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LOCUS XM_070218284 8151 bp mRNA linear INV 09-DEC-2024 (fs(1)h), transcript variant X1, mRNA. ACCESSION XM_070218284 VERSION XM_070218284.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8151 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8151 /gene="fs(1)h" /note="female sterile (1) homeotic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108055736" CDS 1186..7398 /gene="fs(1)h" /codon_start=1 /product="homeotic protein female sterile isoform X1" /protein_id="XP_070074385.1" /db_xref="GeneID:108055736" /translation="MSSSEPPPRYEPPVEPVNGIVQPPVMPPAERPGRNTNQLQYLIK TVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLENNYYWSAKETI HDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIESMPKEELELEPVTAKGGKKKQR APATPKSSSTPGGGGASTGGGSGTASSAAVSSGAGSGSAKVSAAASSAQQSGLQGATA GVGGGAASTAGTQAGSGGAGGATAARPVSAMGGTVSSTAGGAPSIPPISTMPPHTVPG STNTTTTAMAGGAGGGAGAAAANPNAAALMASLLNAGQTGGYPGAPGQTAVNSSSLLD GSTAAVAAAAAAAAAAAAAAGAGGAAGSAGGAAGAGVTIPAVNVNAANAVQAYVNAGV SVGVDAVIPPQQPAKIKKGVKRKADTTTPTANAFESPYAQMDSKSAKIATRRESNRQD LTFQGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKEKLSDALKSCNEILKELFSK KHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKSAPEFAADVRLI FTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGHAHSH GHGHGHGHGHGYGGSSSLKHDASDSSSEDSSDTENESNSDEERSAKLKMLESKLLGLQ EEIRKLSEEASAKKKAKKKLKEKKKSMGGGSGSGSASHHGHASGGGANAGGAGANSGG HAGGVSVPGGGVGGLGAGGAGGANLSALLSGSLVGPGGAAVAGGVPNVGALHSQVHDV AMAFGQLAGGGASAGGGGFGAGVTASGASAGGKAGTLAGALAAGAAAGAGGTTGSGSG SSKGAKSKGGRGAKGSGGGGGVGGSNNAAAANSAGGAAGAAAGGAGAVGAVGGAGAAG GGGNASKRAKGSSSAGAGGAVGGANASTGGAGARGSSKKKPSQVMNFDSEEEDTAKPM SYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEIDFETLKPSTLRELE SYVASCLRKKTRKPYYKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKKTAKKDES ASNKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKKSRDSN GSNVNNPSINVVLGGNHPSGALTPTTLLMGLDHVVNSNTPTSQISNLLGNANPLTAAA MLNNNNKTSLPGSNFGGAPTPGAGGNMLHAGGGGAAVSAATGQQQQQQQHNKNGPNDL SKVPPGGSITAALPPHSFGGAGGGGGAAGAAAIVGGNQSSGGIRIASNLHKPSGLGGG GGGGDLGEHHAALAAALTSGVNSTGTAGNNNGGSSNNNTNPLGGSHGDAMANASLASG LKQIPQFDDPVEQSLASLEFSAGSTGKSSLTDNFLIQQHLMQPAGPQQQQQQQQQQPF GHQQQQQQQHMDYVTELLTKGAENVGGMNGNHLLNFNLDMAAAYQQKHPQQQQQQQQQ QQAHNNGFNVADFGMAGFDGLNMTAATAFLDLEHTLQQQQMQQMQLQQQQHQQQQQQT HQQQQQLSQQQLQQQQQQLTQQQQLQQQQQQFQQQHQQQLHQQQQQQQVANKLLIIPK PIESMMPSPPDKQQSQQHQKVLPPQQSPSDMKLHPSQAAAAAAQGKLAQAFKAANEQN LKNASSWSSLASANSPQSHTSSSSSSSKAKPAMDSFQQFRNKAKERDRLKLLEAAEKE KKNQKEAAEKEQQRKHHKSSSSSSSSSSAAAAQAAAVAAATAAAAAAALGAAAAAAVA SNASNASGGSSSGGGGGGESRSQAISGERERDRDRERERERSGSGGGQSGNGNNSSNS ANSNGPGSAGSGGSGGGGGGSGPASAGGPNSGGGGNANSNSGGGPALLNAGSNSNSGV GSGGAASSNSNSSVGGIVGSGGPGSNSQGSSGGGGGGGGPASGGMGGGALDYGQQVAV LTQVAAHAQAQHVAAAVAAQAILAASPLGAMESGRKSVHDAQPQISRVDDIKASPGGQ GQSSPAQQSPQDRAAAKRAEQRRAEQERRRREALAGQIDMNMQSDLMAAFEETL" misc_feature 1285..1605 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_I_like; cd05497" /db_xref="CDD:99929" misc_feature order(1372..1374,1393..1395,1402..1404,1519..1521, 1531..1533,1549..1551) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99929" misc_feature 2386..>3006 /gene="fs(1)h" /note="Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]; Region: COG5076" /db_xref="CDD:227408" misc_feature 2668..2970 /gene="fs(1)h" /note="Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino...; Region: Bromo_Brdt_II_like; cd05498" /db_xref="CDD:99930" misc_feature order(2746..2748,2767..2769,2776..2778,2893..2895, 2905..2907,2923..2925) /gene="fs(1)h" /note="acetyllysine binding site [active]" /db_xref="CDD:99930" misc_feature 4096..4290 /gene="fs(1)h" /note="Bromodomain extra-terminal - transcription regulation; Region: BET; pfam17035" /db_xref="CDD:435704" misc_feature <7333..7395 /gene="fs(1)h" /note="C-terminal domain of bromodomain protein 4; Region: BRD4_CDT; pfam17105" /db_xref="CDD:465349" polyA_site 8151 /gene="fs(1)h" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgtgcccg tcggccgtcc atgtgtgcgt gtgtattcgc attttcagta atttcgaaaa 61 aaaattttgt atatttgatg gcgacagcga ctgttactca caagaaactc gcgcgtttgt 121 cgaaaaatcg tagcgcgtac gtatatatcg gtgtgtagaa attactaaaa attatgttgc 181 aactttttaa cagtcgtgta caatctgcat gttgtatatg ttcaatttaa atacaacaac 241 aatagcaaca acgcaaacgc aacacagttt taagcaacaa caaacaaaca acaaccaaac 301 cgacaagcta aacttggcta aagcaacaac aagcagcaca cccaacaaca aaagcaacaa 361 caaacaccac cagcagtagc agcgcggcca taaacaaaag tcaaaatcaa aaaacattcg 421 gatatattcg gatattatcg cccataaacg gataaggtgc aacagaacgt gtggatttca 481 ctaaagataa ctaggaaaat agaggaaatc cgaaggaaat atttacagcc agtcgcctgc 541 tggaatattg cgactaatag cgaaggattc aaagccacaa tgcctctggt agcagtcgtt 601 gttgtaccat ccttggccct cggatcagct aaagccagtc gattccaatg agaggagcct 661 gggccctgag aatctggagc aggcgagtgc acagacattg ctgagcatga agcatcatac 721 actacggacc actacacagc attatccctt gaacaagaag agatttctat cagaaagcag 781 aaaggcacca ggagcaacag gatcaggcgg aggatcacca ggagtaggag tcgtcgcagg 841 agtcgcagga acagccggag aagaaggcgc agccagtcgc aggaggagga ggtggtcacc 901 ggccacataa gactagtccc ccccctccct aaacccactg aatcccctcc caattgcccg 961 cgcaaaagga gaaccgaaag gaggagcgaa gcggaggaca aggaggagcg caggaggaga 1021 cggagacggc ccgtgtgtgt gtgtgtgtgt gtaggtggag tgtgtgtgtc ggccgtctca 1081 gtcggataag catcaggcat cattcagatt cagatcaaga tccccaaccc aaactgaagc 1141 accagaacca ccagaagaac agcaaccacc accaccacca ccaccatgtc gtccagtgag 1201 ccaccgcctc gctacgagcc acccgtggag ccagtcaatg gcattgtaca gccaccggtg 1261 atgccgccag cggagcgacc cggccgcaat acgaaccaac tgcaatatct gatcaagacg 1321 gtgatgaagg tgatatggaa gcaccacttc tcgtggccct ttcaacagcc cgtcgatgcc 1381 aagaagctca acctgcccga ctaccacaag atcatcaaac agcccatgga catgggcacg 1441 atcaagaagc ggctggagaa caactactac tggtccgcca aggagaccat acacgacttc 1501 aacacgatgt tcaacaattg ctatgtctac aacaagcccg gcgaggatgt cgttgtgatg 1561 gcccagacgc tcgagaaggt cttcctccag aagatcgaat cgatgcccaa ggaggagctc 1621 gaactggagc cggtaacggc caagggcggc aagaagaagc aacgggcgcc ggctacgccc 1681 aagtcatcgt caacgcccgg cggcggtgga gcatccaccg gtggtggctc cggtacggcc 1741 tcctcggcgg ccgttagcag cggagctggt agtggctccg ccaaagtctc ggccgccgcc 1801 tcatccgcgc aacagtccgg cctgcaggga gcgacggcgg gagtgggcgg cggtgcggcg 1861 agcacagcgg gaacccaggc gggttccgga ggagcgggag gagcgaccgc cgcccgaccc 1921 gtttccgcca tgggcggcac ggtttcatcg acggccggcg gtgcaccgtc cataccaccg 1981 attagcacaa tgccaccgca cacggtaccg ggcagtacca atacgacgac gacagcgatg 2041 gccggcggcg ctggcggagg agcaggtgcg gctgcggcca atcccaatgc cgccgccctc 2101 atggccagcc tgctgaatgc gggccaaacg ggcggctatc ccggcgcacc cggtcagacg 2161 gcggtgaata gctcctcgct gctggatggc agcacggccg cagttgcggc agcggcggca 2221 gcagcagcag cagcggcggc ggcggcggga gcgggcggag cagcgggatc cgccggtgga 2281 gcagcgggcg ccggagtgac aataccagcc gtgaacgtca atgccgccaa cgccgtgcag 2341 gcctatgtga atgcgggcgt gagcgtcgga gtggacgccg tgataccgcc gcagcagccc 2401 gccaaaataa agaagggcgt caagcggaag gcggacacaa cgacgccgac ggccaatgcc 2461 tttgaatcgc cttacgcgca aatggactcc aaatcggcca agattgcgac gcggcgggag 2521 tcgaatcgtc aggatcttac attccagggc tcgggataca acatgtcgcc gctgggcgtc 2581 tccggagttc ccggacttgg cggtctggtt gccggcggcg tcgccggcgt ggcggtggcc 2641 aagaacaagg agaagctatc cgatgcgctc aagtcgtgca acgagatcct caaggagctc 2701 ttctcgaaga agcactcggg ctacgcctgg cccttctaca agccggtgga cgcggaaatg 2761 ctcggcctgc acgactacca cgacatcatc aagaagccca tggatctggg gactgtcaag 2821 cggaaaatgg acaatcgcga gtacaaaagc gcgccggaat tcgccgccga cgtgcgatta 2881 atattcacca actgctacaa gtacaatccg ccagatcacg atgtcgtggc catgggtcgc 2941 aagctgcagg acgtcttcga gatgcgctac gccaacatcc ccgacgagcc ggtggccaat 3001 gcggcccacc accacggaca cggccacggg cacggccatg gccacgccca cagtcacggg 3061 catggtcacg gccacggtca cggtcacggc tacggcggat cctcctcact caagcacgat 3121 gccagcgatt cgtccagcga ggactccagc gacacggaga acgaatcgaa ctcggacgag 3181 gagcgcagcg ccaagctgaa aatgctcgag tccaagctgc tcggcctgca ggaggagatt 3241 cgcaagctgt ccgaggaggc ctccgccaag aagaaggcga agaagaagct caaggagaag 3301 aagaagtcga tgggcggtgg ctccggttcc ggttcagcct ctcatcatgg ccacgcctcg 3361 ggcggcggtg cgaatgccgg tggagcaggc gccaattccg gcggtcatgc gggcggcgtt 3421 tccgtgcccg gcggcggcgt cgggggcctg ggtgccggcg gagcgggcgg cgctaatctc 3481 agtgccctgc tcagcggctc gttggtcggt cccggcggag cagccgtcgc cggcggcgtt 3541 cccaatgtgg gagcactgca cagtcaagtg cacgacgtgg ccatggcctt tggccagctg 3601 gcgggaggcg gtgcctcggc cggcggcggc ggctttggtg caggagtgac ggcatcggga 3661 gcctcggcgg gcggcaaggc gggcaccctg gccggcgctc tggcagcggg cgcagcggcc 3721 ggagccggcg gcacaactgg cagcggcagt ggcagcagta aaggtgctaa gagcaagggc 3781 ggacgaggcg ccaagggcag cggaggcggc ggcggcgttg gaggtagcaa taatgccgct 3841 gcggccaatt ccgctggcgg tgcagcggga gctgctgcgg gcggagccgg agccgtggga 3901 gctgtgggcg gcgctggagc agcaggcggc ggcggcaacg cctccaagcg ggccaagggc 3961 agcagttcgg ccggtgcggg cggcgctgtt ggcggtgcga atgccagtac cggtggcgcc 4021 ggggcgcgcg gcagcagcaa gaagaagccc agccaggtga tgaacttcga ctccgaggag 4081 gaggacacgg ccaagccaat gtcgtacgat gagaagcgcc agctgtcgct cgacatcaac 4141 aagttgccag gcgacaagct gggccgtgtg gtacacatca tccagaaccg ggagccatcg 4201 ctgcgtgact ccaatcccga cgaaatcgag atcgacttcg agacgctgaa gccgtcgacg 4261 ctgcgcgagc ttgaaagcta tgtggcgtcg tgtttgcgca aaaaaacacg taagccatat 4321 tataaaaagc cttccggcaa gtcgaaggac gagcagatgg ccgagaaaaa gcaggagctg 4381 gaaaagcgcc tgcaggacgt caccggccag ctgggggcaa gcaagaaaac cgccaagaaa 4441 gatgagtccg cctcgaacaa ggtcgaggca gtgcagccgg cgaatcccgt gtcatcgagt 4501 tccagttcca gcgattcatc gtcgtcgagt tcgagtgata gcagttcgag tgactcgagc 4561 gacagtgaag caggtgatgg tgacgagcga ccgccccgca agaaaaaatc ccgagactcg 4621 aatggaagca atgtaaataa tccaagtata aatgtggttc tgggcggcaa ccatccgagt 4681 ggagcgctta cgccgacgac cctgttgatg ggcctggacc atgtggtgaa ctccaacacg 4741 cccacatcac aaatatccaa cctgctgggc aatgccaatc ccctgacggc agctgccatg 4801 ctgaacaata acaacaagac atcgctgccg ggcagcaatt tcggtggtgc gcccactccc 4861 ggcgccggtg gtaacatgtt gcacgccggc ggcggcggtg ctgcagtttc ggcggcgacg 4921 gggcagcagc agcagcagca gcagcacaac aagaatggac caaatgatct gagcaaagtg 4981 ccgccgggtg gctccatcac cgccgccctg ccgccgcaca gtttcggagg agccggcgga 5041 ggaggaggag cagctggagc agcggcaatt gtgggcggca atcagtcgag cggcggcata 5101 cgcatagcca gcaatttgca caagccttcc ggcttgggag gcggcggcgg cggcggtgat 5161 ctgggcgagc atcatgcggc actggcggct gccctgacgt ccggcgttaa cagcaccggc 5221 actgccggca acaacaacgg cggcagcagc aacaacaaca ccaatccact gggcggatcg 5281 catggggatg cgatggccaa tgcctcgctg gcctctggcc tcaaacagat accgcagttc 5341 gatgatcccg tcgagcagtc gctggcctcg ctggagttca gcgccggttc cacgggcaag 5401 tcgtcgctga cggacaactt tttgatacag cagcacctga tgcagcccgc cggaccgcag 5461 caacagcagc agcagcagca gcagcaaccc tttggccatc agcagcagca acagcagcag 5521 cacatggact acgtgacgga gctgctgacc aagggggcgg agaatgtggg cggcatgaac 5581 gggaaccacc tgctgaactt taacctggac atggcggcgg cctaccagca gaagcatccc 5641 cagcagcagc agcaacagca gcagcagcag caggcgcaca acaacggctt caatgtggcc 5701 gacttcggca tggccggatt cgacggcctt aacatgacag cggccacagc attcctcgat 5761 ctggagcaca cgctccagca gcaacagatg cagcagatgc agctgcagca gcagcaacac 5821 cagcagcaac agcagcagac gcaccagcag cagcagcaac taagccagca gcagctgcag 5881 cagcaacagc agcaactgac gcagcagcag cagctgcagc aacagcagca gcaattccag 5941 cagcaacacc aacagcagct ccaccagcag cagcagcagc agcaggtggc caacaagctg 6001 ctgatcatac ccaagcccat cgaatcgatg atgcccagtc cgccggacaa gcagcagtcg 6061 cagcagcacc agaaggtcct gccgccgcag cagtcgccct cggacatgaa gctgcatccc 6121 agccaggcgg cggcggcggc cgcgcagggc aagctggcgc aggccttcaa ggcggccaac 6181 gagcagaacc tgaagaacgc cagctcgtgg tcctcgctgg cctcggccaa ctctccccag 6241 tcgcacacgt cgagcagctc gagcagcagc aaggccaagc cggccatgga ctcgttccag 6301 cagttccgca acaaagccaa agaacgcgac cgtctcaagc tgctggaggc ggccgagaag 6361 gagaagaaga accagaagga ggccgccgag aaggagcagc agcgcaagca ccacaagtcc 6421 tcctcctcct cgtcctcgtc gtcctcggcc gcagcagccc aggcggcagc cgttgcagcc 6481 gccacagcag cagcggcggc ggcggccctg ggagcagcag cagcggctgc agtggcctcc 6541 aatgcctcga acgcctcggg cggcagcagt agcggaggcg gcggcggcgg tgaatccaga 6601 agccaggcga tcagcggcga acgcgagcgt gatagggacc gcgagcggga acgtgagcgc 6661 tccggcagcg gtggcggcca gtccggcaat gggaacaaca gcagcaactc ggccaacagc 6721 aacggacccg gcagcgcggg cagcggcggc agtggcggcg gcggcggagg cagcggacca 6781 gccagcgccg gcggaccaaa cagcggcggc ggcggcaatg ccaacagcaa cagtggcggc 6841 ggaccggcgc tgctcaatgc cggcagcaat agcaacagcg gcgtgggcag cggtggcgcc 6901 gccagcagca acagcaacag cagcgtcggc ggcatcgtcg gcagcggcgg acccggctcc 6961 aatagccagg gcagcagcgg tggcggcggc ggcggcggag gacctgctag cggcggcatg 7021 ggcggcgggg ccctcgacta cggtcagcag gtggcggtgc taacgcaggt ggcggcacac 7081 gcccaggcgc agcatgtggc ggccgctgtg gccgctcagg cgattctggc ggcctcgccc 7141 ttgggcgcca tggagagcgg aaggaaaagc gttcacgatg ctcagccgca gatatcgcgg 7201 gtggatgaca tcaaggcgtc gccgggcggc cagggacaga gttcgccggc acagcaatcg 7261 ccgcaggatc gggcggccgc caaacgtgcc gagcagcggc gggccgagca ggagcggcgc 7321 aggcgcgaag cgttggctgg ccaaatcgat atgaacatgc agagcgatct catggccgcc 7381 ttcgaggaga cgctgtaggc caaggcccgg agaaagtcga ccaaccgggc cgtaggcgtc 7441 agcggcatca cctcaactac aaccaccacc tcatcatcct ccagcccatc gaggcggcgg 7501 acaaggcgcc agccacggac cacgttggac aacggcctgc aatagcagaa gcaacacggc 7561 taggacagca acaacgacga cagttcggca tatggaactg ttggagcaaa cagaaaacaa 7621 ccaacaacca agcaaccaac aaataaaaga aacaaacagc ataggctaaa accaataaag 7681 caatgttcta aggcgtaatt aaaatacgta catttagtga gtatatatat aatgcatata 7741 cggaaggagc gagcaaacaa aaagcaaaat gcaaaaagca aaatgcaaaa agcaacatcc 7801 accagcaaac aaaaacataa acataaagaa aaacaaaaac aaaaacaata cataacagaa 7861 tatggcaaat ttccttcggt tagcaattga ttcttcgcaa cttttttcaa atcactttcg 7921 attattattg cgtattacta ttacaatgat gataatggat cgtggcgaca aggatgtccg 7981 cacatggttc caaagcttat tatttttaat attattgatt gcataggcaa gtttagttcg 8041 tagctataca cttaattaat aatgcttatt ttttttctta attgtaacac acacctatgc 8101 ttagagttgt taactaattt aaaaagaaaa aaaccaacaa acaagaaaaa c