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LOCUS XM_070218287 8108 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X5, mRNA. ACCESSION XM_070218287 VERSION XM_070218287.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8108 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8108 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1143..7355 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_070074388.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1242..1562 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1329..1331,1350..1352,1359..1361,1476..1478, 1488..1490,1506..1508) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2343..>2963 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2625..2927 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2703..2705,2724..2726,2733..2735,2850..2852, 2862..2864,2880..2882) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4053..4247 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7290..7352 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8108 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgcccgtcg gccgtccatg tgtgcgtgtg tattcgcatt ttcagtaatt tcgaaaaaaa 61 attttgtata tttgatggcg acagcgactg ttactcacaa gaaactcgcg cgtttgtcga 121 aaaatcgtag cgcttgcaac tttttaacag tcgtgtacaa tctgcatgtt gtatatgttc 181 aatttaaata caacaacaat agcaacaacg caaacgcaac acagttttaa gcaacaacaa 241 acaaacaaca accaaaccga caagctaaac ttggctaaag caacaacaag cagcacaccc 301 aacaacaaaa gcaacaacaa acaccaccag cagtagcagc gcggccataa acaaaagtca 361 aaatcaaaaa acattcggat atattcggat attatcgccc ataaacggat aaggtgcaac 421 agaacgtgtg gatttcacta aagataacta ggaaaataga ggaaatccga aggaaatatt 481 tacagccagt cgcctgctgg aatattgcga ctaatagcga aggattcaaa gccacaatgc 541 ctctggtagc agtcgttgtt gtaccatcct tggccctcgg atcagctaaa gccagtcgat 601 tccaatgaga ggagcctggg ccctgagaat ctggagcagg cgagtgcaca gacattgctg 661 agcatgaagc atcatacact acggaccact acacagcatt atcccttgaa caagaagaga 721 tttctatcag aaagcagaaa ggcaccagga gcaacaggat caggcggagg atcaccagga 781 gtaggagtcg tcgcaggagt cgcaggaaca gccggagaag aaggcgcagc cagtcgcagg 841 aggaggaggt ggtcaccggc cacataagac tagtcccccc cctccctaaa cccactgaat 901 cccctcccaa ttgcccgcgc aaaaggagaa ccgaaaggag gagcgaagcg gaggacaagg 961 aggagcgcag gaggagacgg agacggcccg tgtgtgtgtg tgtgtgtgta ggtggagtgt 1021 gtgtgtcggc cgtctcagtc ggataagcat caggcatcat tcagattcag atcaagatcc 1081 ccaacccaaa ctgaagcacc agaaccacca gaagaacagc aaccaccacc accaccacca 1141 ccatgtcgtc cagtgagcca ccgcctcgct acgagccacc cgtggagcca gtcaatggca 1201 ttgtacagcc accggtgatg ccgccagcgg agcgacccgg ccgcaatacg aaccaactgc 1261 aatatctgat caagacggtg atgaaggtga tatggaagca ccacttctcg tggccctttc 1321 aacagcccgt cgatgccaag aagctcaacc tgcccgacta ccacaagatc atcaaacagc 1381 ccatggacat gggcacgatc aagaagcggc tggagaacaa ctactactgg tccgccaagg 1441 agaccataca cgacttcaac acgatgttca acaattgcta tgtctacaac aagcccggcg 1501 aggatgtcgt tgtgatggcc cagacgctcg agaaggtctt cctccagaag atcgaatcga 1561 tgcccaagga ggagctcgaa ctggagccgg taacggccaa gggcggcaag aagaagcaac 1621 gggcgccggc tacgcccaag tcatcgtcaa cgcccggcgg cggtggagca tccaccggtg 1681 gtggctccgg tacggcctcc tcggcggccg ttagcagcgg agctggtagt ggctccgcca 1741 aagtctcggc cgccgcctca tccgcgcaac agtccggcct gcagggagcg acggcgggag 1801 tgggcggcgg tgcggcgagc acagcgggaa cccaggcggg ttccggagga gcgggaggag 1861 cgaccgccgc ccgacccgtt tccgccatgg gcggcacggt ttcatcgacg gccggcggtg 1921 caccgtccat accaccgatt agcacaatgc caccgcacac ggtaccgggc agtaccaata 1981 cgacgacgac agcgatggcc ggcggcgctg gcggaggagc aggtgcggct gcggccaatc 2041 ccaatgccgc cgccctcatg gccagcctgc tgaatgcggg ccaaacgggc ggctatcccg 2101 gcgcacccgg tcagacggcg gtgaatagct cctcgctgct ggatggcagc acggccgcag 2161 ttgcggcagc ggcggcagca gcagcagcag cggcggcggc ggcgggagcg ggcggagcag 2221 cgggatccgc cggtggagca gcgggcgccg gagtgacaat accagccgtg aacgtcaatg 2281 ccgccaacgc cgtgcaggcc tatgtgaatg cgggcgtgag cgtcggagtg gacgccgtga 2341 taccgccgca gcagcccgcc aaaataaaga agggcgtcaa gcggaaggcg gacacaacga 2401 cgccgacggc caatgccttt gaatcgcctt acgcgcaaat ggactccaaa tcggccaaga 2461 ttgcgacgcg gcgggagtcg aatcgtcagg atcttacatt ccagggctcg ggatacaaca 2521 tgtcgccgct gggcgtctcc ggagttcccg gacttggcgg tctggttgcc ggcggcgtcg 2581 ccggcgtggc ggtggccaag aacaaggaga agctatccga tgcgctcaag tcgtgcaacg 2641 agatcctcaa ggagctcttc tcgaagaagc actcgggcta cgcctggccc ttctacaagc 2701 cggtggacgc ggaaatgctc ggcctgcacg actaccacga catcatcaag aagcccatgg 2761 atctggggac tgtcaagcgg aaaatggaca atcgcgagta caaaagcgcg ccggaattcg 2821 ccgccgacgt gcgattaata ttcaccaact gctacaagta caatccgcca gatcacgatg 2881 tcgtggccat gggtcgcaag ctgcaggacg tcttcgagat gcgctacgcc aacatccccg 2941 acgagccggt ggccaatgcg gcccaccacc acggacacgg ccacgggcac ggccatggcc 3001 acgcccacag tcacgggcat ggtcacggcc acggtcacgg tcacggctac ggcggatcct 3061 cctcactcaa gcacgatgcc agcgattcgt ccagcgagga ctccagcgac acggagaacg 3121 aatcgaactc ggacgaggag cgcagcgcca agctgaaaat gctcgagtcc aagctgctcg 3181 gcctgcagga ggagattcgc aagctgtccg aggaggcctc cgccaagaag aaggcgaaga 3241 agaagctcaa ggagaagaag aagtcgatgg gcggtggctc cggttccggt tcagcctctc 3301 atcatggcca cgcctcgggc ggcggtgcga atgccggtgg agcaggcgcc aattccggcg 3361 gtcatgcggg cggcgtttcc gtgcccggcg gcggcgtcgg gggcctgggt gccggcggag 3421 cgggcggcgc taatctcagt gccctgctca gcggctcgtt ggtcggtccc ggcggagcag 3481 ccgtcgccgg cggcgttccc aatgtgggag cactgcacag tcaagtgcac gacgtggcca 3541 tggcctttgg ccagctggcg ggaggcggtg cctcggccgg cggcggcggc tttggtgcag 3601 gagtgacggc atcgggagcc tcggcgggcg gcaaggcggg caccctggcc ggcgctctgg 3661 cagcgggcgc agcggccgga gccggcggca caactggcag cggcagtggc agcagtaaag 3721 gtgctaagag caagggcgga cgaggcgcca agggcagcgg aggcggcggc ggcgttggag 3781 gtagcaataa tgccgctgcg gccaattccg ctggcggtgc agcgggagct gctgcgggcg 3841 gagccggagc cgtgggagct gtgggcggcg ctggagcagc aggcggcggc ggcaacgcct 3901 ccaagcgggc caagggcagc agttcggccg gtgcgggcgg cgctgttggc ggtgcgaatg 3961 ccagtaccgg tggcgccggg gcgcgcggca gcagcaagaa gaagcccagc caggtgatga 4021 acttcgactc cgaggaggag gacacggcca agccaatgtc gtacgatgag aagcgccagc 4081 tgtcgctcga catcaacaag ttgccaggcg acaagctggg ccgtgtggta cacatcatcc 4141 agaaccggga gccatcgctg cgtgactcca atcccgacga aatcgagatc gacttcgaga 4201 cgctgaagcc gtcgacgctg cgcgagcttg aaagctatgt ggcgtcgtgt ttgcgcaaaa 4261 aaacacgtaa gccatattat aaaaagcctt ccggcaagtc gaaggacgag cagatggccg 4321 agaaaaagca ggagctggaa aagcgcctgc aggacgtcac cggccagctg ggggcaagca 4381 agaaaaccgc caagaaagat gagtccgcct cgaacaaggt cgaggcagtg cagccggcga 4441 atcccgtgtc atcgagttcc agttccagcg attcatcgtc gtcgagttcg agtgatagca 4501 gttcgagtga ctcgagcgac agtgaagcag gtgatggtga cgagcgaccg ccccgcaaga 4561 aaaaatcccg agactcgaat ggaagcaatg taaataatcc aagtataaat gtggttctgg 4621 gcggcaacca tccgagtgga gcgcttacgc cgacgaccct gttgatgggc ctggaccatg 4681 tggtgaactc caacacgccc acatcacaaa tatccaacct gctgggcaat gccaatcccc 4741 tgacggcagc tgccatgctg aacaataaca acaagacatc gctgccgggc agcaatttcg 4801 gtggtgcgcc cactcccggc gccggtggta acatgttgca cgccggcggc ggcggtgctg 4861 cagtttcggc ggcgacgggg cagcagcagc agcagcagca gcacaacaag aatggaccaa 4921 atgatctgag caaagtgccg ccgggtggct ccatcaccgc cgccctgccg ccgcacagtt 4981 tcggaggagc cggcggagga ggaggagcag ctggagcagc ggcaattgtg ggcggcaatc 5041 agtcgagcgg cggcatacgc atagccagca atttgcacaa gccttccggc ttgggaggcg 5101 gcggcggcgg cggtgatctg ggcgagcatc atgcggcact ggcggctgcc ctgacgtccg 5161 gcgttaacag caccggcact gccggcaaca acaacggcgg cagcagcaac aacaacacca 5221 atccactggg cggatcgcat ggggatgcga tggccaatgc ctcgctggcc tctggcctca 5281 aacagatacc gcagttcgat gatcccgtcg agcagtcgct ggcctcgctg gagttcagcg 5341 ccggttccac gggcaagtcg tcgctgacgg acaacttttt gatacagcag cacctgatgc 5401 agcccgccgg accgcagcaa cagcagcagc agcagcagca gcaacccttt ggccatcagc 5461 agcagcaaca gcagcagcac atggactacg tgacggagct gctgaccaag ggggcggaga 5521 atgtgggcgg catgaacggg aaccacctgc tgaactttaa cctggacatg gcggcggcct 5581 accagcagaa gcatccccag cagcagcagc aacagcagca gcagcagcag gcgcacaaca 5641 acggcttcaa tgtggccgac ttcggcatgg ccggattcga cggccttaac atgacagcgg 5701 ccacagcatt cctcgatctg gagcacacgc tccagcagca acagatgcag cagatgcagc 5761 tgcagcagca gcaacaccag cagcaacagc agcagacgca ccagcagcag cagcaactaa 5821 gccagcagca gctgcagcag caacagcagc aactgacgca gcagcagcag ctgcagcaac 5881 agcagcagca attccagcag caacaccaac agcagctcca ccagcagcag cagcagcagc 5941 aggtggccaa caagctgctg atcataccca agcccatcga atcgatgatg cccagtccgc 6001 cggacaagca gcagtcgcag cagcaccaga aggtcctgcc gccgcagcag tcgccctcgg 6061 acatgaagct gcatcccagc caggcggcgg cggcggccgc gcagggcaag ctggcgcagg 6121 ccttcaaggc ggccaacgag cagaacctga agaacgccag ctcgtggtcc tcgctggcct 6181 cggccaactc tccccagtcg cacacgtcga gcagctcgag cagcagcaag gccaagccgg 6241 ccatggactc gttccagcag ttccgcaaca aagccaaaga acgcgaccgt ctcaagctgc 6301 tggaggcggc cgagaaggag aagaagaacc agaaggaggc cgccgagaag gagcagcagc 6361 gcaagcacca caagtcctcc tcctcctcgt cctcgtcgtc ctcggccgca gcagcccagg 6421 cggcagccgt tgcagccgcc acagcagcag cggcggcggc ggccctggga gcagcagcag 6481 cggctgcagt ggcctccaat gcctcgaacg cctcgggcgg cagcagtagc ggaggcggcg 6541 gcggcggtga atccagaagc caggcgatca gcggcgaacg cgagcgtgat agggaccgcg 6601 agcgggaacg tgagcgctcc ggcagcggtg gcggccagtc cggcaatggg aacaacagca 6661 gcaactcggc caacagcaac ggacccggca gcgcgggcag cggcggcagt ggcggcggcg 6721 gcggaggcag cggaccagcc agcgccggcg gaccaaacag cggcggcggc ggcaatgcca 6781 acagcaacag tggcggcgga ccggcgctgc tcaatgccgg cagcaatagc aacagcggcg 6841 tgggcagcgg tggcgccgcc agcagcaaca gcaacagcag cgtcggcggc atcgtcggca 6901 gcggcggacc cggctccaat agccagggca gcagcggtgg cggcggcggc ggcggaggac 6961 ctgctagcgg cggcatgggc ggcggggccc tcgactacgg tcagcaggtg gcggtgctaa 7021 cgcaggtggc ggcacacgcc caggcgcagc atgtggcggc cgctgtggcc gctcaggcga 7081 ttctggcggc ctcgcccttg ggcgccatgg agagcggaag gaaaagcgtt cacgatgctc 7141 agccgcagat atcgcgggtg gatgacatca aggcgtcgcc gggcggccag ggacagagtt 7201 cgccggcaca gcaatcgccg caggatcggg cggccgccaa acgtgccgag cagcggcggg 7261 ccgagcagga gcggcgcagg cgcgaagcgt tggctggcca aatcgatatg aacatgcaga 7321 gcgatctcat ggccgccttc gaggagacgc tgtaggccaa ggcccggaga aagtcgacca 7381 accgggccgt aggcgtcagc ggcatcacct caactacaac caccacctca tcatcctcca 7441 gcccatcgag gcggcggaca aggcgccagc cacggaccac gttggacaac ggcctgcaat 7501 agcagaagca acacggctag gacagcaaca acgacgacag ttcggcatat ggaactgttg 7561 gagcaaacag aaaacaacca acaaccaagc aaccaacaaa taaaagaaac aaacagcata 7621 ggctaaaacc aataaagcaa tgttctaagg cgtaattaaa atacgtacat ttagtgagta 7681 tatatataat gcatatacgg aaggagcgag caaacaaaaa gcaaaatgca aaaagcaaaa 7741 tgcaaaaagc aacatccacc agcaaacaaa aacataaaca taaagaaaaa caaaaacaaa 7801 aacaatacat aacagaatat ggcaaatttc cttcggttag caattgattc ttcgcaactt 7861 ttttcaaatc actttcgatt attattgcgt attactatta caatgatgat aatggatcgt 7921 ggcgacaagg atgtccgcac atggttccaa agcttattat ttttaatatt attgattgca 7981 taggcaagtt tagttcgtag ctatacactt aattaataat gcttattttt tttcttaatt 8041 gtaacacaca cctatgctta gagttgttaa ctaatttaaa aagaaaaaaa ccaacaaaca 8101 agaaaaac