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LOCUS XM_070218286 8105 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X4, mRNA. ACCESSION XM_070218286 VERSION XM_070218286.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8105 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8105 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1140..7352 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_070074387.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1239..1559 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1326..1328,1347..1349,1356..1358,1473..1475, 1485..1487,1503..1505) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2340..>2960 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2622..2924 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2700..2702,2721..2723,2730..2732,2847..2849, 2859..2861,2877..2879) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4050..4244 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7287..7349 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8105 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatggtaaaa aacggcaaaa attatataaa tttgtgtgcg gcgtgaagtg ctagttgcgg 61 ggcacccgat gcatatggaa aacttgtgaa atttccacta ttttagcgcc aaaaaatgca 121 tttgaaaaat ttgcaacttt ttaacagtcg tgtacaatct gcatgttgta tatgttcaat 181 ttaaatacaa caacaatagc aacaacgcaa acgcaacaca gttttaagca acaacaaaca 241 aacaacaacc aaaccgacaa gctaaacttg gctaaagcaa caacaagcag cacacccaac 301 aacaaaagca acaacaaaca ccaccagcag tagcagcgcg gccataaaca aaagtcaaaa 361 tcaaaaaaca ttcggatata ttcggatatt atcgcccata aacggataag gtgcaacaga 421 acgtgtggat ttcactaaag ataactagga aaatagagga aatccgaagg aaatatttac 481 agccagtcgc ctgctggaat attgcgacta atagcgaagg attcaaagcc acaatgcctc 541 tggtagcagt cgttgttgta ccatccttgg ccctcggatc agctaaagcc agtcgattcc 601 aatgagagga gcctgggccc tgagaatctg gagcaggcga gtgcacagac attgctgagc 661 atgaagcatc atacactacg gaccactaca cagcattatc ccttgaacaa gaagagattt 721 ctatcagaaa gcagaaaggc accaggagca acaggatcag gcggaggatc accaggagta 781 ggagtcgtcg caggagtcgc aggaacagcc ggagaagaag gcgcagccag tcgcaggagg 841 aggaggtggt caccggccac ataagactag tcccccccct ccctaaaccc actgaatccc 901 ctcccaattg cccgcgcaaa aggagaaccg aaaggaggag cgaagcggag gacaaggagg 961 agcgcaggag gagacggaga cggcccgtgt gtgtgtgtgt gtgtgtaggt ggagtgtgtg 1021 tgtcggccgt ctcagtcgga taagcatcag gcatcattca gattcagatc aagatcccca 1081 acccaaactg aagcaccaga accaccagaa gaacagcaac caccaccacc accaccacca 1141 tgtcgtccag tgagccaccg cctcgctacg agccacccgt ggagccagtc aatggcattg 1201 tacagccacc ggtgatgccg ccagcggagc gacccggccg caatacgaac caactgcaat 1261 atctgatcaa gacggtgatg aaggtgatat ggaagcacca cttctcgtgg ccctttcaac 1321 agcccgtcga tgccaagaag ctcaacctgc ccgactacca caagatcatc aaacagccca 1381 tggacatggg cacgatcaag aagcggctgg agaacaacta ctactggtcc gccaaggaga 1441 ccatacacga cttcaacacg atgttcaaca attgctatgt ctacaacaag cccggcgagg 1501 atgtcgttgt gatggcccag acgctcgaga aggtcttcct ccagaagatc gaatcgatgc 1561 ccaaggagga gctcgaactg gagccggtaa cggccaaggg cggcaagaag aagcaacggg 1621 cgccggctac gcccaagtca tcgtcaacgc ccggcggcgg tggagcatcc accggtggtg 1681 gctccggtac ggcctcctcg gcggccgtta gcagcggagc tggtagtggc tccgccaaag 1741 tctcggccgc cgcctcatcc gcgcaacagt ccggcctgca gggagcgacg gcgggagtgg 1801 gcggcggtgc ggcgagcaca gcgggaaccc aggcgggttc cggaggagcg ggaggagcga 1861 ccgccgcccg acccgtttcc gccatgggcg gcacggtttc atcgacggcc ggcggtgcac 1921 cgtccatacc accgattagc acaatgccac cgcacacggt accgggcagt accaatacga 1981 cgacgacagc gatggccggc ggcgctggcg gaggagcagg tgcggctgcg gccaatccca 2041 atgccgccgc cctcatggcc agcctgctga atgcgggcca aacgggcggc tatcccggcg 2101 cacccggtca gacggcggtg aatagctcct cgctgctgga tggcagcacg gccgcagttg 2161 cggcagcggc ggcagcagca gcagcagcgg cggcggcggc gggagcgggc ggagcagcgg 2221 gatccgccgg tggagcagcg ggcgccggag tgacaatacc agccgtgaac gtcaatgccg 2281 ccaacgccgt gcaggcctat gtgaatgcgg gcgtgagcgt cggagtggac gccgtgatac 2341 cgccgcagca gcccgccaaa ataaagaagg gcgtcaagcg gaaggcggac acaacgacgc 2401 cgacggccaa tgcctttgaa tcgccttacg cgcaaatgga ctccaaatcg gccaagattg 2461 cgacgcggcg ggagtcgaat cgtcaggatc ttacattcca gggctcggga tacaacatgt 2521 cgccgctggg cgtctccgga gttcccggac ttggcggtct ggttgccggc ggcgtcgccg 2581 gcgtggcggt ggccaagaac aaggagaagc tatccgatgc gctcaagtcg tgcaacgaga 2641 tcctcaagga gctcttctcg aagaagcact cgggctacgc ctggcccttc tacaagccgg 2701 tggacgcgga aatgctcggc ctgcacgact accacgacat catcaagaag cccatggatc 2761 tggggactgt caagcggaaa atggacaatc gcgagtacaa aagcgcgccg gaattcgccg 2821 ccgacgtgcg attaatattc accaactgct acaagtacaa tccgccagat cacgatgtcg 2881 tggccatggg tcgcaagctg caggacgtct tcgagatgcg ctacgccaac atccccgacg 2941 agccggtggc caatgcggcc caccaccacg gacacggcca cgggcacggc catggccacg 3001 cccacagtca cgggcatggt cacggccacg gtcacggtca cggctacggc ggatcctcct 3061 cactcaagca cgatgccagc gattcgtcca gcgaggactc cagcgacacg gagaacgaat 3121 cgaactcgga cgaggagcgc agcgccaagc tgaaaatgct cgagtccaag ctgctcggcc 3181 tgcaggagga gattcgcaag ctgtccgagg aggcctccgc caagaagaag gcgaagaaga 3241 agctcaagga gaagaagaag tcgatgggcg gtggctccgg ttccggttca gcctctcatc 3301 atggccacgc ctcgggcggc ggtgcgaatg ccggtggagc aggcgccaat tccggcggtc 3361 atgcgggcgg cgtttccgtg cccggcggcg gcgtcggggg cctgggtgcc ggcggagcgg 3421 gcggcgctaa tctcagtgcc ctgctcagcg gctcgttggt cggtcccggc ggagcagccg 3481 tcgccggcgg cgttcccaat gtgggagcac tgcacagtca agtgcacgac gtggccatgg 3541 cctttggcca gctggcggga ggcggtgcct cggccggcgg cggcggcttt ggtgcaggag 3601 tgacggcatc gggagcctcg gcgggcggca aggcgggcac cctggccggc gctctggcag 3661 cgggcgcagc ggccggagcc ggcggcacaa ctggcagcgg cagtggcagc agtaaaggtg 3721 ctaagagcaa gggcggacga ggcgccaagg gcagcggagg cggcggcggc gttggaggta 3781 gcaataatgc cgctgcggcc aattccgctg gcggtgcagc gggagctgct gcgggcggag 3841 ccggagccgt gggagctgtg ggcggcgctg gagcagcagg cggcggcggc aacgcctcca 3901 agcgggccaa gggcagcagt tcggccggtg cgggcggcgc tgttggcggt gcgaatgcca 3961 gtaccggtgg cgccggggcg cgcggcagca gcaagaagaa gcccagccag gtgatgaact 4021 tcgactccga ggaggaggac acggccaagc caatgtcgta cgatgagaag cgccagctgt 4081 cgctcgacat caacaagttg ccaggcgaca agctgggccg tgtggtacac atcatccaga 4141 accgggagcc atcgctgcgt gactccaatc ccgacgaaat cgagatcgac ttcgagacgc 4201 tgaagccgtc gacgctgcgc gagcttgaaa gctatgtggc gtcgtgtttg cgcaaaaaaa 4261 cacgtaagcc atattataaa aagccttccg gcaagtcgaa ggacgagcag atggccgaga 4321 aaaagcagga gctggaaaag cgcctgcagg acgtcaccgg ccagctgggg gcaagcaaga 4381 aaaccgccaa gaaagatgag tccgcctcga acaaggtcga ggcagtgcag ccggcgaatc 4441 ccgtgtcatc gagttccagt tccagcgatt catcgtcgtc gagttcgagt gatagcagtt 4501 cgagtgactc gagcgacagt gaagcaggtg atggtgacga gcgaccgccc cgcaagaaaa 4561 aatcccgaga ctcgaatgga agcaatgtaa ataatccaag tataaatgtg gttctgggcg 4621 gcaaccatcc gagtggagcg cttacgccga cgaccctgtt gatgggcctg gaccatgtgg 4681 tgaactccaa cacgcccaca tcacaaatat ccaacctgct gggcaatgcc aatcccctga 4741 cggcagctgc catgctgaac aataacaaca agacatcgct gccgggcagc aatttcggtg 4801 gtgcgcccac tcccggcgcc ggtggtaaca tgttgcacgc cggcggcggc ggtgctgcag 4861 tttcggcggc gacggggcag cagcagcagc agcagcagca caacaagaat ggaccaaatg 4921 atctgagcaa agtgccgccg ggtggctcca tcaccgccgc cctgccgccg cacagtttcg 4981 gaggagccgg cggaggagga ggagcagctg gagcagcggc aattgtgggc ggcaatcagt 5041 cgagcggcgg catacgcata gccagcaatt tgcacaagcc ttccggcttg ggaggcggcg 5101 gcggcggcgg tgatctgggc gagcatcatg cggcactggc ggctgccctg acgtccggcg 5161 ttaacagcac cggcactgcc ggcaacaaca acggcggcag cagcaacaac aacaccaatc 5221 cactgggcgg atcgcatggg gatgcgatgg ccaatgcctc gctggcctct ggcctcaaac 5281 agataccgca gttcgatgat cccgtcgagc agtcgctggc ctcgctggag ttcagcgccg 5341 gttccacggg caagtcgtcg ctgacggaca actttttgat acagcagcac ctgatgcagc 5401 ccgccggacc gcagcaacag cagcagcagc agcagcagca accctttggc catcagcagc 5461 agcaacagca gcagcacatg gactacgtga cggagctgct gaccaagggg gcggagaatg 5521 tgggcggcat gaacgggaac cacctgctga actttaacct ggacatggcg gcggcctacc 5581 agcagaagca tccccagcag cagcagcaac agcagcagca gcagcaggcg cacaacaacg 5641 gcttcaatgt ggccgacttc ggcatggccg gattcgacgg ccttaacatg acagcggcca 5701 cagcattcct cgatctggag cacacgctcc agcagcaaca gatgcagcag atgcagctgc 5761 agcagcagca acaccagcag caacagcagc agacgcacca gcagcagcag caactaagcc 5821 agcagcagct gcagcagcaa cagcagcaac tgacgcagca gcagcagctg cagcaacagc 5881 agcagcaatt ccagcagcaa caccaacagc agctccacca gcagcagcag cagcagcagg 5941 tggccaacaa gctgctgatc atacccaagc ccatcgaatc gatgatgccc agtccgccgg 6001 acaagcagca gtcgcagcag caccagaagg tcctgccgcc gcagcagtcg ccctcggaca 6061 tgaagctgca tcccagccag gcggcggcgg cggccgcgca gggcaagctg gcgcaggcct 6121 tcaaggcggc caacgagcag aacctgaaga acgccagctc gtggtcctcg ctggcctcgg 6181 ccaactctcc ccagtcgcac acgtcgagca gctcgagcag cagcaaggcc aagccggcca 6241 tggactcgtt ccagcagttc cgcaacaaag ccaaagaacg cgaccgtctc aagctgctgg 6301 aggcggccga gaaggagaag aagaaccaga aggaggccgc cgagaaggag cagcagcgca 6361 agcaccacaa gtcctcctcc tcctcgtcct cgtcgtcctc ggccgcagca gcccaggcgg 6421 cagccgttgc agccgccaca gcagcagcgg cggcggcggc cctgggagca gcagcagcgg 6481 ctgcagtggc ctccaatgcc tcgaacgcct cgggcggcag cagtagcgga ggcggcggcg 6541 gcggtgaatc cagaagccag gcgatcagcg gcgaacgcga gcgtgatagg gaccgcgagc 6601 gggaacgtga gcgctccggc agcggtggcg gccagtccgg caatgggaac aacagcagca 6661 actcggccaa cagcaacgga cccggcagcg cgggcagcgg cggcagtggc ggcggcggcg 6721 gaggcagcgg accagccagc gccggcggac caaacagcgg cggcggcggc aatgccaaca 6781 gcaacagtgg cggcggaccg gcgctgctca atgccggcag caatagcaac agcggcgtgg 6841 gcagcggtgg cgccgccagc agcaacagca acagcagcgt cggcggcatc gtcggcagcg 6901 gcggacccgg ctccaatagc cagggcagca gcggtggcgg cggcggcggc ggaggacctg 6961 ctagcggcgg catgggcggc ggggccctcg actacggtca gcaggtggcg gtgctaacgc 7021 aggtggcggc acacgcccag gcgcagcatg tggcggccgc tgtggccgct caggcgattc 7081 tggcggcctc gcccttgggc gccatggaga gcggaaggaa aagcgttcac gatgctcagc 7141 cgcagatatc gcgggtggat gacatcaagg cgtcgccggg cggccaggga cagagttcgc 7201 cggcacagca atcgccgcag gatcgggcgg ccgccaaacg tgccgagcag cggcgggccg 7261 agcaggagcg gcgcaggcgc gaagcgttgg ctggccaaat cgatatgaac atgcagagcg 7321 atctcatggc cgccttcgag gagacgctgt aggccaaggc ccggagaaag tcgaccaacc 7381 gggccgtagg cgtcagcggc atcacctcaa ctacaaccac cacctcatca tcctccagcc 7441 catcgaggcg gcggacaagg cgccagccac ggaccacgtt ggacaacggc ctgcaatagc 7501 agaagcaaca cggctaggac agcaacaacg acgacagttc ggcatatgga actgttggag 7561 caaacagaaa acaaccaaca accaagcaac caacaaataa aagaaacaaa cagcataggc 7621 taaaaccaat aaagcaatgt tctaaggcgt aattaaaata cgtacattta gtgagtatat 7681 atataatgca tatacggaag gagcgagcaa acaaaaagca aaatgcaaaa agcaaaatgc 7741 aaaaagcaac atccaccagc aaacaaaaac ataaacataa agaaaaacaa aaacaaaaac 7801 aatacataac agaatatggc aaatttcctt cggttagcaa ttgattcttc gcaacttttt 7861 tcaaatcact ttcgattatt attgcgtatt actattacaa tgatgataat ggatcgtggc 7921 gacaaggatg tccgcacatg gttccaaagc ttattatttt taatattatt gattgcatag 7981 gcaagtttag ttcgtagcta tacacttaat taataatgct tatttttttt cttaattgta 8041 acacacacct atgcttagag ttgttaacta atttaaaaag aaaaaaacca acaaacaaga 8101 aaaac