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LOCUS XM_070218288 7779 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X7, mRNA. ACCESSION XM_070218288 VERSION XM_070218288.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7779 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7779 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 814..7026 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_070074389.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 913..1233 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1000..1002,1021..1023,1030..1032,1147..1149, 1159..1161,1177..1179) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2014..>2634 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2296..2598 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2374..2376,2395..2397,2404..2406,2521..2523, 2533..2535,2551..2553) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 3724..3918 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <6961..7023 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 7779 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgtgcgcta gtgtgtttca cttgagtatt ttatttattt aaataaaatt gatatatttg 61 cccgtagttc aagtgcatgg atagtaggca ggacaaaaat aacaatactt aatcaatgtg 121 tttctggtga atgagctaga atggcgagat ttacagccag tcgcctgctg gaatattgcg 181 actaatagcg aaggattcaa agccacaatg cctctggtag cagtcgttgt tgtaccatcc 241 ttggccctcg gatcagctaa agccagtcga ttccaatgag aggagcctgg gccctgagaa 301 tctggagcag gcgagtgcac agacattgct gagcatgaag catcatacac tacggaccac 361 tacacagcat tatcccttga acaagaagag atttctatca gaaagcagaa aggcaccagg 421 agcaacagga tcaggcggag gatcaccagg agtaggagtc gtcgcaggag tcgcaggaac 481 agccggagaa gaaggcgcag ccagtcgcag gaggaggagg tggtcaccgg ccacataaga 541 ctagtccccc ccctccctaa acccactgaa tcccctccca attgcccgcg caaaaggaga 601 accgaaagga ggagcgaagc ggaggacaag gaggagcgca ggaggagacg gagacggccc 661 gtgtgtgtgt gtgtgtgtgt aggtggagtg tgtgtgtcgg ccgtctcagt cggataagca 721 tcaggcatca ttcagattca gatcaagatc cccaacccaa actgaagcac cagaaccacc 781 agaagaacag caaccaccac caccaccacc accatgtcgt ccagtgagcc accgcctcgc 841 tacgagccac ccgtggagcc agtcaatggc attgtacagc caccggtgat gccgccagcg 901 gagcgacccg gccgcaatac gaaccaactg caatatctga tcaagacggt gatgaaggtg 961 atatggaagc accacttctc gtggcccttt caacagcccg tcgatgccaa gaagctcaac 1021 ctgcccgact accacaagat catcaaacag cccatggaca tgggcacgat caagaagcgg 1081 ctggagaaca actactactg gtccgccaag gagaccatac acgacttcaa cacgatgttc 1141 aacaattgct atgtctacaa caagcccggc gaggatgtcg ttgtgatggc ccagacgctc 1201 gagaaggtct tcctccagaa gatcgaatcg atgcccaagg aggagctcga actggagccg 1261 gtaacggcca agggcggcaa gaagaagcaa cgggcgccgg ctacgcccaa gtcatcgtca 1321 acgcccggcg gcggtggagc atccaccggt ggtggctccg gtacggcctc ctcggcggcc 1381 gttagcagcg gagctggtag tggctccgcc aaagtctcgg ccgccgcctc atccgcgcaa 1441 cagtccggcc tgcagggagc gacggcggga gtgggcggcg gtgcggcgag cacagcggga 1501 acccaggcgg gttccggagg agcgggagga gcgaccgccg cccgacccgt ttccgccatg 1561 ggcggcacgg tttcatcgac ggccggcggt gcaccgtcca taccaccgat tagcacaatg 1621 ccaccgcaca cggtaccggg cagtaccaat acgacgacga cagcgatggc cggcggcgct 1681 ggcggaggag caggtgcggc tgcggccaat cccaatgccg ccgccctcat ggccagcctg 1741 ctgaatgcgg gccaaacggg cggctatccc ggcgcacccg gtcagacggc ggtgaatagc 1801 tcctcgctgc tggatggcag cacggccgca gttgcggcag cggcggcagc agcagcagca 1861 gcggcggcgg cggcgggagc gggcggagca gcgggatccg ccggtggagc agcgggcgcc 1921 ggagtgacaa taccagccgt gaacgtcaat gccgccaacg ccgtgcaggc ctatgtgaat 1981 gcgggcgtga gcgtcggagt ggacgccgtg ataccgccgc agcagcccgc caaaataaag 2041 aagggcgtca agcggaaggc ggacacaacg acgccgacgg ccaatgcctt tgaatcgcct 2101 tacgcgcaaa tggactccaa atcggccaag attgcgacgc ggcgggagtc gaatcgtcag 2161 gatcttacat tccagggctc gggatacaac atgtcgccgc tgggcgtctc cggagttccc 2221 ggacttggcg gtctggttgc cggcggcgtc gccggcgtgg cggtggccaa gaacaaggag 2281 aagctatccg atgcgctcaa gtcgtgcaac gagatcctca aggagctctt ctcgaagaag 2341 cactcgggct acgcctggcc cttctacaag ccggtggacg cggaaatgct cggcctgcac 2401 gactaccacg acatcatcaa gaagcccatg gatctgggga ctgtcaagcg gaaaatggac 2461 aatcgcgagt acaaaagcgc gccggaattc gccgccgacg tgcgattaat attcaccaac 2521 tgctacaagt acaatccgcc agatcacgat gtcgtggcca tgggtcgcaa gctgcaggac 2581 gtcttcgaga tgcgctacgc caacatcccc gacgagccgg tggccaatgc ggcccaccac 2641 cacggacacg gccacgggca cggccatggc cacgcccaca gtcacgggca tggtcacggc 2701 cacggtcacg gtcacggcta cggcggatcc tcctcactca agcacgatgc cagcgattcg 2761 tccagcgagg actccagcga cacggagaac gaatcgaact cggacgagga gcgcagcgcc 2821 aagctgaaaa tgctcgagtc caagctgctc ggcctgcagg aggagattcg caagctgtcc 2881 gaggaggcct ccgccaagaa gaaggcgaag aagaagctca aggagaagaa gaagtcgatg 2941 ggcggtggct ccggttccgg ttcagcctct catcatggcc acgcctcggg cggcggtgcg 3001 aatgccggtg gagcaggcgc caattccggc ggtcatgcgg gcggcgtttc cgtgcccggc 3061 ggcggcgtcg ggggcctggg tgccggcgga gcgggcggcg ctaatctcag tgccctgctc 3121 agcggctcgt tggtcggtcc cggcggagca gccgtcgccg gcggcgttcc caatgtggga 3181 gcactgcaca gtcaagtgca cgacgtggcc atggcctttg gccagctggc gggaggcggt 3241 gcctcggccg gcggcggcgg ctttggtgca ggagtgacgg catcgggagc ctcggcgggc 3301 ggcaaggcgg gcaccctggc cggcgctctg gcagcgggcg cagcggccgg agccggcggc 3361 acaactggca gcggcagtgg cagcagtaaa ggtgctaaga gcaagggcgg acgaggcgcc 3421 aagggcagcg gaggcggcgg cggcgttgga ggtagcaata atgccgctgc ggccaattcc 3481 gctggcggtg cagcgggagc tgctgcgggc ggagccggag ccgtgggagc tgtgggcggc 3541 gctggagcag caggcggcgg cggcaacgcc tccaagcggg ccaagggcag cagttcggcc 3601 ggtgcgggcg gcgctgttgg cggtgcgaat gccagtaccg gtggcgccgg ggcgcgcggc 3661 agcagcaaga agaagcccag ccaggtgatg aacttcgact ccgaggagga ggacacggcc 3721 aagccaatgt cgtacgatga gaagcgccag ctgtcgctcg acatcaacaa gttgccaggc 3781 gacaagctgg gccgtgtggt acacatcatc cagaaccggg agccatcgct gcgtgactcc 3841 aatcccgacg aaatcgagat cgacttcgag acgctgaagc cgtcgacgct gcgcgagctt 3901 gaaagctatg tggcgtcgtg tttgcgcaaa aaaacacgta agccatatta taaaaagcct 3961 tccggcaagt cgaaggacga gcagatggcc gagaaaaagc aggagctgga aaagcgcctg 4021 caggacgtca ccggccagct gggggcaagc aagaaaaccg ccaagaaaga tgagtccgcc 4081 tcgaacaagg tcgaggcagt gcagccggcg aatcccgtgt catcgagttc cagttccagc 4141 gattcatcgt cgtcgagttc gagtgatagc agttcgagtg actcgagcga cagtgaagca 4201 ggtgatggtg acgagcgacc gccccgcaag aaaaaatccc gagactcgaa tggaagcaat 4261 gtaaataatc caagtataaa tgtggttctg ggcggcaacc atccgagtgg agcgcttacg 4321 ccgacgaccc tgttgatggg cctggaccat gtggtgaact ccaacacgcc cacatcacaa 4381 atatccaacc tgctgggcaa tgccaatccc ctgacggcag ctgccatgct gaacaataac 4441 aacaagacat cgctgccggg cagcaatttc ggtggtgcgc ccactcccgg cgccggtggt 4501 aacatgttgc acgccggcgg cggcggtgct gcagtttcgg cggcgacggg gcagcagcag 4561 cagcagcagc agcacaacaa gaatggacca aatgatctga gcaaagtgcc gccgggtggc 4621 tccatcaccg ccgccctgcc gccgcacagt ttcggaggag ccggcggagg aggaggagca 4681 gctggagcag cggcaattgt gggcggcaat cagtcgagcg gcggcatacg catagccagc 4741 aatttgcaca agccttccgg cttgggaggc ggcggcggcg gcggtgatct gggcgagcat 4801 catgcggcac tggcggctgc cctgacgtcc ggcgttaaca gcaccggcac tgccggcaac 4861 aacaacggcg gcagcagcaa caacaacacc aatccactgg gcggatcgca tggggatgcg 4921 atggccaatg cctcgctggc ctctggcctc aaacagatac cgcagttcga tgatcccgtc 4981 gagcagtcgc tggcctcgct ggagttcagc gccggttcca cgggcaagtc gtcgctgacg 5041 gacaactttt tgatacagca gcacctgatg cagcccgccg gaccgcagca acagcagcag 5101 cagcagcagc agcaaccctt tggccatcag cagcagcaac agcagcagca catggactac 5161 gtgacggagc tgctgaccaa gggggcggag aatgtgggcg gcatgaacgg gaaccacctg 5221 ctgaacttta acctggacat ggcggcggcc taccagcaga agcatcccca gcagcagcag 5281 caacagcagc agcagcagca ggcgcacaac aacggcttca atgtggccga cttcggcatg 5341 gccggattcg acggccttaa catgacagcg gccacagcat tcctcgatct ggagcacacg 5401 ctccagcagc aacagatgca gcagatgcag ctgcagcagc agcaacacca gcagcaacag 5461 cagcagacgc accagcagca gcagcaacta agccagcagc agctgcagca gcaacagcag 5521 caactgacgc agcagcagca gctgcagcaa cagcagcagc aattccagca gcaacaccaa 5581 cagcagctcc accagcagca gcagcagcag caggtggcca acaagctgct gatcataccc 5641 aagcccatcg aatcgatgat gcccagtccg ccggacaagc agcagtcgca gcagcaccag 5701 aaggtcctgc cgccgcagca gtcgccctcg gacatgaagc tgcatcccag ccaggcggcg 5761 gcggcggccg cgcagggcaa gctggcgcag gccttcaagg cggccaacga gcagaacctg 5821 aagaacgcca gctcgtggtc ctcgctggcc tcggccaact ctccccagtc gcacacgtcg 5881 agcagctcga gcagcagcaa ggccaagccg gccatggact cgttccagca gttccgcaac 5941 aaagccaaag aacgcgaccg tctcaagctg ctggaggcgg ccgagaagga gaagaagaac 6001 cagaaggagg ccgccgagaa ggagcagcag cgcaagcacc acaagtcctc ctcctcctcg 6061 tcctcgtcgt cctcggccgc agcagcccag gcggcagccg ttgcagccgc cacagcagca 6121 gcggcggcgg cggccctggg agcagcagca gcggctgcag tggcctccaa tgcctcgaac 6181 gcctcgggcg gcagcagtag cggaggcggc ggcggcggtg aatccagaag ccaggcgatc 6241 agcggcgaac gcgagcgtga tagggaccgc gagcgggaac gtgagcgctc cggcagcggt 6301 ggcggccagt ccggcaatgg gaacaacagc agcaactcgg ccaacagcaa cggacccggc 6361 agcgcgggca gcggcggcag tggcggcggc ggcggaggca gcggaccagc cagcgccggc 6421 ggaccaaaca gcggcggcgg cggcaatgcc aacagcaaca gtggcggcgg accggcgctg 6481 ctcaatgccg gcagcaatag caacagcggc gtgggcagcg gtggcgccgc cagcagcaac 6541 agcaacagca gcgtcggcgg catcgtcggc agcggcggac ccggctccaa tagccagggc 6601 agcagcggtg gcggcggcgg cggcggagga cctgctagcg gcggcatggg cggcggggcc 6661 ctcgactacg gtcagcaggt ggcggtgcta acgcaggtgg cggcacacgc ccaggcgcag 6721 catgtggcgg ccgctgtggc cgctcaggcg attctggcgg cctcgccctt gggcgccatg 6781 gagagcggaa ggaaaagcgt tcacgatgct cagccgcaga tatcgcgggt ggatgacatc 6841 aaggcgtcgc cgggcggcca gggacagagt tcgccggcac agcaatcgcc gcaggatcgg 6901 gcggccgcca aacgtgccga gcagcggcgg gccgagcagg agcggcgcag gcgcgaagcg 6961 ttggctggcc aaatcgatat gaacatgcag agcgatctca tggccgcctt cgaggagacg 7021 ctgtaggcca aggcccggag aaagtcgacc aaccgggccg taggcgtcag cggcatcacc 7081 tcaactacaa ccaccacctc atcatcctcc agcccatcga ggcggcggac aaggcgccag 7141 ccacggacca cgttggacaa cggcctgcaa tagcagaagc aacacggcta ggacagcaac 7201 aacgacgaca gttcggcata tggaactgtt ggagcaaaca gaaaacaacc aacaaccaag 7261 caaccaacaa ataaaagaaa caaacagcat aggctaaaac caataaagca atgttctaag 7321 gcgtaattaa aatacgtaca tttagtgagt atatatataa tgcatatacg gaaggagcga 7381 gcaaacaaaa agcaaaatgc aaaaagcaaa atgcaaaaag caacatccac cagcaaacaa 7441 aaacataaac ataaagaaaa acaaaaacaa aaacaataca taacagaata tggcaaattt 7501 ccttcggtta gcaattgatt cttcgcaact tttttcaaat cactttcgat tattattgcg 7561 tattactatt acaatgatga taatggatcg tggcgacaag gatgtccgca catggttcca 7621 aagcttatta tttttaatat tattgattgc ataggcaagt ttagttcgta gctatacact 7681 taattaataa tgcttatttt ttttcttaat tgtaacacac acctatgctt agagttgtta 7741 actaatttaa aaagaaaaaa accaacaaac aagaaaaac