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LOCUS XM_070218311 5669 bp mRNA linear INV 09-DEC-2024 (if), transcript variant X3, mRNA. ACCESSION XM_070218311 VERSION XM_070218311.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5669 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5669 /gene="if" /note="integrin subunit alpha inflated; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056767" CDS 296..4345 /gene="if" /codon_start=1 /product="integrin alpha-PS2 isoform X2" /protein_id="XP_070074412.1" /db_xref="GeneID:108056767" /translation="MSGDQGHRRRMGGPPLIMILILLAIALTTDGYNIDLPSYIRFRQ SPNSMFGFSIAMHKSRNGFYSNQNNVSLIVGAPKFDTSRYQQGVSEAGGVFKCSLNDD DCKLVPFDSKGNNRNVDKEVVDRKSYQWLGATVATSRDSDLVVACAPRYVFHTMTPSK AFRIDPVGTCFTSHNFEQFHEVSPCRTNNWGYHRQGSCQAGFSAAINGNGSRLFIGAP GSWYWQGMASSHDVTRPENQVFSTSESASVNDDSYLGYSMVTGDFDGDRSEDVAIGMP RGGNLVGRIVVNRWNMANIFNITGRQIGEYFGYALATSDVDGDGLDDLIIGAPMYTDP DNVEGKYDVGRVYILLQGGPSEEKRWTTEHIRDGWHSKGRFGLALTTLGDVNGDGYGD FAVGAPYDGPEGRGVVYIFHGSPLGPLAKPSQVIKAEQIVEGAPYPRTFGFALSGGLD MDGNTYPDLAVGAYSSDQVFIFKSRPVAAVNAETSFASNSKLISLDDRSCQLVRDRKK VPCMLLATCWSYTGRYLPQQLDFDVSWLLDAKKLPNPRMFFLRDEGKNIRNQTIRLNY GQKYCLNETVYLLDKVQDKLTPLEVEARYNLRSSRPLDPLVRQRRSILEPVIDQNREI VLRDAINIQKNCGPDNICEPDLKLVVNTVDKYLFGSPEPLVIEVLISNTNEDAFEAAF YMVTPPDLQFRKLQQLGEKKDTPITCSPPTPENNHTLKCDIGNPLESGKIAHFKISLV PEEKYGSSSSYDFYWEANSTNLEKPGSDYDNKIRQSVGIWVDTDLDIKGTSLPDYQLY KADDYKMLGNASKEDEIGPQVVHIYEIRNNRPSIIEEAEVKIHLPYETINGDALMYLL NQPETGGKITCDEVAVNEYNLQLDEKLQRKSYLQAQGAISNSAEAAGQSSSSSSSSSS WTSESGGHVEKAQGNGYVQGVIVSNTTDAGNKLTPKQVQDRLAEDKLESIGDASIVHR DRASQALVQEPRMNQTSYASFSASSSSSGGSPLGHSTQGHIQMARPVVQQQGSSSSSS NYRTWPNQQQQQILLAGSGGLGSPVSFGDKSQFGGRQGNFHAAGFDLGTLNPSQSQSQ GQFQTSSQGHYQGQNQAQFQAPRNPVQTSYQSQTQYSGGAAPGGYQTTHHVTYSSGGK PYYGRENEDYYDEDNLQQAAPNGAQWSSSSSSSSSRRLRRSPQEDQEEQQPRQIDLNS PCKSAKCKTIRCVVTNLGTEDGDAAFVAIRARMVAKTMEKLASNVPLNVSTLAVANVI LLPFIGAPKDAIVKTHEIFYKAEPEPLQVPDVVPLWVVVLAACAGALIFLLLVWLLYK CGFFNRNRPTDHSQERQPLRNGYHGDEHL" misc_feature 431..625 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1043..>1168 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1412..1573 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1616..>1711 /gene="if" /note="Integrin alpha (beta-propellor repeats); Region: Int_alpha; smart00191" /db_xref="CDD:214549" misc_feature 1718..2959 /gene="if" /note="Integrin alpha; Region: Integrin_alpha2; pfam08441" /db_xref="CDD:462478" misc_feature 4253..4297 /gene="if" /note="Integrin alpha cytoplasmic region; Region: Integrin_alpha; pfam00357" /db_xref="CDD:459778" polyA_site 5669 /gene="if" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cactcactgc attcggtcgc gtgaagcggt tcttggctga tgtgaagtgc ggagcgctcg 61 cgatcgaaac ggaaattcga agggcgccag attcgattca aaactataga tagaaaattt 121 cgaaaaaatt caaattcgcg tatgcaaatc caatcgatgc tgtgaagatg caggcgtaaa 181 agtgcaaagt tcttggatgc aaacccaacg aaatcgatta gaaagaaagt agaaattcag 241 aaaaagaaag aactcagcga aaaaaaaaga aaagaaagaa agtctcgata gaaagatgag 301 tggagaccaa ggtcaccgaa gaagaatggg gggtccaccc ctgataatga tcctgatcct 361 gttggcgatc gcactaacca ccgatggcta taacatcgat ctgcccagct acattcgatt 421 ccggcagtcg cccaactcga tgttcggctt tagcattgcg atgcacaagt ctcgaaatgg 481 attctacagc aatcagaaca atgtcagttt gatcgttgga gctcccaaat tcgacacatc 541 ccgttatcag cagggcgtgt cggaggccgg cggtgttttc aaatgcagcc tgaacgatga 601 cgactgcaaa ttggtgccat tcgactccaa aggcaacaat cggaatgtcg acaaggaggt 661 ggtggacagg aaatcctatc aatggttggg cgccacggtg gccacttcgc gagacagtga 721 cttagttgtg gcctgcgcac cgcgctatgt gttccacacg atgacgccat cgaaggcgtt 781 ccgcattgat cccgtgggca cctgcttcac ctcgcacaac ttcgagcagt tccacgaggt 841 ctccccctgc cggaccaaca actggggtta tcatcgccag ggctcgtgtc aggctggatt 901 tagtgcagcg atcaacggga atggatcgcg cttgttcatt ggcgcacctg gcagttggta 961 ctggcaaggt atggccagtt cccacgacgt gacccggccc gagaaccagg tcttctccac 1021 ctccgagagc gcctcggtga atgacgactc ctacttgggc tactcgatgg tcaccggtga 1081 ctttgacggc gatcgcagcg aggatgtggc cattggcatg ccgcgtggcg gcaatctcgt 1141 cggcaggatc gtggtgaatc gttggaacat ggcgaacatc ttcaatatca ccggtcgcca 1201 aataggcgag tactttggct acgcgctggc gacgagcgac gtggatggcg acgggctgga 1261 cgatctgatc atcggggcgc cgatgtacac ggatcccgac aatgtggagg gcaagtacga 1321 cgtgggccgc gtctacatcc tgctgcaggg cggccccagc gaggagaagc gctggacgac 1381 ggagcacatc cgggatggct ggcacagcaa gggaagattc ggcctggccc tgaccaccct 1441 gggcgacgtg aacggcgatg gctacgggga ctttgcagtg ggcgctccct acgacggacc 1501 cgagggtcgc ggcgtggtct acatcttcca tggatcgcca ctcggaccgc tggccaagcc 1561 gtcgcaggtg atcaaggcgg agcagattgt cgagggagcc ccgtatccgc gcacctttgg 1621 cttcgccctg tccggtggcc tcgacatgga cggcaacacc tatccggatc tcgccgtggg 1681 cgcctactcc tccgaccagg tcttcatctt caagtcgcgg cccgtggccg ctgtgaatgc 1741 ggagaccagc ttcgcctcga actccaagct gatcagcctg gacgatcgca gttgccagct 1801 ggtgagggac aggaagaagg tgccctgcat gctgctggcc acctgctgga gctacacggg 1861 ccgctatctg ccccagcagc tggacttcga tgtctcctgg ctgctggacg ccaagaagct 1921 gcccaatccg cgcatgttct tcctgcgcga cgagggcaag aatatcagga accagaccat 1981 tcgcctcaac tatggccaga agtactgtct gaacgagacc gtgtatctgc tggacaaggt 2041 gcaggacaag ctgacgccgc tggaggtgga ggcgcgctac aatctgcgca gcagtcgccc 2101 cctggatcct ttggtccgcc agaggcggag catcctggag ccggtgatcg atcagaatcg 2161 cgagatcgtc ctcagggatg ccatcaacat tcagaagaac tgtggacccg ataacatctg 2221 cgagccggat ctcaagctgg tggtcaacac cgtggacaag tatctgtttg gctcgcccga 2281 gcccctggtc atcgaggtgc tcatctcgaa caccaacgag gatgcctttg aggccgcctt 2341 ctatatggtc accccgccgg atctgcagtt caggaagctg cagcagctgg gcgagaagaa 2401 ggacacgccc atcacctgct cgccgcccac gcccgaaaat aatcacacgc tgaagtgcga 2461 catcggaaat cccctggagt cgggcaagat tgcccacttc aagatcagct tggtgcccga 2521 ggagaagtac ggcagctcgt ccagttacga cttctattgg gaggccaact cgacgaatct 2581 ggagaagccg ggctccgatt acgacaacaa gatccgccag agcgtcggca tctgggtgga 2641 caccgatctg gacatcaagg gcacctcgct gcccgactac cagctgtaca aggccgacga 2701 ctacaagatg ctggggaatg cctccaagga ggacgagatc gggccgcagg tggtgcacat 2761 ctacgagatc cgcaacaatc gcccctcgat catcgaggag gcggaggtga agatccatct 2821 gccctacgag acgatcaacg gcgatgcgct gatgtatctg ctcaatcagc cggagaccgg 2881 tggcaagatc acctgcgacg aggtggccgt caacgagtac aatctgcagc tggacgagaa 2941 gctgcagcgc aagtcgtatc tgcaggcgca gggtgccatt tcgaattccg ccgaggccgc 3001 aggccaatca tcctcctcct cctcgagctc ctccagctgg acctccgagt cgggtggcca 3061 tgtggagaag gcccagggca atggctacgt gcagggcgtt atagttagca acacgacgga 3121 tgcgggcaac aagctgacgc ccaaacaggt ccaggatcgt ttggccgagg ataagctgga 3181 gtcgatcgga gatgcctcca tcgtgcaccg cgatcgcgcc agtcaggctc tcgtccagga 3241 gccccggatg aaccagacca gctatgccag tttctccgcg agcagctcct cgtctggtgg 3301 atctcccttg ggtcacagca cccagggtca catacaaatg gcccggccag tggttcagca 3361 gcagggcagc tcctcctcct cctccaacta ccgcacttgg ccaaaccaac agcagcagca 3421 gatccttctg gctggctccg gaggattggg ttcccccgtt agcttcggcg acaagtcaca 3481 gttcggcggt cggcagggca acttccacgc cgccggcttc gatctgggca ccctgaatcc 3541 tagccagagc cagagccagg gtcagttcca gacgtccagc cagggccact accagggcca 3601 gaatcaggcc cagttccagg cgcccaggaa tcccgtgcag acctcctacc agagccaaac 3661 gcagtacagt ggaggagccg ctcccggcgg ctatcagacc acccaccatg tgacctactc 3721 gtcgggcggc aagccctact atggccgaga gaacgaggac tactacgacg aggacaacct 3781 gcagcaggca gcgcccaatg gagctcaatg gagcagcagc agcagcagca gcagctcgcg 3841 tcgtttgcgg cgatccccgc aggaggatca ggaggagcag cagccgcgcc agatcgattt 3901 gaattcgccc tgcaagtcgg ccaaatgcaa gaccatccgg tgtgtggtca ccaatctggg 3961 caccgaggac ggcgatgccg ccttcgtggc catccgggcg cgcatggtgg ccaaaacgat 4021 ggagaagctg gcctcgaacg taccgctcaa tgtgtccacg ctggcggtgg ccaatgtcat 4081 cctgctgccc ttcatcggag cgcccaagga cgcgattgtg aagacgcacg agatcttcta 4141 caaggcggag ccggagccgc tccaggtgcc cgatgtggtg cccctgtggg tcgtcgtcct 4201 ggccgcctgc gccggagcgc tcatcttcct gctgctcgtc tggctgctct acaagtgcgg 4261 cttctttaat cgcaaccggc cgacggatca ctcgcaggag cggcagccac ttcggaacgg 4321 ataccacggc gacgagcatc tgtagggaca tccgcgaggt cctccaaaat agcaagagaa 4381 ttaacaaaag ccacgaaata cttctaacat cgcactaaac caaaccaaaa tgtactaaaa 4441 acaacgaaca acggctctaa gacgtactaa aatcgagcgc ttagttgagt ttacaaaaaa 4501 atgcgatgtc gacgggattg gaatcccgaa tagatcactt ttgagggata agcctgctgc 4561 ttggaagata cgaaaaaaaa caaaaaaaaa caacatttaa acttgcctag tcacgacatg 4621 aagaactttc taatgcgtaa aggttttata acttttaaca gaacacttta ttttttttat 4681 tttttagact tttgtgtttt tgtttcattg caaaaatttc gaggaaagtt aaataagtgc 4741 tatattaatc tgtactaaag aaagcaagga aggaaagaaa gaaagcaagt cgaagggagc 4801 ctaggctaag tgaatgaatg actgaaaatg aactatatga cgactgaatg aatgagctgg 4861 tgaatgagcg aatgtgagtg atagccaata tggaaatatc gaagttataa gttcgagaat 4921 cgataatcga gaaactgggg atagtgttga gcaaagtgct gccctatata ctgccacgcc 4981 ccaaaaaaaa atttgggcag cagccgaggc atggaaatta atacagagaa aatccacact 5041 tattaggtgc tactctaatc tttttttttt ttaaatctat tatcacgtct cttcggaata 5101 cttggcgttt tcccagcgcg gaaacccaat tctttttctg tggactattg tttggacaaa 5161 ctcaaagttt gcctgttgga ggaaaagtta caacgccaaa atgtgttgaa aaatgcaaaa 5221 gaaattatta aaaacatatt gattaatcta tgtaattctt gaatgtaaac tctgtgtaaa 5281 tactaaaaat gaaaaacaaa aaaaaaaaca aaaaacgaag aagcgaaagt aggagaacag 5341 ttgatttgtt atatttaaat taatattgca tttatttcct aattacagtg ggagaagcgc 5401 tgaccgactt cttgcagtgt actctcgaaa taaacgatcc ctgtctgtat cacttaaaac 5461 cccctactaa aatgtagtct cgcccgctgc tcacagctag tttagttgaa ttatacgcta 5521 ctgattaatt tattaactgt acttattaat gcgtgtcatg aataatgatt gattgccccc 5581 cttatttgtt tgctaatttc tgtattacat ttaatgattt accataaaaa tacaaataaa 5641 aatgacggtc gagttgtaaa aataaaaaa