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LOCUS XM_070218274 3994 bp mRNA linear INV 09-DEC-2024 FAK (Graf), transcript variant X3, mRNA. ACCESSION XM_070218274 VERSION XM_070218274.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3994 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3994 /gene="Graf" /note="GTPase regulator associated with FAK; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108056722" CDS 444..3503 /gene="Graf" /codon_start=1 /product="rho GTPase-activating protein Graf isoform X1" /protein_id="XP_070074375.1" /db_xref="GeneID:108056722" /translation="MGGGKNIRRGLEPLEFEECIVDSPDFRENLNRHEKELDHTSHQI KRIIKEVKDLMSAAKMLSTRMKQLAILLTDFNFECIGTAQTDDENVICESLKRFGAII GNIEDEREKMLTLADKHIIESLEDFRKKQIGGVKENKKKFDKKTEKFCQSQERFLNMS TKKPENTIQEADASLGMHEREYIQESLSYVLRIQEVQERIKFEFVEILLAFISGWLVF YHTAHEQAEDHRDYLQDLRHKVQKTRENFEEAREKVTELKTKYMEKRTKPEEIFTKRG YLFLMEKSSILKISLLEPFKATWTKYYCTFKKQKREFTMLQFNQMNHNFTRPEARDDE KLTLFSCQRRASEFEKRFCFDLTFKEKPGVVYTFQALSEKDHRYWISAMDGTEPTYLA PGKIKVSEAYHLDEAGFMFIRRCIQVLEIRGLEDEGIYRKSGVGTKISKLLSLGLNQK ETDDVFVDDKYRDLMESNTIASALKMYLRNLNEPLMTYQYHSDFIEAAKQETLNQRVN EVHKLVYKLPQPNFQMLDMVICHLTDVSRKYEKNKMSVFNLGVVFGPTLLRPREESVA AILDIKFNNIVINILIDNYERIFKNKPSADVKLPVEAAKAPSIMYPARSSPPTRMPRA SQIGKAASTGAMGSTSSTAAAAAAAGNPMFLNQQKIYRVVSKSNCTEPTMSSSLQNIP NGDNYASGGAGCISLSPPMHMLNGILSPTIGSINNLHTISKNETTVGTTTAAGTRRYV PNDTAEVATDYGIIGANNGGVTLQSHHAIPVSSTTNFRHPEYLVTQSGSTNHLYTNSS SSVAGAAATSGNRISLNNVSPPNTAMRKERFLGSTGSGPQQHPPVQRGLHSYGQTKQQ QQQHYSPLMPTSTSSSNDSVCDSLSSNNGQHLGARNSNDYAMLTSQNSSLSPHLGHGS ACDEVVTATTVSCGGSANESSEYPPSKMHRNRDINQIKRDLSTGTARVRTLYACMGES EGELSFEPNQIITNVRYSHEPGWLQGTLNGKTGLIPENYVEHLKPHH" misc_feature 522..1142 /gene="Graf" /note="The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins; Region: BAR_RhoGAP_OPHN1-like; cd07602" /db_xref="CDD:153286" misc_feature order(549..551,558..563,573..575,579..584,591..596, 600..605,612..617,621..626,633..638,642..647,654..656, 735..737,744..749,1023..1025,1032..1037,1041..1043, 1056..1058,1065..1070,1074..1079,1089..1094,1101..1106, 1110..1115,1119..1124,1128..1133) /gene="Graf" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153286" misc_feature 1260..1613 /gene="Graf" /note="GTPase Regulator Associated with Focal adhesion and related proteins Pleckstrin homology (PH) domain; Region: BAR-PH_GRAF_family; cd01249" /db_xref="CDD:269953" misc_feature 1590..2195 /gene="Graf" /note="GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to...; Region: RhoGAP; cl02570" /db_xref="CDD:470621" misc_feature order(1734..1736,1866..1868,1878..1880,2085..2087, 2094..2099,2166..2168) /gene="Graf" /note="GTPase interaction site; other site" /db_xref="CDD:238090" misc_feature 1734..1736 /gene="Graf" /note="catalytic residue [active]" /db_xref="CDD:238090" misc_feature 3324..3485 /gene="Graf" /note="Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins; Region: SH3_GRAF-like; cd11882" /db_xref="CDD:212815" misc_feature order(3339..3341,3345..3347,3354..3356,3366..3368, 3423..3428,3465..3467,3471..3476) /gene="Graf" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212815" polyA_site 3994 /gene="Graf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgtgcgcgt ttgcgtttgc ggtacgcgaa aaagcgaaaa actaccgacg ggacggtctc 61 gtaactaaga gcatttattt ttgttttgcc caagtgaatt cggatttgga atcgcaatcg 121 gaatcggaat aggaattcgg aattccgatg ggctaaagtc attttccccc cgtgcagagt 181 gtttttgcga ggatgtcgac ccgatgaacg gaatatttca atatgcatcg tccacctact 241 gaaaaacagt atttacattg aaacgtaaat atttaaaagg agccagagcc actcttcctg 301 taaatgtttc aaacaccaca gcttcaacgc ctgaatacaa atatacacca tacattagcc 361 accgcggaag aacgcagcct gaaataacct aaagcagctg ggcccgaaaa tcttcaatat 421 ttttgaaacc aaaagcaaac acaatgggcg gcggcaaaaa tatacgccgc ggcttggagc 481 cactggagtt cgaggaatgc atcgtcgaca gtccggactt tcgcgaaaat ctaaaccgac 541 atgaaaagga gctggaccac actagtcatc aaataaaacg aataatcaaa gaggtcaagg 601 atctaatgag tgcggcaaag atgctgtcca ctagaatgaa acaattggcc attttactta 661 ccgactttaa ctttgagtgc ataggcactg ctcagaccga cgacgagaat gtcatttgcg 721 aaagcctaaa acgctttggt gctatcattg gcaatatcga agatgagcgc gagaaaatgc 781 taacgctcgc tgacaaacat attattgagt cgctggagga ttttcgaaaa aagcaaattg 841 gcggcgtcaa agaaaacaaa aagaaattcg ataagaaaac ggagaaattc tgtcagtcgc 901 aggagcgttt tctcaatatg tcaactaaaa agcccgagaa cacaatacag gaggctgatg 961 ctagcttggg catgcacgaa cgcgagtata tccaggagtc gctgagctat gtcctgcgga 1021 tacaggaagt gcaggaacga atcaaattcg agttcgtcga gatactgctc gcatttattt 1081 ctggctggtt ggtgttctat cacacagccc acgaacaggc ggaagatcat cgcgactacc 1141 tgcaggattt gaggcacaag gtgcagaaga ctcgcgaaaa tttcgaagag gctcgcgaaa 1201 aggttactga gttgaaaaca aagtacatgg aaaaacgcac aaagcccgag gagattttca 1261 caaagcgggg ctacctattt ttaatggaaa aaagttccat tctgaaaatc tcccttttag 1321 agccattcaa agcgacgtgg acgaaatact attgtacatt caagaagcaa aagcgcgagt 1381 tcacgatgct gcagttcaat caaatgaatc acaatttcac caggccggag gcacgcgatg 1441 acgagaagct gacgctcttc tcgtgccagc gaagagcctc ggagttcgag aagcgcttct 1501 gcttcgattt gaccttcaag gagaagccgg gcgtcgtcta tacctttcag gcgctaagcg 1561 aaaaggatca tcgctactgg attagcgcta tggatggcac ggagccgact tatctggcgc 1621 ctggtaaaat caaagtcagc gaggcatacc atctggatga ggccggcttc atgttcatcc 1681 gccgctgcat tcaagtatta gagatccgtg gtctggagga cgaggggatt taccggaaga 1741 gcggtgtggg taccaaaatc agcaagctgc tctcgctggg cctgaatcaa aaggaaaccg 1801 acgacgtctt cgtggacgac aagtaccggg atttaatgga gagcaacacc attgccagtg 1861 ccctgaaaat gtatctgcga aatctaaatg agcccttgat gacctatcaa taccacagtg 1921 attttattga ggcagccaag caagaaaccc tgaatcaacg cgtgaacgag gtgcacaagc 1981 tggtctacaa attgccacag cctaattttc agatgctgga catggttatt tgccatttga 2041 cagacgtttc acgaaagtac gagaagaaca agatgtccgt attcaatctg ggcgtggttt 2101 tcggacccac tttgctgcga cctcgcgagg aatcggtggc cgccatactg gatattaaat 2161 tcaacaatat cgtcattaac attctgattg ataactacga gcggatcttc aagaacaagc 2221 ccagcgccga tgtaaagctg cctgtggagg ccgccaaggc gccgagcatt atgtatcccg 2281 cacgcagcag tccacccacg cgaatgccgc gtgcctctca aataggaaag gccgcttcga 2341 ctggtgccat gggcagtacg agcagcactg cggcggcggc ggcagcggcg gggaatccga 2401 tgttcctcaa tcagcagaag atctaccgcg tggtcagcaa atccaattgt acagagccca 2461 ccatgtcgtc cagcctgcag aatattccga atggcgataa ctatgcttcg ggcggtgccg 2521 gctgcatttc cctgtcgccg cccatgcata tgctgaatgg catactctcg ccgaccatcg 2581 gcagcatcaa caatctgcac acaatatcga agaacgagac gacggtagga acgacaacgg 2641 cggcgggcac acggcgatac gttcccaacg acacggctga ggtcgcgacc gattatggta 2701 ttataggtgc caacaatggc ggcgtgacgc tgcagtcgca tcatgccata cccgtcagca 2761 gcacgaccaa tttccggcat cccgagtacc tagtgaccca gtcggggtcg actaatcacc 2821 tatatacgaa cagtagctct agtgtcgctg gtgccgccgc tacctcaggc aatcggatta 2881 gtctgaacaa cgtttccccg ccaaatacag cgatgcgaaa ggagagattt ctcggtagca 2941 ccggcagcgg gccgcagcag catccgcccg tccaacgggg cctccactcg tacggccaaa 3001 cgaagcagca gcagcagcag cactactcac ccctgatgcc cacgtcaacg tcgagctcca 3061 acgacagcgt atgtgattca ctttcttcca ataacggcca gcatttgggc gcacgcaact 3121 ctaatgatta tgccatgcta acgtcacaga actcatcgct gtcgccgcat cttggacacg 3181 gatccgcctg cgatgaggtc gtcacggcca ccaccgtcag ctgcggcggc tccgccaacg 3241 agagttccga gtatccgccc agcaaaatgc atcgtaatcg tgacattaac caaataaaac 3301 gtgatttgtc aacgggcaca gctcgagtgc gcacactcta tgcttgcatg ggcgagagcg 3361 agggggagct ttcgtttgag cccaatcaaa taataaccaa tgttcggtat tcccacgagc 3421 ccggctggtt gcagggcaca ctaaatggaa aaacaggact cattccggag aactatgtgg 3481 aacacttgaa gccccaccat tagattacgc tttggttcgg cttgggagtt cgaatgttcc 3541 ctcgtatttt ttgcattcgt cgttagataa aattaaaaaa aaaacaaaaa caaaacaaaa 3601 aaatgaaata ttaggaaatc gaaaaatgat cgttgtgtaa aaaaaactaa aactaatttt 3661 tgagtatgtg cccttggggt tgttttacat gaaatgcatt ttattttatg ctggaaacca 3721 ggaaaccaca atcttacctt ataactatgt taacctttat aataccatga ccatacaatg 3781 tacttatttt taattattta ataaggagta taaactcagt gcaactgcaa agatttattt 3841 actaattgtt acgctcttca tttgttgctt atttatacat aattcacgta atttgtgcaa 3901 aaatgaatta catcgtatct aatatctact acatatacaa ttgtataaaa ataaatagca 3961 gtgcttcgaa cacttttaaa atgtaaactt taaa