct gcgaaccgtc 1621 cacgcggaca cgtcggcggt gcagcggcat cgcaccacca ttctggagtg cctcaaggat 1681 cccgatgtct ccatacgccg gcgtgccatg gagctctcgt tcgcgctgat caatgcacaa 1741 aacatacgta caatgaccaa ggagctgctg ctcttcctcg agaaggccga cgcggagttc 1801 aaggcgcagt gcagctcggg catgatcctg gccgccgaac gctattcgcc caccactcgc 1861 tggcatttgg atacgcagtt gagcgtcctt attgcggccg ggaattatgt gcgcgacgac 1921 gtcgtctcct ccaccatcca gctggtgtcc agcagtcccc tcccggagca gacgtacatc 1981 acgaaccgtt tctgggagtc gctgcaggtg gccaatcatt gcgaggacaa gcagccgctc 2041 ctccaggtcg ccgtctgggc cataggcgag tacggcgatc tctttatgta cggcgccaac 2101 gaggatgagt ttgaacggcc cactgagagc gatctgatcg ctgtgtatca taagttttta 2161 acctctgctc aagtctcgac cacaagcaag caatatgctc tggtctccct agccaagcta 2221 agcacacgtc tgcagcagtg cgtagaggaa atccaggcgc tgatcacctc ctttggcagc 2281 catctgaatg tcgatctgca gcagcggggc gtggagttca cgcagctatt cggtcactac 2341 aagcatctgc gtccgccgct tctcgagaag atgccggcca tgcagatcag caggataagc 2401 tcgcagaacg gcgagagcgg cggcggctcc ttcgacgaca acagtccgga tgtcattgaa 2461 aatggtgaaa gtggcggtgg cggacactca ctaatcgaaa gcaatatgaa cactctgggc 2521 gacaatacga acattctgct ggatctgctg ggcagcacgg atctgtcggc gggcggcgct 2581 ggcgatttgg tggcagccac ggatctctcg aatgccgtgc ataaaaagaa ctcgcgcaat 2641 gccaacgatg tggtggtggc gcccgtttcc aacaatcagg atctgttgga tctgctcgac 2701 ttggatctga ccacgccctc gtccacgacg acgacgacgg ctggtgcgcc aacgggcgtg 2761 ggaggaggag gaggcggcat tctggccttg gccggtgata ataatcagag cagtgcagcg 2821 aacatgaata acatgctggg tggcctggac ctgggtggct ttggatccgg tctggatggc 2881 tcggcgagca tagccacgaa cggcaacgat ttggccagca tgctgggcgg attgggcgga 2941 gctgctccac ccttggcggc tccagctgct cccgtgggca acctcatcgt cgatggccat 3001 ggcggcagct tgctgggcga tttgaatccc aacaatgtag aagtgcctcc acagggtccc 3061 aggctgactg cgctggacag ggatggattg ctggtgcaac tagtttcggt caggggcagc 3121 gactgcatgc gcatctatat gacgaccacg aatagctcag acaatacgct ggagcagtac 3181 ttgctaaagg cggcggttca gaagagtttc cagctgcaaa tgctgacgcc ctccggttcg 3241 gtgctgcctc ctggaggagt gatcacgcag gagatgcggg tggtggccac gtcgaatgcg 3301 acactgagga tgcggctgcg catccagtac gtgctcgatg gccagcagca ggtagagcag 3361 acggaggtca gcggattccc cgagcaacag ccggcggtgg ccgaggagta gagccacggc 3421 aactgtatta aagcaaacca gattagccta atatcggaaa taaatcaaca cgggcaactt 3481 gcgcagcagc agcaacacta aaaaacacac acacacactg tggttgtcac acatttattg 3541 taaaataagt tatcacacac agtaaaacag aacacacgca atcgcaatcg cagtcgcagt 3601 cgcattcgca tctagatcag agcattttct cggtggcaga gaaatcaagg gatataccca 3661 agcagttaac ttatatattt tgtctaattt atatctctat acttatattt acaaaaacac 3721 actacttgtc aaatcaaaac tctttacgtt tatcttgttt tattataaat aattttctca 3781 ttctaaatgg tgtgtaaact tttgtgtgta aaagacaact ttcagtttta atttaagaca 3841 ataaaagtca aatccccaga tatccccccc attaaagaat ggcaactaac aaagaaagaa 3901 cagaaatgta ttaaaaccga ttgtgaaatt atgtagcaaa agcatttaaa aaagcttagc 3961 attttaaagg aatcgaaacg atggagcgag ttgaatgttt gaggccattt cgcgcagttt 4021 atttgttatt tctatatgta atgagtgttt gttttctgtt ttccctgagt cctgagtcct 4081 attgagtctt actgatcctg atcctgatat tccttcttat ttaccccgcc aaacacattc 4141 atattatata taaatatata cagaacagac acacacacga ccacgcggat atatattata 4201 ttatgtattg ttatttcctg tgcgcacgta cttaaagcgg agatcagcag caaccagaga 4261 aagtctaaag aataaagaga aaaacacaaa ccagatagca ctgtggaaaa ctagataata 4321 tctatgataa atgataaata taattgtaac ggaggaggac gcagcttaga actatataaa 4381 ctgattagtt gccgtcgccg atgatgatca ggatgatcag atgatgatga taaggggcat 4441 cgagaagcaa agaaaatcca ttaactatta ttattattat tatgattata aatgaattac 4501 gcagctgtat gagaatgaaa gagagagaga taagaaaata ataacattaa catattgtac 4561 aatatattat tatttttgta ttactatcat ttccttttat atctacttat attccacaaa 4621 ccttttgagc cgaaataaac aaacgatttc gttttatcga aggacaa