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LOCUS XM_070218299 6414 bp mRNA linear INV 09-DEC-2024 (CHES-1-like), transcript variant X4, mRNA. ACCESSION XM_070218299 VERSION XM_070218299.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6414 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6414 /gene="CHES-1-like" /note="Checkpoint suppressor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060311" CDS 180..3953 /gene="CHES-1-like" /codon_start=1 /product="uncharacterized protein CHES-1-like isoform X1" /protein_id="XP_070074400.1" /db_xref="GeneID:108060311" /translation="MSTDNPTQLLTTRDLSQLRGHLQSGAAVASTSPTSSSSVVAAAA SVAAAHGYRTIAAPPAVTSSSASSACSTTSVASAAAPPHISTSNSNMPASASKYVFLQ HNHNGGFTAYDGSTAAATTTTTGSPGGGNIVLLAAEPLEMGTAETLVNVRTTDGDDGE LRSLSWLNDTNLIKGIVTTTTAAGQAGKRGAVAIKTTTAGGGSVAAGGSGVACIVSDF IEELPTNLSESSEQQQEVGVSASSSGSAAVYSTTTVHKGASGTTTVVEYKASKAASNQ QQQQQQQTGYLPTPTRSHGYLPVVVSSAAVAVANPTILSSSPAKQQQQQQQIYVTSNG NTGGGGSGTIYKAATPALSSPTTSNTTTHHPHKKYLREKMHVQMDHSSHVASTVTVVS SPASSNNSSISSSSHAGSGTGSTGSGSSTAAVNGGNSPVPKASSFSTVFEAVNYATSA VNNSNSNGNITPSSQAMLHGVQETPQAVVTTTTLLPPGYSFVNHVASTPHVISAPAHV NSPETPTGAALLPGTYYTTGSTSNTSTTSIQPRTLQLSVSPPPPTSHVHNGSIGGNPA GSGAVNLRSPNSYTSYDNEDSLKEFDLVVSSRMHTSTPQYSVAKNGGANGYNNSSNVI GGGGNGGAGSNTPQKQKHPNNVPYDPLVHTNNKPPYSFSSLIFMAIEGSNEKALPVKE IYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVKVEKAPNMGKGSLWRVEPQQRQNL IQALNRSPFFPNSAVDKISPSLKSPGGGSAYDSVDGVASAVPPSSVVSSQPVGGGATG AGVLPAGVAAVALSSTPTKSNGLVALANGASQATSAARPHSPNGGGSGSHARFDPKLF PNLSKAFRNIREDSANGQPLLQDVLDDELSSGDYQNNNSKYGSNYVALNGGAATANGS GGGAATNGASDGINFERLARDCGADSMDDVHAAAAMLFLKHGPKAFSEPFQNGSAPVI TSSPSEDHTYSAGGNSNADSGSSTPLTNGNVLASVAQAVVQAQNNQGGGPGSDSNCAS SDAAYDSSEENHNITPEEMADRQRHRDGVDALLSLSRSSIVECGSVATTHYHSNGSSG SSHGSPHKRASSHSLEEEHLQQHREQQQQQHQQQHLQQQQQQQHLHQQFGSSQAVYTN GSGSKMALLSSAAANVALAQQQQQQQIHQQDLYTNSAAGHNASIYLSGLNNHCLPSVG GVSSAVAVGVAAAGMLPQHLSAAMVAAAAASKNKVKPLRGLRTKIKRKSAWMR" misc_feature 2148..2375 /gene="CHES-1-like" /note="Forkhead (FH) domain found in Forkhead box protein N2 (FOXN2) and similar proteins; Region: FH_FOXN2-like; cd20031" /db_xref="CDD:410805" misc_feature order(2163..2165,2217..2222,2229..2231,2286..2291, 2295..2300,2307..2309,2328..2330,2355..2363,2367..2369) /gene="CHES-1-like" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:410805" polyA_site 6414 /gene="CHES-1-like" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catttttttg cctttcagcg cagcggacgt aaatatactt attaacaaaa agaaaataag 61 aagaaaccct taaacaataa actgcaataa gtaaacatca gcaaaaaaag aaaaagactc 121 acaaacaaag caaagaaaac aaacaaaacg tcgtcgttga tgaagcaaaa ataattgaca 181 tgtccacaga taatcccaca cagttgctga ccacccgcga tttgagccaa ctgcgtggcc 241 atctgcaatc cggcgcagcg gtggcctcca cttcacccac atcctcctct tctgtggtgg 301 cagcggcggc gtcagtggct gccgcccatg gataccgtac cattgcagct ccaccagcag 361 tcacctcctc ctccgcctcc tccgcctgca gcaccacatc agtagcatca gcagcagcac 421 caccacatat atcaacaagc aatagcaaca tgccggccag tgcctcgaaa tatgtatttc 481 tgcaacacaa tcacaatggt ggcttcaccg cctacgatgg ttccactgct gcggcgacaa 541 cgacgacgac gggaagtccc ggcggtggca acatagtgct cctggcagcg gagccactgg 601 aaatgggcac cgcggagacg ctggtcaatg tgcgaaccac cgacggcgat gatggcgagc 661 tgcgttcgct gtcctggctc aacgatacca atctgatcaa gggcattgtg accaccacaa 721 cggcggccgg gcaggcggga aaacgtggtg cagtggccat taagacgacg acggcgggag 781 gaggatcagt agcagctgga ggatcaggag ttgcttgcat agtgagcgat ttcatagaag 841 agctgcccac aaatctgagt gagagcagcg aacagcagca ggaggttgga gtatcggcgt 901 catcgagtgg atcagcggct gtctacagca ccacaacggt gcacaaggga gccagtggca 961 ccaccacagt ggtggagtac aaagccagca aggcagcctc caatcagcag cagcagcagc 1021 agcagcagac gggctatttg cccacgccaa cgagaagtca tggctatttg ccggtggtgg 1081 tgagcagtgc cgccgttgcc gtggccaatc caactatact ctcctcctcg cccgccaaac 1141 agcagcagca acagcaacag atttatgtga ccagcaatgg gaatacagga ggaggaggat 1201 caggaaccat ctacaaagca gccacgccgg ctttaagttc gccaaccacc agcaacacaa 1261 ccacccacca tccgcacaaa aagtatctgc gcgagaagat gcacgtccag atggatcaca 1321 gcagtcatgt ggcctccacc gtaacggtgg tcagctcgcc ggcctcctcg aacaattcct 1381 cgataagcag ctccagccat gcgggatcgg gaacgggatc cacaggatcg ggatcctcga 1441 cagcggccgt aaatggtggc aatagtccag tgcccaaggc cagtagcttt agcacagtct 1501 tcgaggcggt taactatgcc acatcagcgg ttaacaatag caatagcaat gggaatatta 1561 cgcccagcag ccaggcgatg ctccatggag tccaggagac accgcaggct gtggtcacca 1621 caacaacctt gctgccgccg ggctatagct ttgtcaacca cgtggccagc acgccgcatg 1681 tcatatccgc cccagcacat gtcaactcac cggagacgcc gactggagct gctctgttgc 1741 cgggaactta ctacaccaca ggaagcacta gtaacacatc tacaacctcc attcagccac 1801 gcactctgca gctatccgtt tccccgccgc caccaacgag tcatgtgcac aatggatcaa 1861 taggaggaaa tcctgctgga tctggagcag ttaacctgcg cagtcccaac agctatacca 1921 gctatgacaa cgaggattcg ctcaaggaat tcgatctggt ggtcagctca aggatgcaca 1981 caagcacgcc gcaatattcg gtggccaaga atggaggagc caatggttat aataacagtt 2041 cgaacgtgat tggaggtgga ggcaatggag gagcaggttc caatacgccg caaaagcaga 2101 agcatcccaa taacgtgcca tacgatccgc tagtgcatac caataacaag ccgccatata 2161 gctttagctc cctgattttc atggccatcg agggttcgaa tgaaaaggcc ttgcctgtga 2221 aggagatcta cgcgtggatt gttcagcatt ttccgtactt caagacggca ccgaatggct 2281 ggaagaacag cgtgcgtcac aatctgtcgc tgaacaagag cttcgtgaaa gtggagaagg 2341 cgccgaatat gggcaagggt tcgttgtggc gcgtggagcc gcaacagcgc cagaatctca 2401 tccaggcgct gaatcgatcg cccttctttc ccaactcggc ggtggacaag atcagtccct 2461 cgctcaagag tcccggcggt ggatcggcct acgatagcgt cgatggtgtg gcatcagcag 2521 taccgccttc ctcggttgtc agctcccaac cagttggagg tggagcaacg ggagcaggag 2581 ttcttcccgc cggggtcgct gccgtggctc tgtcctccac gcccacgaaa agcaatggtc 2641 tggtggcgct ggccaacggc gctagtcagg ccacgagtgc agccaggccg cacagtccca 2701 acggcggcgg cagcggcagt catgcccgct tcgatcccaa gctctttccc aatctgtcca 2761 aggcctttcg aaatattcgc gaagattcgg ccaacggaca gccgctgctg caagatgtcc 2821 tcgatgatga gctgtcctct ggggattatc agaataataa tagcaagtat ggcagcaact 2881 atgtggcctt aaatggagga gctgcaactg caaatggcag cggaggaggt gccgccacaa 2941 atggagcttc cgatggcatt aatttcgagc gtctggcccg cgattgcgga gcggacagca 3001 tggacgatgt gcatgcggcg gcggcgatgc tcttcctcaa acacggacca aaggccttca 3061 gtgagccctt ccagaatggc agtgcaccgg tgataacgag ttcccccagc gaggatcata 3121 catattcagc gggcggcaac agcaatgcgg acagtggctc ctccacgccg ctgaccaatg 3181 gcaatgtttt ggccagcgtg gcgcaggccg tcgtccaggc ccagaataac cagggaggag 3241 gtcctggatc cgatagcaat tgcgccagct cggatgccgc ctatgacagc agtgaggaga 3301 atcacaacat cacgcccgag gagatggccg atcggcagcg acatcgcgat ggcgtggacg 3361 ccctgctatc gctttcccgc tcctccattg tggagtgcgg ctcggtggcc accactcatt 3421 atcacagcaa cggcagcagt ggcagcagtc acggttcccc gcacaagcga gcctcgagtc 3481 acagcctgga ggaggagcac ctgcagcagc acagggagca gcagcagcag cagcaccagc 3541 agcaacatct tcagcagcag cagcaacagc aacacctcca tcagcaattt ggcagcagtc 3601 aggcggtcta caccaatggc agtggcagca agatggctct attgagcagt gcagctgcca 3661 atgtggctct ggcccaacag caacagcaac agcagattca ccagcaggat ctatacacca 3721 actcggcggc cgggcataat gccagcatat atctgagtgg gctgaacaat cactgccttc 3781 cctcggtggg cggtgtgagc tcggcggtgg cggtgggcgt ggcggcggcg ggcatgttgc 3841 cgcagcattt gagtgctgcc atggtggcgg cggcggcggc aagcaaaaat aaggtgaaac 3901 ccttgagggg actgcgcacc aagatcaagc gaaagtccgc ctggatgcgg tgaatatggc 3961 ggcaggctgg cggcaaatgc acctaaaaca gccaaccgga aaaaagcacc aaccccccgc 4021 ccccctgcga cctattgttg tctctttcta aagcaaaaaa aaatattgtt caaatcacag 4081 agcatttaga ctaaacaaat ttcgtaacct taaatttttt cctttatttt gctctatttt 4141 ttacaagttt tttgtgtgtt ttttataccc ctttccgtgt ttgttataca aattactgac 4201 tatttttttt atattattat tattattact acatttttta aatttagccc taaatgtatt 4261 ttttttttga ccttaccttt ttgaaccgca attgattgtt ggccatttaa ctattacatt 4321 attaactatt aattatatat atgatttact agccatccta gctgcaattt cttataactc 4381 ttagctgtta agtgcaatta tgattttttt tagcttgtaa ttttaatttg tgcaaatatt 4441 ttacagacca attgaaagcg aaaagatgaa aaacgagaaa aagttataga gtggaaaagt 4501 gttccccgat cgttgttagc ttttaaggca gaaatctagt ttattcgttt taaattgcaa 4561 aatatgaggg acacaaacta agtaaacttt tccagcgtat cagtgacaag gtttatatca 4621 aaaaggaata ggaaaactaa gcgataaacg aaaacaacac caacaaattg agctaagtaa 4681 gaaaaatcaa agaaaacatg aaacaaaata acgaaataaa gcaacaaaaa aaaattgtaa 4741 aaagcgcaag aaaaaggaaa aaagctagaa aacaaacaaa gttaagatcc tttttatttt 4801 ggttatatgt gccgcaagaa aatgtttttc ctacacttat aagatccaaa aaacacaccc 4861 tacttacaat gatctaaaga gaaagcgata taaaacatat acaaaaatat ataaaaatat 4921 atattatata tattatatat agaaagagag ttatttagag aaacttaaga taagccaagc 4981 aagaaaccca caaaggaaca cacatttagc gccttatata ttgagtcctt agctaaaaac 5041 aaaagagaga tctgttgaag aattgtttga actgctttgt tatacgaatg catgagtaaa 5101 tatatatata tatatatatt atataactaa ggccccccta ctcttttcac ccccctcaag 5161 caaatgttaa atcaaagata tttagttaat aagtcaggaa aaacgaaaat ccttgttgta 5221 agcttcattt agatggttac gtagttgaaa tgctaaacat ttgttaaagg gaaatcaaat 5281 caaatccgta agctagccga ttttagttga atgaacctcc aatcctacaa tccccaggtg 5341 tatatacaga atacagagaa tggaataagc gaattagctg ttgaaattat gctgcacatc 5401 tttacatagg catatttaca tattgtggaa accaagaaat acttattaac atttaaataa 5461 gcaaaaggaa gaacgaactt gacaaagaac gccctaagtg tatacacttc atgtaccttt 5521 ttagcaaaaa gcaaaaacgc aaaagcaaag atcgcattaa aaattatata aatataaata 5581 taaaaatata tatatttaaa ttaccactta cgaaactaaa ctaaatgttg atgtcaaaga 5641 gaaaccaatt tgctagttgt taaaaacaaa acagaaaaaa aagaaaatgt taaaaatatt 5701 ttgtttcctc aagaacttat tattacgatt atggtttttt gtttgttaat tttagttcaa 5761 ttacataaga atattgcctt gaagcatgtt aaatggggaa agaaatgtga ctaaatacca 5821 gaagcgagaa caacaaaata attgtatact tagctttaaa cttaaggtcc taaaaaaaaa 5881 ggaaatagaa atcccgaaac accccctttt tataaccata gccccacaaa ccctttgcac 5941 acgacacaca gtgaaagaca atcgccgccc gtgttgttgt tgtcgttgtc tcgcttaagt 6001 ttaaacaaat tctatgtagc tatagacacc tacgagtaat gagtaatata tatatgcata 6061 aattacagac agcaatagca aagtacatac atatacgaca aatattgtta tgcaacctta 6121 agctttagcc gagaaaggtg gataactatc ttcccgatcc cgaatcctat atcctatatc 6181 ccgtatcccc tatatcttct atatctcccc caaaacaaca aacaaccgat gagctaacca 6241 gttttgttaa cgtgtttttt cttctatttt aattattata tcgcatcatt attattatta 6301 ttattattac cgtatatata catgctggta tatattactt atatatttaa ttgattatac 6361 aacttttttt gcgtaccaaa tacacaccaa tcaaaatgtg aaatattttc ttta