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LOCUS XM_070218306 6130 bp mRNA linear INV 09-DEC-2024 X1, mRNA. ACCESSION XM_070218306 VERSION XM_070218306.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6130 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6130 /gene="Ulp1" /note="Ulp1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108058181" CDS 159..5780 /gene="Ulp1" /codon_start=1 /product="interaptin isoform X1" /protein_id="XP_070074407.1" /db_xref="GeneID:108058181" /translation="MIQYSFNATYQGRKRRFKYNISEPAAEETRRRMSKSSEEAVVTD SASASTSASASRDGVNGSSVDHQGNSPPFGAPGSQADSGYAGNSSTNQSHYYHHHHFQ GAAAFESPAFLPVSPSRGKFWAPGAVRIPNAEPFFASPKRSCLTPSSLSLSSQHSSPR LEELRSSTPVTSPQRVRGHSVSTWNQTANSDGPQLAPRLHAQTPSAEEFELLSEEQRQ VYQVGEPTSYRQLALREFEEVNERVAEQLLQERQLAAARIQQRNQRIATQIQPEEVRD QKLQVLGEIEQTKELVLQETQPIVARNQDLNEQIVVEIQEIQQIPQEIQQEALVTEIS AIEQREEQVVVVVLQEDQNIATEIQDLNEPTILSQIVQETQLIADKILQEDHNIASQI PQEEIEAATEVSSQFEPAKVQPILSENPDINEQIVVEIQEKQNQEEDQKILQANIPIA TEVSEFIQNIVAQIPQEDIQIATEVLNEFERAEEQEDPKIATVNQDIQEQIVVEIQDE PNVSHVPQESEQIATEILQEDQLIASPTQEENVPTVTEILQEDHGIVAETQDINEQIV IETEDQPIVSQIPLQILSDLEPTEEQVAVQFPQEDQDIATEIQDISERLVVEIQNEPI VPQVAEEKQPSLQETQLIASPIQQEDQEILQADIPIVTEQIQIETEVKVQNHQVLNDL EQAEEQKEPKIVAENQDIHEQTVIEIQDEPIVSHDPQSLIQQEDIPTVTEEDRNIVTE TQDLNEQIVIEIEDEPIVSQLPQENHLSASESQDQNTPILEEFKQAEDQVAAQIPEEA IQIVTEIQSISNELQQEDEQLTVQEEVEEEIQFVTEVQDHSQSILVLEEEDNDQIAPG ILQETQIIAAQLQPEDVQIVAEIEVHNDQILREFEQKEGYNNQKEDIKIAAEIQEQNH QILREFQQEEDQTAAHIQQNSQEIVTDPHNHIDQSGIEVEDLREDQNQTFFSEFQQED QQIPVQKEPHFASEVHYFEHKLKSQIESEIQYYQPAIQYYQQDSRIPVGPVEIRYYNQ EPFGLLEFENQLYQPDLEELANHTAGQSPAEAGQEQQQLASEAKTQTEQNPESNEATE LHPYTECVRKLLELIGEACDSLKAHPEHFQAAGYRLALLQLRQKLANVCHQLVEEAIR GESTKQSVVLLREIFLGIEETELPKQRATGQRDELQNGISMGLEILKRLRQLVTGWYK PKEEESDSGEAETGRNRAADSANSTWKRRHQEENTRPIKYRRVDNSFPRFITNEPAAE DLIPSKSMAERERENQQQQQHQQQQGSKRLSIFNPPVYTQHRVRNEAPYIPNPFDVSD DDEPAQRFANAAGPSARHPQLLYSDAVRLGQNGFVGEARVNGHASRRAPAQAEKSILT HEMERMEHEQYMNLIHTVTHNDSVASRFAKPNPPPLQRIDAQPATWSSMLHNNQSRSL QQHQQQPSSSSSRRPDNRGLSDYARLIRSSSSSSQAERQKPSPAPTPPPQLMRIGSFN NSRASTLSSSSGSSESSNSGSSDSLVMVTAADDGSNERKAANTMTNHTDAAKSPSGQT PSRLAVTDALQRRFASCIYLKDDFVEQFKAKSARIQEETEHRRKLAVVEAKRTTEERR DYEYKLRENIFQYRILHKPIFVIGSVDKPASQPKETKIIPLTKEHIRRYNELMTGEVS TVLVVKFNMHITRRDIRTMLDGEWLNDEVINFYMNLMTERSEKRPGELPATYAMNTFF VPRLLQAGHAGVKRWTRKVDIFSKDVIPVPVHVNGVHWCMAIIHMRNKTIHYYDSMGQ PNQPVLNALEAYLREESLDKRKQPFDTSVFKIESAPNVPQQQNGSDCGVFSCMFAEYI SRDVPITFCQTEMEYFRRKMVLEIAAGEIWN" misc_feature <1215..1811 /gene="Ulp1" /note="Ring-infected erythrocyte surface antigen; Provisional; Region: PTZ00341" /db_xref="CDD:173534" misc_feature <1530..2069 /gene="Ulp1" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature <1881..2363 /gene="Ulp1" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature 5229..5756 /gene="Ulp1" /note="Ulp1 protease family, C-terminal catalytic domain; Region: Peptidase_C48; pfam02902" /db_xref="CDD:397169" polyA_site 6130 /gene="Ulp1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgatcatct aaaatttatt ttatttttat taatttaacg aactttgaag aagcgtgttt 61 ttgtttttcc tgtcaactga ttttcatttt gaaggtcaat tcagttgcag actttaaacg 121 gttcttttgg caatacctgt cccaactcag caaataagat gatccagtac agctttaatg 181 caacgtacca agggcggaaa aggcgtttta aatacaacat ctcagaacca gcggcagaag 241 aaacgcgaag acgcatgtcg aagtcttccg aagaagccgt tgtgaccgat tcagcatccg 301 catccacatc cgcctccgca tcccgcgatg gagtcaatgg ttcgtctgta gaccaccaag 361 gaaactcgcc gccattcggg gctcctggtt cgcaagcgga ttcgggctac gccggcaata 421 gtagtacgaa tcagagccac tactaccacc accaccactt ccagggagca gccgcattcg 481 agagcccggc cttcttgccc gtatcgccgt cgaggggcaa gttctgggca cctggagccg 541 tgcggatacc gaatgcggag ccgttcttcg cctcgccaaa gaggtcttgt ctcacgccgt 601 cgtcgttgtc gttgtcgtcc cagcactcca gtccgcggct cgaggagctg cgcagctcca 661 cgccagtgac gtcgccgcag agagtgcgtg gccacagcgt ttccacctgg aaccagactg 721 cgaactcgga cggacctcag ttggcgccca ggctgcacgc gcagacgccc tcggccgagg 781 aattcgagct gctgtcggag gagcagcggc aagtctatca ggtcggcgag ccaaccagct 841 accggcaact ggccttgcgg gagttcgagg aggtgaacga gcgggtggcc gagcagctgc 901 tgcaggaaag acagctcgct gcagccagga ttcagcagcg aaaccagaga attgcaaccc 961 agattcagcc ggaagaggtc cgggatcaaa aactacaggt tttaggtgag attgagcaaa 1021 cgaaagagct ggtcttgcag gaaacccagc caattgtagc caggaatcaa gacctcaatg 1081 agcagatcgt agttgagata caggagatac agcagattcc acaggaaatc caacaggaag 1141 cccttgtaac tgagataagc gcgatcgagc aaagagaaga gcaggtcgtg gttgtagtcc 1201 tgcaggaaga ccaaaacatt gcaactgaga ttcaagatct caacgaaccg actattctat 1261 ctcagattgt gcaagaaacc caactgattg cggacaagat cctgcaagaa gaccataata 1321 ttgcatccca gattccacag gaagaaattg aggctgcaac tgaggtttca agccagtttg 1381 agccagcaaa agtccagcca attctgtctg aaaatccaga tatcaatgag cagatcgtag 1441 ttgagataca ggaaaagcaa aaccaggagg aagaccagaa gattctgcaa gcaaacatac 1501 cgattgcaac tgaggtaagc gagttcattc agaatattgt agcccagatt ccgcaagagg 1561 acattcagat tgcaactgag gttttaaacg agttcgagcg agcagaagag caggaagacc 1621 cgaaaattgc aactgttaat caagatatcc aagagcaaat tgtagttgag atacaagacg 1681 agccaaacgt atcgcacgtt ccacaggaaa gcgagcagat tgccacagag atcctgcagg 1741 aagatcagct gattgcttca ccaacccagg aggaaaacgt accgactgta actgagatcc 1801 tgcaggaaga ccacggcatt gtagctgaga ctcaggatat caacgaacaa attgtaattg 1861 agacagagga ccagccgatt gtatcgcaga ttccgctgca aattttaagc gatttggagc 1921 caactgaaga gcaggttgca gtccaattcc cgcaggaaga ccaagatatt gcaactgaga 1981 ttcaagatat cagtgagcgg cttgtagttg agatacagaa cgagccgatt gtgccgcagg 2041 ttgcagagga aaagcagccg agcctgcagg aaacccagtt gattgcttcc ccaatccagc 2101 aggaagatca ggagattctg caagcagata taccgattgt aactgaacaa attcagattg 2161 aaactgaggt aaaggttcaa aaccaccagg ttttaaacga tttggagcaa gcagaagagc 2221 agaaagagcc gaaaattgta gctgagaatc aagatatcca tgagcaaact gtaattgaga 2281 tacaggacga gccaattgta tcgcacgatc cacaatccct aattcagcag gaagacatac 2341 cgacggtaac tgaagaagac cgaaacattg taactgagac ccaagatctc aatgaacaaa 2401 ttgtaattga gattgaggac gagccgattg tatcgcagct tccgcaggaa aaccacttga 2461 gtgcatctga gagtcaggat caaaacacgc cgattttgga ggagttcaaa caggcggaag 2521 atcaggttgc agcccagatt ccggaggaag ctattcaaat tgtaaccgaa attcaatcga 2581 tttcgaacga gttacaacag gaagacgagc agcttacagt ccaggaggaa gtggaggaag 2641 aaattcagtt tgtgactgaa gttcaggatc acagccagtc gattttggtt cttgaggagg 2701 aggacaacga ccagattgca ccagggatcc tccaggaaac ccaaattata gcagctcagc 2761 tccagccgga agatgtgcag attgtagctg agatcgaggt gcataacgac cagattttaa 2821 gagagtttga acagaaagaa gggtataaca accagaagga agacatcaag attgcagctg 2881 agattcagga acaaaaccac cagattctac gagagtttca gcaggaagaa gaccagactg 2941 cagcccatat tcagcagaat agccaggaga tcgtaactga ccctcacaat cacatcgacc 3001 agagtggaat tgaggtggaa gacctgcggg aagatcaaaa ccaaacgttt ttcagcgaat 3061 ttcagcagga agatcagcag attccagtac agaaggagcc acacttcgcc tctgaggtgc 3121 actactttga gcacaaactg aagagtcaga tagaatccga gattcagtac tatcagcccg 3181 ccatccagta ctatcagcag gattcgagga ttccggtggg accggtggag attcgctact 3241 acaaccagga gccgttcggc ctgctggaat tcgagaacca gttgtaccag cccgacttgg 3301 aggagctggc caaccacacg gctggccaat ctccggctga agctggtcag gagcagcagc 3361 agctggcctc cgaggcaaag acccaaacgg aacaaaaccc agagtcaaac gaagctaccg 3421 aactacatcc ttacaccgag tgcgtgcgca aactccttga gctcatcggc gaggcctgcg 3481 atagtttgaa agcccatccg gagcacttcc aagccgccgg ctatcgcttg gccctattgc 3541 aattgcgcca gaagctggcc aatgtgtgcc accagctggt agaggaagcc attcgcggag 3601 aatccaccaa gcagagcgtc gtcctgctca gggaaatctt tctgggcatc gaggagactg 3661 agcttccgaa gcagagggcc accgggcaaa gagacgagct ccaaaacgga atttcgatgg 3721 gcttggaaat tttgaagaga ctaagacagt tagttaccgg ttggtataag cccaaggaag 3781 aggaatcgga cagcggggag gcggaaacgg gtcgaaaccg agctgctgat tcagctaatt 3841 caacctggaa aagacgccac caggaggaga atacacggcc gatcaagtac cggcgggtgg 3901 acaactcctt tccccgcttc ataacgaatg agccagccgc cgaggacctg atacccagca 3961 agtccatggc cgagcgggag cgcgagaatc aacagcaaca gcagcatcag cagcagcagg 4021 gctcgaagcg gctctcgata ttcaatccgc ctgtatacac gcagcaccgt gtgcgcaatg 4081 aagcccccta catacccaat cccttcgacg tctcggacga tgatgagcct gcccagagat 4141 ttgccaacgc cgctggtcca tcggccagac acccccagct gctctactcg gatgccgtgc 4201 gtctgggtca gaatggcttc gtcggcgagg cccgtgtaaa cggtcatgcg agccgcagag 4261 ctcccgctca ggcggagaag agcatcctca cccacgagat ggagcgcatg gagcacgaac 4321 agtatatgaa cctcatacac acggtgaccc acaatgattc cgtggccagt cgcttcgcca 4381 agccgaatcc accgccgctg cagcgcattg acgcccagcc ggccacctgg agttccatgc 4441 tgcacaacaa ccaatctcgt tcgttgcagc agcatcagca gcaaccgtcg tcgtcttctt 4501 cgaggcgccc cgataaccgc ggcctctccg actacgccag actgatcaga agcagcagta 4561 gcagcagcca ggcagagcgg caaaagccgt cgccagcacc aacaccgccg ccgcagctaa 4621 tgcgcattgg tagcttcaac aacagccgtg cctccaccct ctccagcagc tcgggaagca 4681 gcgaaagctc aaacagcggc tcctccgatt ccttggtgat ggtcacagcc gcagatgatg 4741 gctcgaatga aaggaaggcc gccaacacga tgaccaacca cactgacgct gcgaaatcgc 4801 ccagtggcca gacgccttcc aggctcgctg tgaccgatgc cctgcaacgt cgcttcgcca 4861 gctgcatcta cctcaaggat gacttcgtgg agcagttcaa ggccaagtcg gctcgcatcc 4921 aggaggaaac cgagcaccgt cgtaaattgg ccgtcgtgga ggctaaacgc accacagagg 4981 aacgacgtga ctacgagtat aaactgcggg agaacatctt ccagtaccgc atcctccaca 5041 agccgatctt cgtcatcgga tcggtggaca agccggcttc tcaaccgaag gaaaccaaaa 5101 tcattccgct taccaaggag cacataaggc gctataacga gttgatgacg ggcgaagtat 5161 cgacggttct tgttgtcaag ttcaacatgc acatcacccg ccgcgacatt cggacaatgc 5221 tggatggcga gtggctgaac gacgaggtga ttaacttcta catgaacttg atgaccgaac 5281 gctcggagaa gcgtcctggc gaactgcccg ccacgtacgc gatgaacaca ttcttcgtgc 5341 cgcgccttct gcaggctgga catgcgggcg taaagcgctg gacccgcaag gtcgatatct 5401 tctccaagga cgtcattccg gtgccggtgc acgtcaacgg cgtccactgg tgcatggcca 5461 tcatccacat gcgcaacaag acgattcact attacgattc catgggacag ccgaatcagc 5521 ccgtgctgaa cgctctggag gcctatctgc gcgaggagtc cttggacaag cgcaagcagc 5581 ccttcgatac gagcgtcttc aagatcgaga gcgcacccaa tgtgccgcaa caacagaatg 5641 gcagcgattg cggcgttttt agctgcatgt tcgccgaata catttcgcgc gatgtcccga 5701 tcaccttttg ccaaacggaa atggagtatt tccgcaggaa gatggtgctg gagattgcgg 5761 ctggtgagat ttggaactaa ggagatagtg tcggtcatcc acacagcaac tagttctagc 5821 ttaggagaag atcggaggga gatcgaagct cttaatttat tttttagtaa tctaacaaca 5881 actttccaag cagggaaacg cagttccagt ccagttcgac ccccggcatg cgtttccctg 5941 ttctcatctc attttacctt cgtacacaaa agacaatggc gaccctttat ggttcgattg 6001 tacacacgaa agcatcaacc atctactact aaatgtaaaa gttttaaata tcagatgaaa 6061 aaggagaatt tagccatctg attgtaacag agaaattagt ttttcaataa agcgctataa 6121 agaaacaaga