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LOCUS XM_070218285 8125 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X3, mRNA. ACCESSION XM_070218285 VERSION XM_070218285.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8125 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8125 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1160..7372 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_070074386.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1259..1579 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1346..1348,1367..1369,1376..1378,1493..1495, 1505..1507,1523..1525) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2360..>2980 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2642..2944 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2720..2722,2741..2743,2750..2752,2867..2869, 2879..2881,2897..2899) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4070..4264 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7307..7369 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8125 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgtgcccg tcggccgtcc atgtgtgcgt gtgtattcgc attttcagta atttcgaaaa 61 aaaattttgt atatttgatg gcgacagcga ctgttactca caagaaactc gcgcgtttgt 121 cgaaaaatcg tagcgcgtac gtatatatcg ttgcaacttt ttaacagtcg tgtacaatct 181 gcatgttgta tatgttcaat ttaaatacaa caacaatagc aacaacgcaa acgcaacaca 241 gttttaagca acaacaaaca aacaacaacc aaaccgacaa gctaaacttg gctaaagcaa 301 caacaagcag cacacccaac aacaaaagca acaacaaaca ccaccagcag tagcagcgcg 361 gccataaaca aaagtcaaaa tcaaaaaaca ttcggatata ttcggatatt atcgcccata 421 aacggataag gtgcaacaga acgtgtggat ttcactaaag ataactagga aaatagagga 481 aatccgaagg aaatatttac agccagtcgc ctgctggaat attgcgacta atagcgaagg 541 attcaaagcc acaatgcctc tggtagcagt cgttgttgta ccatccttgg ccctcggatc 601 agctaaagcc agtcgattcc aatgagagga gcctgggccc tgagaatctg gagcaggcga 661 gtgcacagac attgctgagc atgaagcatc atacactacg gaccactaca cagcattatc 721 ccttgaacaa gaagagattt ctatcagaaa gcagaaaggc accaggagca acaggatcag 781 gcggaggatc accaggagta ggagtcgtcg caggagtcgc aggaacagcc ggagaagaag 841 gcgcagccag tcgcaggagg aggaggtggt caccggccac ataagactag tcccccccct 901 ccctaaaccc actgaatccc ctcccaattg cccgcgcaaa aggagaaccg aaaggaggag 961 cgaagcggag gacaaggagg agcgcaggag gagacggaga cggcccgtgt gtgtgtgtgt 1021 gtgtgtaggt ggagtgtgtg tgtcggccgt ctcagtcgga taagcatcag gcatcattca 1081 gattcagatc aagatcccca acccaaactg aagcaccaga accaccagaa gaacagcaac 1141 caccaccacc accaccacca tgtcgtccag tgagccaccg cctcgctacg agccacccgt 1201 ggagccagtc aatggcattg tacagccacc ggtgatgccg ccagcggagc gacccggccg 1261 caatacgaac caactgcaat atctgatcaa gacggtgatg aaggtgatat ggaagcacca 1321 cttctcgtgg ccctttcaac agcccgtcga tgccaagaag ctcaacctgc ccgactacca 1381 caagatcatc aaacagccca tggacatggg cacgatcaag aagcggctgg agaacaacta 1441 ctactggtcc gccaaggaga ccatacacga cttcaacacg atgttcaaca attgctatgt 1501 ctacaacaag cccggcgagg atgtcgttgt gatggcccag acgctcgaga aggtcttcct 1561 ccagaagatc gaatcgatgc ccaaggagga gctcgaactg gagccggtaa cggccaaggg 1621 cggcaagaag aagcaacggg cgccggctac gcccaagtca tcgtcaacgc ccggcggcgg 1681 tggagcatcc accggtggtg gctccggtac ggcctcctcg gcggccgtta gcagcggagc 1741 tggtagtggc tccgccaaag tctcggccgc cgcctcatcc gcgcaacagt ccggcctgca 1801 gggagcgacg gcgggagtgg gcggcggtgc ggcgagcaca gcgggaaccc aggcgggttc 1861 cggaggagcg ggaggagcga ccgccgcccg acccgtttcc gccatgggcg gcacggtttc 1921 atcgacggcc ggcggtgcac cgtccatacc accgattagc acaatgccac cgcacacggt 1981 accgggcagt accaatacga cgacgacagc gatggccggc ggcgctggcg gaggagcagg 2041 tgcggctgcg gccaatccca atgccgccgc cctcatggcc agcctgctga atgcgggcca 2101 aacgggcggc tatcccggcg cacccggtca gacggcggtg aatagctcct cgctgctgga 2161 tggcagcacg gccgcagttg cggcagcggc ggcagcagca gcagcagcgg cggcggcggc 2221 gggagcgggc ggagcagcgg gatccgccgg tggagcagcg ggcgccggag tgacaatacc 2281 agccgtgaac gtcaatgccg ccaacgccgt gcaggcctat gtgaatgcgg gcgtgagcgt 2341 cggagtggac gccgtgatac cgccgcagca gcccgccaaa ataaagaagg gcgtcaagcg 2401 gaaggcggac acaacgacgc cgacggccaa tgcctttgaa tcgccttacg cgcaaatgga 2461 ctccaaatcg gccaagattg cgacgcggcg ggagtcgaat cgtcaggatc ttacattcca 2521 gggctcggga tacaacatgt cgccgctggg cgtctccgga gttcccggac ttggcggtct 2581 ggttgccggc ggcgtcgccg gcgtggcggt ggccaagaac aaggagaagc tatccgatgc 2641 gctcaagtcg tgcaacgaga tcctcaagga gctcttctcg aagaagcact cgggctacgc 2701 ctggcccttc tacaagccgg tggacgcgga aatgctcggc ctgcacgact accacgacat 2761 catcaagaag cccatggatc tggggactgt caagcggaaa atggacaatc gcgagtacaa 2821 aagcgcgccg gaattcgccg ccgacgtgcg attaatattc accaactgct acaagtacaa 2881 tccgccagat cacgatgtcg tggccatggg tcgcaagctg caggacgtct tcgagatgcg 2941 ctacgccaac atccccgacg agccggtggc caatgcggcc caccaccacg gacacggcca 3001 cgggcacggc catggccacg cccacagtca cgggcatggt cacggccacg gtcacggtca 3061 cggctacggc ggatcctcct cactcaagca cgatgccagc gattcgtcca gcgaggactc 3121 cagcgacacg gagaacgaat cgaactcgga cgaggagcgc agcgccaagc tgaaaatgct 3181 cgagtccaag ctgctcggcc tgcaggagga gattcgcaag ctgtccgagg aggcctccgc 3241 caagaagaag gcgaagaaga agctcaagga gaagaagaag tcgatgggcg gtggctccgg 3301 ttccggttca gcctctcatc atggccacgc ctcgggcggc ggtgcgaatg ccggtggagc 3361 aggcgccaat tccggcggtc atgcgggcgg cgtttccgtg cccggcggcg gcgtcggggg 3421 cctgggtgcc ggcggagcgg gcggcgctaa tctcagtgcc ctgctcagcg gctcgttggt 3481 cggtcccggc ggagcagccg tcgccggcgg cgttcccaat gtgggagcac tgcacagtca 3541 agtgcacgac gtggccatgg cctttggcca gctggcggga ggcggtgcct cggccggcgg 3601 cggcggcttt ggtgcaggag tgacggcatc gggagcctcg gcgggcggca aggcgggcac 3661 cctggccggc gctctggcag cgggcgcagc ggccggagcc ggcggcacaa ctggcagcgg 3721 cagtggcagc agtaaaggtg ctaagagcaa gggcggacga ggcgccaagg gcagcggagg 3781 cggcggcggc gttggaggta gcaataatgc cgctgcggcc aattccgctg gcggtgcagc 3841 gggagctgct gcgggcggag ccggagccgt gggagctgtg ggcggcgctg gagcagcagg 3901 cggcggcggc aacgcctcca agcgggccaa gggcagcagt tcggccggtg cgggcggcgc 3961 tgttggcggt gcgaatgcca gtaccggtgg cgccggggcg cgcggcagca gcaagaagaa 4021 gcccagccag gtgatgaact tcgactccga ggaggaggac acggccaagc caatgtcgta 4081 cgatgagaag cgccagctgt cgctcgacat caacaagttg ccaggcgaca agctgggccg 4141 tgtggtacac atcatccaga accgggagcc atcgctgcgt gactccaatc ccgacgaaat 4201 cgagatcgac ttcgagacgc tgaagccgtc gacgctgcgc gagcttgaaa gctatgtggc 4261 gtcgtgtttg cgcaaaaaaa cacgtaagcc atattataaa aagccttccg gcaagtcgaa 4321 ggacgagcag atggccgaga aaaagcagga gctggaaaag cgcctgcagg acgtcaccgg 4381 ccagctgggg gcaagcaaga aaaccgccaa gaaagatgag tccgcctcga acaaggtcga 4441 ggcagtgcag ccggcgaatc ccgtgtcatc gagttccagt tccagcgatt catcgtcgtc 4501 gagttcgagt gatagcagtt cgagtgactc gagcgacagt gaagcaggtg atggtgacga 4561 gcgaccgccc cgcaagaaaa aatcccgaga ctcgaatgga agcaatgtaa ataatccaag 4621 tataaatgtg gttctgggcg gcaaccatcc gagtggagcg cttacgccga cgaccctgtt 4681 gatgggcctg gaccatgtgg tgaactccaa cacgcccaca tcacaaatat ccaacctgct 4741 gggcaatgcc aatcccctga cggcagctgc catgctgaac aataacaaca agacatcgct 4801 gccgggcagc aatttcggtg gtgcgcccac tcccggcgcc ggtggtaaca tgttgcacgc 4861 cggcggcggc ggtgctgcag tttcggcggc gacggggcag cagcagcagc agcagcagca 4921 caacaagaat ggaccaaatg atctgagcaa agtgccgccg ggtggctcca tcaccgccgc 4981 cctgccgccg cacagtttcg gaggagccgg cggaggagga ggagcagctg gagcagcggc 5041 aattgtgggc ggcaatcagt cgagcggcgg catacgcata gccagcaatt tgcacaagcc 5101 ttccggcttg ggaggcggcg gcggcggcgg tgatctgggc gagcatcatg cggcactggc 5161 ggctgccctg acgtccggcg ttaacagcac cggcactgcc ggcaacaaca acggcggcag 5221 cagcaacaac aacaccaatc cactgggcgg atcgcatggg gatgcgatgg ccaatgcctc 5281 gctggcctct ggcctcaaac agataccgca gttcgatgat cccgtcgagc agtcgctggc 5341 ctcgctggag ttcagcgccg gttccacggg caagtcgtcg ctgacggaca actttttgat 5401 acagcagcac ctgatgcagc ccgccggacc gcagcaacag cagcagcagc agcagcagca 5461 accctttggc catcagcagc agcaacagca gcagcacatg gactacgtga cggagctgct 5521 gaccaagggg gcggagaatg tgggcggcat gaacgggaac cacctgctga actttaacct 5581 ggacatggcg gcggcctacc agcagaagca tccccagcag cagcagcaac agcagcagca 5641 gcagcaggcg cacaacaacg gcttcaatgt ggccgacttc ggcatggccg gattcgacgg 5701 ccttaacatg acagcggcca cagcattcct cgatctggag cacacgctcc agcagcaaca 5761 gatgcagcag atgcagctgc agcagcagca acaccagcag caacagcagc agacgcacca 5821 gcagcagcag caactaagcc agcagcagct gcagcagcaa cagcagcaac tgacgcagca 5881 gcagcagctg cagcaacagc agcagcaatt ccagcagcaa caccaacagc agctccacca 5941 gcagcagcag cagcagcagg tggccaacaa gctgctgatc atacccaagc ccatcgaatc 6001 gatgatgccc agtccgccgg acaagcagca gtcgcagcag caccagaagg tcctgccgcc 6061 gcagcagtcg ccctcggaca tgaagctgca tcccagccag gcggcggcgg cggccgcgca 6121 gggcaagctg gcgcaggcct tcaaggcggc caacgagcag aacctgaaga acgccagctc 6181 gtggtcctcg ctggcctcgg ccaactctcc ccagtcgcac acgtcgagca gctcgagcag 6241 cagcaaggcc aagccggcca tggactcgtt ccagcagttc cgcaacaaag ccaaagaacg 6301 cgaccgtctc aagctgctgg aggcggccga gaaggagaag aagaaccaga aggaggccgc 6361 cgagaaggag cagcagcgca agcaccacaa gtcctcctcc tcctcgtcct cgtcgtcctc 6421 ggccgcagca gcccaggcgg cagccgttgc agccgccaca gcagcagcgg cggcggcggc 6481 cctgggagca gcagcagcgg ctgcagtggc ctccaatgcc tcgaacgcct cgggcggcag 6541 cagtagcgga ggcggcggcg gcggtgaatc cagaagccag gcgatcagcg gcgaacgcga 6601 gcgtgatagg gaccgcgagc gggaacgtga gcgctccggc agcggtggcg gccagtccgg 6661 caatgggaac aacagcagca actcggccaa cagcaacgga cccggcagcg cgggcagcgg 6721 cggcagtggc ggcggcggcg gaggcagcgg accagccagc gccggcggac caaacagcgg 6781 cggcggcggc aatgccaaca gcaacagtgg cggcggaccg gcgctgctca atgccggcag 6841 caatagcaac agcggcgtgg gcagcggtgg cgccgccagc agcaacagca acagcagcgt 6901 cggcggcatc gtcggcagcg gcggacccgg ctccaatagc cagggcagca gcggtggcgg 6961 cggcggcggc ggaggacctg ctagcggcgg catgggcggc ggggccctcg actacggtca 7021 gcaggtggcg gtgctaacgc aggtggcggc acacgcccag gcgcagcatg tggcggccgc 7081 tgtggccgct caggcgattc tggcggcctc gcccttgggc gccatggaga gcggaaggaa 7141 aagcgttcac gatgctcagc cgcagatatc gcgggtggat gacatcaagg cgtcgccggg 7201 cggccaggga cagagttcgc cggcacagca atcgccgcag gatcgggcgg ccgccaaacg 7261 tgccgagcag cggcgggccg agcaggagcg gcgcaggcgc gaagcgttgg ctggccaaat 7321 cgatatgaac atgcagagcg atctcatggc cgccttcgag gagacgctgt aggccaaggc 7381 ccggagaaag tcgaccaacc gggccgtagg cgtcagcggc atcacctcaa ctacaaccac 7441 cacctcatca tcctccagcc catcgaggcg gcggacaagg cgccagccac ggaccacgtt 7501 ggacaacggc ctgcaatagc agaagcaaca cggctaggac agcaacaacg acgacagttc 7561 ggcatatgga actgttggag caaacagaaa acaaccaaca accaagcaac caacaaataa 7621 aagaaacaaa cagcataggc taaaaccaat aaagcaatgt tctaaggcgt aattaaaata 7681 cgtacattta gtgagtatat atataatgca tatacggaag gagcgagcaa acaaaaagca 7741 aaatgcaaaa agcaaaatgc aaaaagcaac atccaccagc aaacaaaaac ataaacataa 7801 agaaaaacaa aaacaaaaac aatacataac agaatatggc aaatttcctt cggttagcaa 7861 ttgattcttc gcaacttttt tcaaatcact ttcgattatt attgcgtatt actattacaa 7921 tgatgataat ggatcgtggc gacaaggatg tccgcacatg gttccaaagc ttattatttt 7981 taatattatt gattgcatag gcaagtttag ttcgtagcta tacacttaat taataatgct 8041 tatttttttt cttaattgta acacacacct atgcttagag ttgttaacta atttaaaaag 8101 aaaaaaacca acaaacaaga aaaac