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LOCUS XM_070218289 8136 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X10, mRNA. ACCESSION XM_070218289 VERSION XM_070218289.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8136 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8136 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1186..7383 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X5" /protein_id="XP_070074390.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQG SGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSKKHSGY AWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLIFTNCY KYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSHGHGHG HGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQEEIRK LSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGGHAGGV SVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDVAMAFG QLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSGSSKGA KSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAGGGGNA SKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPMSYDEK RQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELESYVAS CLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDESASNKV EAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSNGSNVN NPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAAMLNNN NKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDLSKVPP GGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGGGGGGD LGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASGLKQIP QFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPFGHQQQ QQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQQQAHN NGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQTHQQQQ QLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPKPIESM MPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQNLKNAS SWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKEKKNQK EAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVASNASN ASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNSANSNG PGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGVGSGGA ASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAVLTQVA AHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQGQSSP AQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1285..1605 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1372..1374,1393..1395,1402..1404,1519..1521, 1531..1533,1549..1551) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2653..2955 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2731..2733,2752..2754,2761..2763,2878..2880, 2890..2892,2908..2910) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4081..4275 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7318..7380 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8136 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgtgcccg tcggccgtcc atgtgtgcgt gtgtattcgc attttcagta atttcgaaaa 61 aaaattttgt atatttgatg gcgacagcga ctgttactca caagaaactc gcgcgtttgt 121 cgaaaaatcg tagcgcgtac gtatatatcg gtgtgtagaa attactaaaa attatgttgc 181 aactttttaa cagtcgtgta caatctgcat gttgtatatg ttcaatttaa atacaacaac 241 aatagcaaca acgcaaacgc aacacagttt taagcaacaa caaacaaaca acaaccaaac 301 cgacaagcta aacttggcta aagcaacaac aagcagcaca cccaacaaca aaagcaacaa 361 caaacaccac cagcagtagc agcgcggcca taaacaaaag tcaaaatcaa aaaacattcg 421 gatatattcg gatattatcg cccataaacg gataaggtgc aacagaacgt gtggatttca 481 ctaaagataa ctaggaaaat agaggaaatc cgaaggaaat atttacagcc agtcgcctgc 541 tggaatattg cgactaatag cgaaggattc aaagccacaa tgcctctggt agcagtcgtt 601 gttgtaccat ccttggccct cggatcagct aaagccagtc gattccaatg agaggagcct 661 gggccctgag aatctggagc aggcgagtgc acagacattg ctgagcatga agcatcatac 721 actacggacc actacacagc attatccctt gaacaagaag agatttctat cagaaagcag 781 aaaggcacca ggagcaacag gatcaggcgg aggatcacca ggagtaggag tcgtcgcagg 841 agtcgcagga acagccggag aagaaggcgc agccagtcgc aggaggagga ggtggtcacc 901 ggccacataa gactagtccc ccccctccct aaacccactg aatcccctcc caattgcccg 961 cgcaaaagga gaaccgaaag gaggagcgaa gcggaggaca aggaggagcg caggaggaga 1021 cggagacggc ccgtgtgtgt gtgtgtgtgt gtaggtggag tgtgtgtgtc ggccgtctca 1081 gtcggataag catcaggcat cattcagatt cagatcaaga tccccaaccc aaactgaagc 1141 accagaacca ccagaagaac agcaaccacc accaccacca ccaccatgtc gtccagtgag 1201 ccaccgcctc gctacgagcc acccgtggag ccagtcaatg gcattgtaca gccaccggtg 1261 atgccgccag cggagcgacc cggccgcaat acgaaccaac tgcaatatct gatcaagacg 1321 gtgatgaagg tgatatggaa gcaccacttc tcgtggccct ttcaacagcc cgtcgatgcc 1381 aagaagctca acctgcccga ctaccacaag atcatcaaac agcccatgga catgggcacg 1441 atcaagaagc ggctggagaa caactactac tggtccgcca aggagaccat acacgacttc 1501 aacacgatgt tcaacaattg ctatgtctac aacaagcccg gcgaggatgt cgttgtgatg 1561 gcccagacgc tcgagaaggt cttcctccag aagatcgaat cgatgcccaa ggaggagctc 1621 gaactggagc cggtaacggc caagggcggc aagaagaagc aacgggcgcc ggctacgccc 1681 aagtcatcgt caacgcccgg cggcggtgga gcatccaccg gtggtggctc cggtacggcc 1741 tcctcggcgg ccgttagcag cggagctggt agtggctccg ccaaagtctc ggccgccgcc 1801 tcatccgcgc aacagtccgg cctgcaggga gcgacggcgg gagtgggcgg cggtgcggcg 1861 agcacagcgg gaacccaggc gggttccgga ggagcgggag gagcgaccgc cgcccgaccc 1921 gtttccgcca tgggcggcac ggtttcatcg acggccggcg gtgcaccgtc cataccaccg 1981 attagcacaa tgccaccgca cacggtaccg ggcagtacca atacgacgac gacagcgatg 2041 gccggcggcg ctggcggagg agcaggtgcg gctgcggcca atcccaatgc cgccgccctc 2101 atggccagcc tgctgaatgc gggccaaacg ggcggctatc ccggcgcacc cggtcagacg 2161 gcggtgaata gctcctcgct gctggatggc agcacggccg cagttgcggc agcggcggca 2221 gcagcagcag cagcggcggc ggcggcggga gcgggcggag cagcgggatc cgccggtgga 2281 gcagcgggcg ccggagtgac aataccagcc gtgaacgtca atgccgccaa cgccgtgcag 2341 gcctatgtga atgcgggcgt gagcgtcgga gtggacgccg tgataccgcc gcagcagccc 2401 gccaaaataa agaagggcgt caagcggaag gcggacacaa cgacgccgac ggccaatgcc 2461 tttgaatcgc cttacgcgca aatggactcc aaatcggcca agattgcgac gcggcgggag 2521 tcgaatcgtc agggctcggg atacaacatg tcgccgctgg gcgtctccgg agttcccgga 2581 cttggcggtc tggttgccgg cggcgtcgcc ggcgtggcgg tggccaagaa caaggagaag 2641 ctatccgatg cgctcaagtc gtgcaacgag atcctcaagg agctcttctc gaagaagcac 2701 tcgggctacg cctggccctt ctacaagccg gtggacgcgg aaatgctcgg cctgcacgac 2761 taccacgaca tcatcaagaa gcccatggat ctggggactg tcaagcggaa aatggacaat 2821 cgcgagtaca aaagcgcgcc ggaattcgcc gccgacgtgc gattaatatt caccaactgc 2881 tacaagtaca atccgccaga tcacgatgtc gtggccatgg gtcgcaagct gcaggacgtc 2941 ttcgagatgc gctacgccaa catccccgac gagccggtgg ccaatgcggc ccaccaccac 3001 ggacacggcc acgggcacgg ccatggccac gcccacagtc acgggcatgg tcacggccac 3061 ggtcacggtc acggctacgg cggatcctcc tcactcaagc acgatgccag cgattcgtcc 3121 agcgaggact ccagcgacac ggagaacgaa tcgaactcgg acgaggagcg cagcgccaag 3181 ctgaaaatgc tcgagtccaa gctgctcggc ctgcaggagg agattcgcaa gctgtccgag 3241 gaggcctccg ccaagaagaa ggcgaagaag aagctcaagg agaagaagaa gtcgatgggc 3301 ggtggctccg gttccggttc agcctctcat catggccacg cctcgggcgg cggtgcgaat 3361 gccggtggag caggcgccaa ttccggcggt catgcgggcg gcgtttccgt gcccggcggc 3421 ggcgtcgggg gcctgggtgc cggcggagcg ggcggcgcta atctcagtgc cctgctcagc 3481 ggctcgttgg tcggtcccgg cggagcagcc gtcgccggcg gcgttcccaa tgtgggagca 3541 ctgcacagtc aagtgcacga cgtggccatg gcctttggcc agctggcggg aggcggtgcc 3601 tcggccggcg gcggcggctt tggtgcagga gtgacggcat cgggagcctc ggcgggcggc 3661 aaggcgggca ccctggccgg cgctctggca gcgggcgcag cggccggagc cggcggcaca 3721 actggcagcg gcagtggcag cagtaaaggt gctaagagca agggcggacg aggcgccaag 3781 ggcagcggag gcggcggcgg cgttggaggt agcaataatg ccgctgcggc caattccgct 3841 ggcggtgcag cgggagctgc tgcgggcgga gccggagccg tgggagctgt gggcggcgct 3901 ggagcagcag gcggcggcgg caacgcctcc aagcgggcca agggcagcag ttcggccggt 3961 gcgggcggcg ctgttggcgg tgcgaatgcc agtaccggtg gcgccggggc gcgcggcagc 4021 agcaagaaga agcccagcca ggtgatgaac ttcgactccg aggaggagga cacggccaag 4081 ccaatgtcgt acgatgagaa gcgccagctg tcgctcgaca tcaacaagtt gccaggcgac 4141 aagctgggcc gtgtggtaca catcatccag aaccgggagc catcgctgcg tgactccaat 4201 cccgacgaaa tcgagatcga cttcgagacg ctgaagccgt cgacgctgcg cgagcttgaa 4261 agctatgtgg cgtcgtgttt gcgcaaaaaa acacgtaagc catattataa aaagccttcc 4321 ggcaagtcga aggacgagca gatggccgag aaaaagcagg agctggaaaa gcgcctgcag 4381 gacgtcaccg gccagctggg ggcaagcaag aaaaccgcca agaaagatga gtccgcctcg 4441 aacaaggtcg aggcagtgca gccggcgaat cccgtgtcat cgagttccag ttccagcgat 4501 tcatcgtcgt cgagttcgag tgatagcagt tcgagtgact cgagcgacag tgaagcaggt 4561 gatggtgacg agcgaccgcc ccgcaagaaa aaatcccgag actcgaatgg aagcaatgta 4621 aataatccaa gtataaatgt ggttctgggc ggcaaccatc cgagtggagc gcttacgccg 4681 acgaccctgt tgatgggcct ggaccatgtg gtgaactcca acacgcccac atcacaaata 4741 tccaacctgc tgggcaatgc caatcccctg acggcagctg ccatgctgaa caataacaac 4801 aagacatcgc tgccgggcag caatttcggt ggtgcgccca ctcccggcgc cggtggtaac 4861 atgttgcacg ccggcggcgg cggtgctgca gtttcggcgg cgacggggca gcagcagcag 4921 cagcagcagc acaacaagaa tggaccaaat gatctgagca aagtgccgcc gggtggctcc 4981 atcaccgccg ccctgccgcc gcacagtttc ggaggagccg gcggaggagg aggagcagct 5041 ggagcagcgg caattgtggg cggcaatcag tcgagcggcg gcatacgcat agccagcaat 5101 ttgcacaagc cttccggctt gggaggcggc ggcggcggcg gtgatctggg cgagcatcat 5161 gcggcactgg cggctgccct gacgtccggc gttaacagca ccggcactgc cggcaacaac 5221 aacggcggca gcagcaacaa caacaccaat ccactgggcg gatcgcatgg ggatgcgatg 5281 gccaatgcct cgctggcctc tggcctcaaa cagataccgc agttcgatga tcccgtcgag 5341 cagtcgctgg cctcgctgga gttcagcgcc ggttccacgg gcaagtcgtc gctgacggac 5401 aactttttga tacagcagca cctgatgcag cccgccggac cgcagcaaca gcagcagcag 5461 cagcagcagc aaccctttgg ccatcagcag cagcaacagc agcagcacat ggactacgtg 5521 acggagctgc tgaccaaggg ggcggagaat gtgggcggca tgaacgggaa ccacctgctg 5581 aactttaacc tggacatggc ggcggcctac cagcagaagc atccccagca gcagcagcaa 5641 cagcagcagc agcagcaggc gcacaacaac ggcttcaatg tggccgactt cggcatggcc 5701 ggattcgacg gccttaacat gacagcggcc acagcattcc tcgatctgga gcacacgctc 5761 cagcagcaac agatgcagca gatgcagctg cagcagcagc aacaccagca gcaacagcag 5821 cagacgcacc agcagcagca gcaactaagc cagcagcagc tgcagcagca acagcagcaa 5881 ctgacgcagc agcagcagct gcagcaacag cagcagcaat tccagcagca acaccaacag 5941 cagctccacc agcagcagca gcagcagcag gtggccaaca agctgctgat catacccaag 6001 cccatcgaat cgatgatgcc cagtccgccg gacaagcagc agtcgcagca gcaccagaag 6061 gtcctgccgc cgcagcagtc gccctcggac atgaagctgc atcccagcca ggcggcggcg 6121 gcggccgcgc agggcaagct ggcgcaggcc ttcaaggcgg ccaacgagca gaacctgaag 6181 aacgccagct cgtggtcctc gctggcctcg gccaactctc cccagtcgca cacgtcgagc 6241 agctcgagca gcagcaaggc caagccggcc atggactcgt tccagcagtt ccgcaacaaa 6301 gccaaagaac gcgaccgtct caagctgctg gaggcggccg agaaggagaa gaagaaccag 6361 aaggaggccg ccgagaagga gcagcagcgc aagcaccaca agtcctcctc ctcctcgtcc 6421 tcgtcgtcct cggccgcagc agcccaggcg gcagccgttg cagccgccac agcagcagcg 6481 gcggcggcgg ccctgggagc agcagcagcg gctgcagtgg cctccaatgc ctcgaacgcc 6541 tcgggcggca gcagtagcgg aggcggcggc ggcggtgaat ccagaagcca ggcgatcagc 6601 ggcgaacgcg agcgtgatag ggaccgcgag cgggaacgtg agcgctccgg cagcggtggc 6661 ggccagtccg gcaatgggaa caacagcagc aactcggcca acagcaacgg acccggcagc 6721 gcgggcagcg gcggcagtgg cggcggcggc ggaggcagcg gaccagccag cgccggcgga 6781 ccaaacagcg gcggcggcgg caatgccaac agcaacagtg gcggcggacc ggcgctgctc 6841 aatgccggca gcaatagcaa cagcggcgtg ggcagcggtg gcgccgccag cagcaacagc 6901 aacagcagcg tcggcggcat cgtcggcagc ggcggacccg gctccaatag ccagggcagc 6961 agcggtggcg gcggcggcgg cggaggacct gctagcggcg gcatgggcgg cggggccctc 7021 gactacggtc agcaggtggc ggtgctaacg caggtggcgg cacacgccca ggcgcagcat 7081 gtggcggccg ctgtggccgc tcaggcgatt ctggcggcct cgcccttggg cgccatggag 7141 agcggaagga aaagcgttca cgatgctcag ccgcagatat cgcgggtgga tgacatcaag 7201 gcgtcgccgg gcggccaggg acagagttcg ccggcacagc aatcgccgca ggatcgggcg 7261 gccgccaaac gtgccgagca gcggcgggcc gagcaggagc ggcgcaggcg cgaagcgttg 7321 gctggccaaa tcgatatgaa catgcagagc gatctcatgg ccgccttcga ggagacgctg 7381 taggccaagg cccggagaaa gtcgaccaac cgggccgtag gcgtcagcgg catcacctca 7441 actacaacca ccacctcatc atcctccagc ccatcgaggc ggcggacaag gcgccagcca 7501 cggaccacgt tggacaacgg cctgcaatag cagaagcaac acggctagga cagcaacaac 7561 gacgacagtt cggcatatgg aactgttgga gcaaacagaa aacaaccaac aaccaagcaa 7621 ccaacaaata aaagaaacaa acagcatagg ctaaaaccaa taaagcaatg ttctaaggcg 7681 taattaaaat acgtacattt agtgagtata tatataatgc atatacggaa ggagcgagca 7741 aacaaaaagc aaaatgcaaa aagcaaaatg caaaaagcaa catccaccag caaacaaaaa 7801 cataaacata aagaaaaaca aaaacaaaaa caatacataa cagaatatgg caaatttcct 7861 tcggttagca attgattctt cgcaactttt ttcaaatcac tttcgattat tattgcgtat 7921 tactattaca atgatgataa tggatcgtgg cgacaaggat gtccgcacat ggttccaaag 7981 cttattattt ttaatattat tgattgcata ggcaagttta gttcgtagct atacacttaa 8041 ttaataatgc ttattttttt tcttaattgt aacacacacc tatgcttaga gttgttaact 8101 aatttaaaaa gaaaaaaacc aacaaacaag aaaaac