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LOCUS XM_070218293 5649 bp mRNA linear INV 09-DEC-2024 variant X4, mRNA. ACCESSION XM_070218293 VERSION XM_070218293.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5649 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5649 /gene="pod1" /note="coronin pod1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108068133" CDS 301..3528 /gene="pod1" /codon_start=1 /product="coronin-7 isoform X4" /protein_id="XP_070074394.1" /db_xref="GeneID:108068133" /translation="MAWRFKASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGA FMAFNWEHTGSSVAVLPLDDCGRKSKTMPLLHGHTDTVTDLKFSPFHDGLLATASQDC LVKIWHIPEKGLEQSLSDPEAIFSHKQRRVETVGFHPTADGLMYSTAAGCVALFDLST QKEIFSNNEHPEVIQSASWREDGSVLATSCKDKCVRIFDPRAAGSPIQLTAESHQSIK DSRVVWLGNQQRILTTGFDAARLRQVIIRDVRNFSTPEKTLELDCSTGILMPLFDPDT NMLFLAGKGDTTINYLEITDKDPYLIEGLRHTGEQTKGACLVPKRALKVMEAEVNRVL QLTSNMVIPIMYQVPRKTYRDFHADLYPETTGYKTELVAGEWLNGSNQAVPKMSLDPA KREHGDEPIIPRLGPKPFSSTTGDVSFDKVFAVPLAPGSHENISNVGQESGVAELIPP AQGPKPDLIVEIEIKKKHEREPVVGGNGVQKSLTTSERRKIFEQSSESSENSAEGEDR TDADLRRSCSSRSSFAERRRIYENRSKSQVDEKPQSPVPLRREHSKVEPLKPSQQQQQ QQIDTKRISVPEGKLMEEHRRGNGAAGLKKSATEAAFSAASTKRTSTVFGKVSKFRHL KGTPGHKSTHIENLRNLSRQIPGECNGFHANQERVAVPLSGPGGKIAIFELSRPGRLP DGVIPSLVNGSNIMDFQWDPFDAQRLAVACDDGIVKLWHIEAGGLSEPTNSPAGELTA HLDKIYFIRFHPLAADVLLTASYDMTIKLWDLRTMSEKCSLSGHTDQIFDFAWSPCGR LGASVCKDGKIRVYNPRKSETPIREGNGPVGTRGARITWALEGHYIVCTGFDKVSERQ ISVYNAQKLSTPLNTASLDVSPSILIPYYDEDSSTLFVTGKGDSTIYCYEITDEEPYI CPLSHHRCTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLSFTVPRIKSELFQD DLFPPTRITWSATLSAEDWFASNDKAAPKVSLKPEGMETLSSIQQVPAQPVKKPDHPQ FGGQKSEFEINKQQEIQKSVSARMEFTTKLEQDDMEGVDENEWQE" misc_feature 307..501 /gene="pod1" /note="Domain of unknown function (DUF1899); Region: DUF1899; pfam08953" /db_xref="CDD:462645" misc_feature 409..>1467 /gene="pod1" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 547..681 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 694..798 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 820..930 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 949..1080 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1099..1182 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2152..>3306 /gene="pod1" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature order(2281..2283,2299..2301,2317..2322,2371..2376, 2428..2430,2440..2442,2458..2463,2518..2523,2575..2577, 2590..2592,2608..2613,2650..2652,2701..2703,2716..2718, 2734..2739,2776..2781,2836..2838,2848..2850,2878..2883, 2980..2982,2995..2997,3013..3018,3049..3054) /gene="pod1" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 2377..2496 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2536..2646 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2662..2775 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2797..2919 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2938..3009 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 5649 /gene="pod1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aattagtatc ttttgcccga tttttctcag ggattttccg gtatttatat actgccaaaa 61 ataccacagc cgacttgaaa tttaaattgt gctcggatta attgtggtcc cgagttgaaa 121 cgcaactgga gaggaagagg gagaggatag ccgagcgaaa gagagcgact ggcctatacc 181 atatagcata tacaatccac attctatact ccgcactcga gcagcgaaca tccagtgtcc 241 acatccgcat cggatcgcct tcaccatcgc catcacatcg cggagcagca accagtaatt 301 atggcctggc gattcaaggc ttccaagtac aaaaatgccg cacccattgt gcccaaggcg 361 gaggcctgcg tccgcgagat ctgcgtgggc agctaccaga cctacgggaa taatatcgcc 421 gcctccggcg ccttcatggc cttcaactgg gagcacaccg gttccagtgt ggccgtcctc 481 ccgctggacg attgcgggcg gaagagcaag accatgccgc tgctccacgg gcacacggac 541 acagtgacgg acctcaagtt ctcgccgttc cacgacggac tgctggccac cgcctcgcag 601 gattgcctgg ttaagatctg gcacataccg gaaaagggtc tggagcagtc gctctccgat 661 ccggaggcca tcttctcaca caagcagcgt cgcgtggaga cagtgggctt ccatccgacg 721 gccgatggcc tgatgtactc cacagccgcc ggctgtgtgg ccctcttcga tctcagcacc 781 caaaaggaga tcttctcgaa caatgagcac ccggaggtga tacagtcggc cagttggcgc 841 gaggatggct ccgttttggc caccagctgc aaggacaagt gcgtgcgtat cttcgatccc 901 cgagccgccg gttcgcccat ccagttgacc gccgaatcgc accagagcat caaggattcg 961 cgcgtcgtct ggctgggcaa tcagcagcgc atcctgacca ccggtttcga tgccgcccgc 1021 ctgcgtcagg tgatcatccg cgatgtgcgc aacttcagca cgcccgaaaa gaccctcgaa 1081 ctggactgct ccacgggcat tctaatgccg ctcttcgatc ccgacacgaa tatgctcttc 1141 ctggccggca agggcgatac gacgattaac tatctggaga ttacggacaa ggatccgtat 1201 ttgattgagg gactgcgtca caccggcgag cagacgaagg gcgcctgtct ggtgcccaag 1261 cgggcgctca aggtcatgga ggcggaggtc aaccgagtgc tgcagctgac ctctaacatg 1321 gtcataccca ttatgtacca ggtgcccagg aagacatatc gcgatttcca tgccgatctc 1381 tatccggaga ccacgggcta caagacggaa ctggtggccg gcgaatggct gaatggcagc 1441 aaccaggcgg tgcccaagat gagcctcgat cccgccaagc gcgagcatgg cgatgagcca 1501 attattccac gtttgggccc gaagcccttc tccagcacca cgggtgacgt gtcgttcgac 1561 aaggtgttcg ccgttcccct ggcgccggga tcccatgaga acatctcgaa cgtgggccag 1621 gaaagcggag tggcggagct gatcccgccc gcccaggggc caaagccaga tctcattgtg 1681 gaaatcgaaa tcaaaaagaa acacgaaagg gagcctgtgg tgggcggaaa tggagtccag 1741 aaatcgctaa ccacctcgga gcgtcgcaag atattcgagc agagctccga gtcgtcggag 1801 aattcggcgg agggcgaaga tcgcacggat gcggatctgc gacgcagctg ctcctcgagg 1861 agcagctttg ccgagaggcg gcgcatctac gagaatcgct ccaagagtca ggtggacgaa 1921 aagccccagt cgccagtgcc attgcgtcgc gagcactcca aagtggagcc actgaagccc 1981 agtcaacagc agcagcagca gcagatcgac accaagcgca tttcggtgcc ggagggcaaa 2041 ctaatggagg agcatcgccg cgggaatggc gccgccggtt tgaagaaatc cgccacggag 2101 gcggccttca gtgcggccag caccaagcgc acctccaccg tcttcggcaa ggtgtccaag 2161 ttcaggcatt tgaagggcac tcccggccac aagtcgacgc acatcgagaa tttgcgcaat 2221 ctgagccgcc agataccggg cgaatgcaat ggcttccatg ccaaccagga gcgcgtggcg 2281 gttcccctct ccggacccgg cggcaagata gccatcttcg agttgagccg accgggacga 2341 ctgccggatg gcgtgattcc atcgcttgtg aacggcagca acatcatgga cttccagtgg 2401 gatcccttcg atgcccagcg tttggccgtc gcctgcgacg atggcatcgt gaagctctgg 2461 cacatcgaag ccggcggact gagtgagccg acaaattcgc cagccggcga gctgaccgct 2521 cacctggaca agatctactt tatccgtttc catccgctgg ccgccgacgt tctgctgacc 2581 gccagctacg atatgaccat caagctgtgg gatttgcgca ccatgagcga gaagtgctcg 2641 ctgtcggggc acacggatca gatctttgac ttcgcctgga gtccctgcgg ccgtttgggc 2701 gccagcgtgt gcaaggatgg caagattagg gtctacaatc cgaggaaatc ggagacgccc 2761 atcagggagg gcaatggacc ggtgggaact cgaggagctc gcatcacctg ggcgctggag 2821 gggcactaca tagtctgcac tggatttgat aaggtttccg agcgacagat tagcgtgtac 2881 aatgcccaaa agctgtcgac gccattgaac acggccagtt tggatgtgtc gccctcgata 2941 ttgataccct actacgacga ggacagctcc acgctgttcg tcaccggcaa gggcgactcg 3001 accatctact gctacgagat caccgacgag gagccgtaca tctgcccgct gtcgcaccat 3061 cgctgcacct cgctgcacca gggcctcagc ttcctcacca agaaccactg cgatgtggcc 3121 agcgtggagt tctcgaaggc ctatcggctg accaatacca ccatcgagcc gctaagcttc 3181 acagtgcccc gcattaagag cgagctgttc caagacgatc tgttcccacc cacacgcatc 3241 acctggagcg ccacgctaag cgccgaggac tggtttgcca gcaacgataa ggcggcaccc 3301 aaggtcagct tgaagccgga gggcatggag acattatctt ccatacagca agtgccagcg 3361 cagcctgtga agaaaccgga tcatccccag ttcggcggtc agaagtcgga attcgagatc 3421 aacaaacagc aggagatcca gaaatcggtt agcgcgcgca tggagttcac caccaagctg 3481 gagcaggacg acatggaggg cgtggacgag aacgagtggc aggagtagca gtgcagccag 3541 cgtctgcggc ggacatgaat cagttcacaa tttagcgttt aaccaatggg cgtaactctt 3601 ttttttacca atctagacat gacagcagca gaagcaacag caaaagtgct cgacataaac 3661 ataaacaaca tatatatact tgtgggcgag cgtatataga gaactcgtag ttaagccgaa 3721 agtaaaacta acacaacaca cgacatcctc atccctcgat cctcattcct cgatcctcgt 3781 cagaatccca gcatttagtt cctcgctcct ccgccaattt actgcagttg ctcaataatt 3841 gccaaattac aaatcataag ccagttttgt tcgttttgtt tgtgttgttt tttttttaaa 3901 tctatatatt ttgtgtgtat taattttttt tataatttac ccatacatat attttgtgtt 3961 ttttatgtgt gctatttaag tagttagtcc aaaattagtt tagcctactt aggtgtttac 4021 acttacgatt aatttcctgg gttctccccg agtccttcag tttgtgtggc catatatgta 4081 taggatatat ggaaggactt agatgatact acttttacat atacgcatat gtatttccct 4141 ctcagtttgt ttcatgtctg catgcatgcg agtgagtgag tgagagagcg agagagtgtg 4201 tgtctgtccc cctctttcgc attatttcac cccctgtaat cctgtaatcc cagacacctt 4261 ttcattcccc catccaagac aagaaactaa aacatataga ctgtagccaa aaaatatttg 4321 ctgagaatta caatcaagcg agacaagaca atttttgtac tgtataatgc gtaaatcaaa 4381 catactgcaa cagccgaatc aaaccgaaaa gacatgcaaa caacaattcc aaaatgtata 4441 acgaaaagac ttgaacagat ctgaatggat ctccatcctc tgaatatcct gcacccccga 4501 aaaaatcccc tactaacccg aaaaaggaaa gtaataagtt gccattgaaa tgcgtttata 4561 aaaaagtgaa aaatgaaaaa aggcaataga acgtaactcg agtagcatac ccataggcaa 4621 taacgttttg tacttgcaat agaatataca catttacaca tatatataca cgatatatat 4681 atagtatata ttttgtatac caatcgtaac tgaaaaccaa ggccaacttc cggctgaaac 4741 gactgaactg atccaacagc ataatagcga atagagtggc aaatctataa aaatctttcg 4801 aaaacaaaac aagaacaaca taacagacca gaccaattct cgggtaacgg gcaatattgt 4861 gctagacaag gttctattat acagattata tatacacaca cataccatac gcatagttat 4921 aggcatataa acgtcgcaaa gccaattcta tattccatat tccaattcaa aatcaaactc 4981 caagctgcat ttaaatccaa acgccatgga acgactgaca aaagtattcg cttaacattc 5041 tgatctgatc tgatcctcga ctagtactta tatgtcagag attatcccaa aaagaagacg 5101 aatttccaga ggtctgtgga tatggaatcg atttagatcg gggaaacaaa gggatcgcag 5161 ttctataatg tcctcccccc ccaaacaaaa tcccattcca aattccccga accgaccgcc 5221 cgcagatatt atgtcattct gtatttatta gccatattcg attacgattt tcgaacgtct 5281 ctcttattta tatttatatt tatatatatc tataacaata ccaatatacg aaaatacaac 5341 ttcaagcgat atataatacg atgataaacg agtgaaggac gacgattgat tgattgacga 5401 ttcacgattg acgagtgtgt aggcagagag tgaagtagag aagaagtagg atgcagaagc 5461 atcggcagaa ggagcagaat cggaatcaga agcatacaca ttatttatac aatttatttt 5521 acagtacgag tatatccgat aacccccatc cgatactcta gcactaagtt ataattacaa 5581 taataataat gaaggcaaaa atatatttat atacataatt caataaaaaa aacaagcgaa 5641 aaatataaa