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LOCUS XM_070218297 6476 bp mRNA linear INV 09-DEC-2024 (CHES-1-like), transcript variant X2, mRNA. ACCESSION XM_070218297 VERSION XM_070218297.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6476 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6476 /gene="CHES-1-like" /note="Checkpoint suppressor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060311" CDS 242..4015 /gene="CHES-1-like" /codon_start=1 /product="uncharacterized protein CHES-1-like isoform X1" /protein_id="XP_070074398.1" /db_xref="GeneID:108060311" /translation="MSTDNPTQLLTTRDLSQLRGHLQSGAAVASTSPTSSSSVVAAAA SVAAAHGYRTIAAPPAVTSSSASSACSTTSVASAAAPPHISTSNSNMPASASKYVFLQ HNHNGGFTAYDGSTAAATTTTTGSPGGGNIVLLAAEPLEMGTAETLVNVRTTDGDDGE LRSLSWLNDTNLIKGIVTTTTAAGQAGKRGAVAIKTTTAGGGSVAAGGSGVACIVSDF IEELPTNLSESSEQQQEVGVSASSSGSAAVYSTTTVHKGASGTTTVVEYKASKAASNQ QQQQQQQTGYLPTPTRSHGYLPVVVSSAAVAVANPTILSSSPAKQQQQQQQIYVTSNG NTGGGGSGTIYKAATPALSSPTTSNTTTHHPHKKYLREKMHVQMDHSSHVASTVTVVS SPASSNNSSISSSSHAGSGTGSTGSGSSTAAVNGGNSPVPKASSFSTVFEAVNYATSA VNNSNSNGNITPSSQAMLHGVQETPQAVVTTTTLLPPGYSFVNHVASTPHVISAPAHV NSPETPTGAALLPGTYYTTGSTSNTSTTSIQPRTLQLSVSPPPPTSHVHNGSIGGNPA GSGAVNLRSPNSYTSYDNEDSLKEFDLVVSSRMHTSTPQYSVAKNGGANGYNNSSNVI GGGGNGGAGSNTPQKQKHPNNVPYDPLVHTNNKPPYSFSSLIFMAIEGSNEKALPVKE IYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVKVEKAPNMGKGSLWRVEPQQRQNL IQALNRSPFFPNSAVDKISPSLKSPGGGSAYDSVDGVASAVPPSSVVSSQPVGGGATG AGVLPAGVAAVALSSTPTKSNGLVALANGASQATSAARPHSPNGGGSGSHARFDPKLF PNLSKAFRNIREDSANGQPLLQDVLDDELSSGDYQNNNSKYGSNYVALNGGAATANGS GGGAATNGASDGINFERLARDCGADSMDDVHAAAAMLFLKHGPKAFSEPFQNGSAPVI TSSPSEDHTYSAGGNSNADSGSSTPLTNGNVLASVAQAVVQAQNNQGGGPGSDSNCAS SDAAYDSSEENHNITPEEMADRQRHRDGVDALLSLSRSSIVECGSVATTHYHSNGSSG SSHGSPHKRASSHSLEEEHLQQHREQQQQQHQQQHLQQQQQQQHLHQQFGSSQAVYTN GSGSKMALLSSAAANVALAQQQQQQQIHQQDLYTNSAAGHNASIYLSGLNNHCLPSVG GVSSAVAVGVAAAGMLPQHLSAAMVAAAAASKNKVKPLRGLRTKIKRKSAWMR" misc_feature 2210..2437 /gene="CHES-1-like" /note="Forkhead (FH) domain found in Forkhead box protein N2 (FOXN2) and similar proteins; Region: FH_FOXN2-like; cd20031" /db_xref="CDD:410805" misc_feature order(2225..2227,2279..2284,2291..2293,2348..2353, 2357..2362,2369..2371,2390..2392,2417..2425,2429..2431) /gene="CHES-1-like" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:410805" polyA_site 6476 /gene="CHES-1-like" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcttcattc gtttgcctgc tcgcgtgctt tacggttcga gattaacgag aaaatcttgt 61 aaaaaccttt ctgaaaacaa aaaattcaaa atcactcccc agtttcttaa actaaattaa 121 aaaaaaaaaa ctttgagtta catgagagca aaaaagcctt aaacaattgc ctaagcttgt 181 aatatttttt ttgcgtgcca ataaaacgac aacaaaactg cgagaacgcc ttgtatggag 241 catgtccaca gataatccca cacagttgct gaccacccgc gatttgagcc aactgcgtgg 301 ccatctgcaa tccggcgcag cggtggcctc cacttcaccc acatcctcct cttctgtggt 361 ggcagcggcg gcgtcagtgg ctgccgccca tggataccgt accattgcag ctccaccagc 421 agtcacctcc tcctccgcct cctccgcctg cagcaccaca tcagtagcat cagcagcagc 481 accaccacat atatcaacaa gcaatagcaa catgccggcc agtgcctcga aatatgtatt 541 tctgcaacac aatcacaatg gtggcttcac cgcctacgat ggttccactg ctgcggcgac 601 aacgacgacg acgggaagtc ccggcggtgg caacatagtg ctcctggcag cggagccact 661 ggaaatgggc accgcggaga cgctggtcaa tgtgcgaacc accgacggcg atgatggcga 721 gctgcgttcg ctgtcctggc tcaacgatac caatctgatc aagggcattg tgaccaccac 781 aacggcggcc gggcaggcgg gaaaacgtgg tgcagtggcc attaagacga cgacggcggg 841 aggaggatca gtagcagctg gaggatcagg agttgcttgc atagtgagcg atttcataga 901 agagctgccc acaaatctga gtgagagcag cgaacagcag caggaggttg gagtatcggc 961 gtcatcgagt ggatcagcgg ctgtctacag caccacaacg gtgcacaagg gagccagtgg 1021 caccaccaca gtggtggagt acaaagccag caaggcagcc tccaatcagc agcagcagca 1081 gcagcagcag acgggctatt tgcccacgcc aacgagaagt catggctatt tgccggtggt 1141 ggtgagcagt gccgccgttg ccgtggccaa tccaactata ctctcctcct cgcccgccaa 1201 acagcagcag caacagcaac agatttatgt gaccagcaat gggaatacag gaggaggagg 1261 atcaggaacc atctacaaag cagccacgcc ggctttaagt tcgccaacca ccagcaacac 1321 aaccacccac catccgcaca aaaagtatct gcgcgagaag atgcacgtcc agatggatca 1381 cagcagtcat gtggcctcca ccgtaacggt ggtcagctcg ccggcctcct cgaacaattc 1441 ctcgataagc agctccagcc atgcgggatc gggaacggga tccacaggat cgggatcctc 1501 gacagcggcc gtaaatggtg gcaatagtcc agtgcccaag gccagtagct ttagcacagt 1561 cttcgaggcg gttaactatg ccacatcagc ggttaacaat agcaatagca atgggaatat 1621 tacgcccagc agccaggcga tgctccatgg agtccaggag acaccgcagg ctgtggtcac 1681 cacaacaacc ttgctgccgc cgggctatag ctttgtcaac cacgtggcca gcacgccgca 1741 tgtcatatcc gccccagcac atgtcaactc accggagacg ccgactggag ctgctctgtt 1801 gccgggaact tactacacca caggaagcac tagtaacaca tctacaacct ccattcagcc 1861 acgcactctg cagctatccg tttccccgcc gccaccaacg agtcatgtgc acaatggatc 1921 aataggagga aatcctgctg gatctggagc agttaacctg cgcagtccca acagctatac 1981 cagctatgac aacgaggatt cgctcaagga attcgatctg gtggtcagct caaggatgca 2041 cacaagcacg ccgcaatatt cggtggccaa gaatggagga gccaatggtt ataataacag 2101 ttcgaacgtg attggaggtg gaggcaatgg aggagcaggt tccaatacgc cgcaaaagca 2161 gaagcatccc aataacgtgc catacgatcc gctagtgcat accaataaca agccgccata 2221 tagctttagc tccctgattt tcatggccat cgagggttcg aatgaaaagg ccttgcctgt 2281 gaaggagatc tacgcgtgga ttgttcagca ttttccgtac ttcaagacgg caccgaatgg 2341 ctggaagaac agcgtgcgtc acaatctgtc gctgaacaag agcttcgtga aagtggagaa 2401 ggcgccgaat atgggcaagg gttcgttgtg gcgcgtggag ccgcaacagc gccagaatct 2461 catccaggcg ctgaatcgat cgcccttctt tcccaactcg gcggtggaca agatcagtcc 2521 ctcgctcaag agtcccggcg gtggatcggc ctacgatagc gtcgatggtg tggcatcagc 2581 agtaccgcct tcctcggttg tcagctccca accagttgga ggtggagcaa cgggagcagg 2641 agttcttccc gccggggtcg ctgccgtggc tctgtcctcc acgcccacga aaagcaatgg 2701 tctggtggcg ctggccaacg gcgctagtca ggccacgagt gcagccaggc cgcacagtcc 2761 caacggcggc ggcagcggca gtcatgcccg cttcgatccc aagctctttc ccaatctgtc 2821 caaggccttt cgaaatattc gcgaagattc ggccaacgga cagccgctgc tgcaagatgt 2881 cctcgatgat gagctgtcct ctggggatta tcagaataat aatagcaagt atggcagcaa 2941 ctatgtggcc ttaaatggag gagctgcaac tgcaaatggc agcggaggag gtgccgccac 3001 aaatggagct tccgatggca ttaatttcga gcgtctggcc cgcgattgcg gagcggacag 3061 catggacgat gtgcatgcgg cggcggcgat gctcttcctc aaacacggac caaaggcctt 3121 cagtgagccc ttccagaatg gcagtgcacc ggtgataacg agttccccca gcgaggatca 3181 tacatattca gcgggcggca acagcaatgc ggacagtggc tcctccacgc cgctgaccaa 3241 tggcaatgtt ttggccagcg tggcgcaggc cgtcgtccag gcccagaata accagggagg 3301 aggtcctgga tccgatagca attgcgccag ctcggatgcc gcctatgaca gcagtgagga 3361 gaatcacaac atcacgcccg aggagatggc cgatcggcag cgacatcgcg atggcgtgga 3421 cgccctgcta tcgctttccc gctcctccat tgtggagtgc ggctcggtgg ccaccactca 3481 ttatcacagc aacggcagca gtggcagcag tcacggttcc ccgcacaagc gagcctcgag 3541 tcacagcctg gaggaggagc acctgcagca gcacagggag cagcagcagc agcagcacca 3601 gcagcaacat cttcagcagc agcagcaaca gcaacacctc catcagcaat ttggcagcag 3661 tcaggcggtc tacaccaatg gcagtggcag caagatggct ctattgagca gtgcagctgc 3721 caatgtggct ctggcccaac agcaacagca acagcagatt caccagcagg atctatacac 3781 caactcggcg gccgggcata atgccagcat atatctgagt gggctgaaca atcactgcct 3841 tccctcggtg ggcggtgtga gctcggcggt ggcggtgggc gtggcggcgg cgggcatgtt 3901 gccgcagcat ttgagtgctg ccatggtggc ggcggcggcg gcaagcaaaa ataaggtgaa 3961 acccttgagg ggactgcgca ccaagatcaa gcgaaagtcc gcctggatgc ggtgaatatg 4021 gcggcaggct ggcggcaaat gcacctaaaa cagccaaccg gaaaaaagca ccaacccccc 4081 gcccccctgc gacctattgt tgtctctttc taaagcaaaa aaaaatattg ttcaaatcac 4141 agagcattta gactaaacaa atttcgtaac cttaaatttt ttcctttatt ttgctctatt 4201 ttttacaagt tttttgtgtg ttttttatac ccctttccgt gtttgttata caaattactg 4261 actatttttt ttatattatt attattatta ctacattttt taaatttagc cctaaatgta 4321 tttttttttt gaccttacct ttttgaaccg caattgattg ttggccattt aactattaca 4381 ttattaacta ttaattatat atatgattta ctagccatcc tagctgcaat ttcttataac 4441 tcttagctgt taagtgcaat tatgattttt tttagcttgt aattttaatt tgtgcaaata 4501 ttttacagac caattgaaag cgaaaagatg aaaaacgaga aaaagttata gagtggaaaa 4561 gtgttccccg atcgttgtta gcttttaagg cagaaatcta gtttattcgt tttaaattgc 4621 aaaatatgag ggacacaaac taagtaaact tttccagcgt atcagtgaca aggtttatat 4681 caaaaaggaa taggaaaact aagcgataaa cgaaaacaac accaacaaat tgagctaagt 4741 aagaaaaatc aaagaaaaca tgaaacaaaa taacgaaata aagcaacaaa aaaaaattgt 4801 aaaaagcgca agaaaaagga aaaaagctag aaaacaaaca aagttaagat cctttttatt 4861 ttggttatat gtgccgcaag aaaatgtttt tcctacactt ataagatcca aaaaacacac 4921 cctacttaca atgatctaaa gagaaagcga tataaaacat atacaaaaat atataaaaat 4981 atatattata tatattatat atagaaagag agttatttag agaaacttaa gataagccaa 5041 gcaagaaacc cacaaaggaa cacacattta gcgccttata tattgagtcc ttagctaaaa 5101 acaaaagaga gatctgttga agaattgttt gaactgcttt gttatacgaa tgcatgagta 5161 aatatatata tatatatata ttatataact aaggcccccc tactcttttc acccccctca 5221 agcaaatgtt aaatcaaaga tatttagtta ataagtcagg aaaaacgaaa atccttgttg 5281 taagcttcat ttagatggtt acgtagttga aatgctaaac atttgttaaa gggaaatcaa 5341 atcaaatccg taagctagcc gattttagtt gaatgaacct ccaatcctac aatccccagg 5401 tgtatataca gaatacagag aatggaataa gcgaattagc tgttgaaatt atgctgcaca 5461 tctttacata ggcatattta catattgtgg aaaccaagaa atacttatta acatttaaat 5521 aagcaaaagg aagaacgaac ttgacaaaga acgccctaag tgtatacact tcatgtacct 5581 ttttagcaaa aagcaaaaac gcaaaagcaa agatcgcatt aaaaattata taaatataaa 5641 tataaaaata tatatattta aattaccact tacgaaacta aactaaatgt tgatgtcaaa 5701 gagaaaccaa tttgctagtt gttaaaaaca aaacagaaaa aaaagaaaat gttaaaaata 5761 ttttgtttcc tcaagaactt attattacga ttatggtttt ttgtttgtta attttagttc 5821 aattacataa gaatattgcc ttgaagcatg ttaaatgggg aaagaaatgt gactaaatac 5881 cagaagcgag aacaacaaaa taattgtata cttagcttta aacttaaggt cctaaaaaaa 5941 aaggaaatag aaatcccgaa acaccccctt tttataacca tagccccaca aaccctttgc 6001 acacgacaca cagtgaaaga caatcgccgc ccgtgttgtt gttgtcgttg tctcgcttaa 6061 gtttaaacaa attctatgta gctatagaca cctacgagta atgagtaata tatatatgca 6121 taaattacag acagcaatag caaagtacat acatatacga caaatattgt tatgcaacct 6181 taagctttag ccgagaaagg tggataacta tcttcccgat cccgaatcct atatcctata 6241 tcccgtatcc cctatatctt ctatatctcc cccaaaacaa caaacaaccg atgagctaac 6301 cagttttgtt aacgtgtttt ttcttctatt ttaattatta tatcgcatca ttattattat 6361 tattattatt accgtatata tacatgctgg tatatattac ttatatattt aattgattat 6421 acaacttttt ttgcgtacca aatacacacc aatcaaaatg tgaaatattt tcttta