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LOCUS XM_070218250 5352 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070218250 VERSION XM_070218250.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5352 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5352 /gene="dnc" /note="phosphodiesterase dunce; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins" /db_xref="GeneID:108059389" CDS 441..3641 /gene="dnc" /codon_start=1 /product="3',5'-cyclic-AMP phosphodiesterase isoform X2" /protein_id="XP_070074351.1" /db_xref="GeneID:108059389" /translation="MSQESNSGAGGAPGGGGNGAPPPQYIITTPSEVDADEVRSMGDL ELGSPQSQQAQQMQMQSQKFSSSTTKVASSTTRSFSMSSSLQQQKQEKQENSLQQSQQ KIISSSTRSQSLQSSTIVGEATTISSGATQMLTAAQAATLAQQLKAQSSTSIITSSEQ RTSTSTSSSSSTRFVASGAPSSSSGGGGGVGNSGNNSKTRFQSFLQQPEGAHGFLTAH QKHVRQFVRSTSAHSEAAAGGSSGSGRPEKCIRSASTQIDDTTVGGGGGVVDSSSGSL ADSAATGGSMQLSMSKMGLQQSSSILISKSAETIEMKSSSSSAGMRTQLTLSGGFLAP PGSRKITILSPIHAPPGLHDMLKRAQGRSPLSPRISFPGSDSDLFGFDVENGQGARSP LEGGSPSAGLVLQNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVD RSHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPSGAPL SQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSR SGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAASGQQSAGQYARSRSPRGP PMSQISGVKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSV NRPLTSVAYTIFQSRELLTSLMIPPKTFLNFMTTLEDHYVKDNPFHNSLHAADVTQST NVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLE NHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVE TKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDK ERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRD YYQSMIPPSPPPSGVDENPQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTGTTG TTAASALGGAGGGGGAGGGVAPRTGGCQNQPQHGGM" misc_feature 1815..2183 /gene="dnc" /note="Phosphodiesterase 4 upstream conserved regions (UCR); Region: PDE4_UCR; pfam18100" /db_xref="CDD:465648" misc_feature 2619..3341 /gene="dnc" /note="3'5'-cyclic nucleotide phosphodiesterase; Region: PDEase_I; pfam00233" /db_xref="CDD:459723" polyA_site 5352 /gene="dnc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccaaacggcg gacgagacaa aactgttttt caccaaaaaa aaaacgaaat aaccgaaaaa 61 aacacgcaaa aacacgaaaa gtcacaaagg tgtaaaatac atattgaaaa tgttgaattt 121 cccttttgtt tgcattgcgc gttaatttcc acagcagcag agataaatac ataaaacgcc 181 gagaaattca agagaagcgg aagaaaaaag ctaaggccaa aaagcaatta aaacaaattg 241 tgccgtaagt caggtcggtg ggcttacagc ccagttcccc ggaaaaaaac caaaaaaaaa 301 accgaaacaa aaaaaaccaa aaaaacacaa aaaaagaaaa caaaacaaaa caggaaacca 361 ccgcaggatc tacagggaaa acaggaccca ccgccctcaa aagaaacgcg aaaagccaga 421 gaaaaataca aaagtaagcc atgtcccagg agagtaatag tggtgcagga ggagcaccag 481 gaggaggagg caatggtgca ccaccaccgc agtacataat aaccacgccc agcgaagtgg 541 atgcggatga ggtgcgctcc atgggcgact tggagctggg ctccccgcaa tcccagcaag 601 cccagcaaat gcagatgcag agccagaagt tctcgagctc caccaccaag gtggcctcct 661 ccaccactcg ctccttttcg atgagcagca gcctgcagca gcagaagcag gagaagcagg 721 agaacagcct gcagcaatcg cagcagaaga tcatctccag ttcgacgcgc agccagagcc 781 ttcagtccag cacgattgtg ggcgaggcca ccaccatttc gagtggcgcc acccagatgc 841 tcacagccgc ccaggcggcc accttggccc agcagctgaa ggcccagagc tccacgtcga 901 taatcacgag cagcgagcag cggaccagca cgagcacgag cagcagcagc agcactcgat 961 tcgtggccag tggagcaccc tctagctcct ccggtggagg cggtggcgtt ggtaactccg 1021 gcaacaacag caagacccgc ttccagagtt tcctccagca gccggaggga gcccatggct 1081 tccttaccgc ccaccagaag catgtgcgcc agtttgtgcg ctccacatcg gcccactcgg 1141 aggcggccgc cggtggttcc tccggcagcg gcaggccgga aaagtgcatc cgcagcgcct 1201 ccacgcagat cgatgatacc accgttggcg gcggcggagg agtggtggat tcgtcgtcgg 1261 gcagcttggc ggacagcgcc gccaccggcg gatccatgca gctgtcgatg agcaaaatgg 1321 gcctccagca gtcctcctcg atcctcatct ccaagtcggc cgagaccatc gagatgaaga 1381 gcagctcctc gtcggccggc atgcgcaccc agttgacctt gagtggcggc tttctcgctc 1441 cgcccggcag ccggaagatc accatcttga gccccatcca cgcgccgccc ggcctccacg 1501 acatgctaaa aagggcccag ggacgctcgc ccctctcgcc caggatcagc ttccccggca 1561 gcgattcgga cctcttcggt ttcgatgtag aaaatggcca gggcgctcga tcaccgctcg 1621 agggcggctc tcccagcgcc ggtttggttc tacagaattt gccgcagcgt cgcgaatcgt 1681 ttctatatcg ctccgattcc gactttgaga tgtcgcccaa gtccatgtct cgaaactcaa 1741 gcatcgctag cgaaaggttt aaagaacagg aagcctctat actcgttgac cgatcccatg 1801 gcgaggatct cattgtgacg cctttcgccc aaattttagc cagcttacgt tcagtgcgca 1861 acaatttatt aagtctgaca aatgttccag catcaaacaa atccaggcgg cccaaccaat 1921 cctcgtcggc ctcccgatcg ggaaatccct cgggagcccc gctgtcccag ggcgaggagg 1981 cctacacccg cctggccacc gacaccatcg aggagctgga ctggtgcctc gaccagctgg 2041 agaccatcca gacccatcgc agcgtctccg acatggcttc gctcaagttc aaacgcatgc 2101 tcaacaagga gctgtcacac ttcagcgagt ccagcagatc gggaaatcag atttccgagt 2161 acatttgttc cacatttttg gacaagcagc aggagttcga cttgccgtcg ctgcgcgtgg 2221 aggataatcc ggagctggtg gccgccaatg ccgccgccag cggccagcag tccgctggcc 2281 agtacgcccg ctcccgctcc ccccgcggcc cgcccatgtc gcagatcagc ggcgtgaagc 2341 ggcccctttc gcacaccaac agcttcaccg gcgaacggct gcccaccttc ggcgtggaga 2401 cgcccaggga gaacgagctg ggcaccctgc tcggcgaact ggacacctgg ggcatccaga 2461 tattcagcat cggcgagttc agcgtcaacc gaccgctcac cagtgtggca tacaccatat 2521 ttcagagtag agaattactg accagtctta tgataccacc gaaaactttt cttaacttta 2581 tgactactct ggaggaccac tacgtcaaag acaatccgtt tcacaattcg ctgcatgccg 2641 ccgacgtgac ccagagcacc aatgtgctac tcaatacacc ggcgctggag ggcgtattca 2701 caccgctcga ggtgggcggg gcactgttcg ccgcttgcat ccacgatgtt gatcatcccg 2761 gcttaaccaa tcagttcttg gttaactcaa gttccgaact agcattaatg tacaatgacg 2821 aatctgtttt ggaaaatcat catttagctg ttgcctttaa attattgcaa aatcaaggat 2881 gtgatatatt ctgtaatatg caaaagaaac aacgccaaac attgaggaaa atggttattg 2941 atattgtgct gtccacggac atgtccaagc acatgagtct gctggccgac ctgaagacaa 3001 tggtggaaac caagaaggtg gccggctccg gagtcctgct gctggacaac tacaccgatc 3061 gcatacaggt gctcgagaat ctggtgcact gcgccgatct gagcaatccc accaagccgc 3121 tgccgcttta caagcgctgg gtggccctgc tcatggagga gttcttcctg cagggcgaca 3181 aggagcgcga gtcgggcatg gacatcagtc ccatgtgcga tcgccacaac gccaccatcg 3241 agaagtcgca ggtgggcttc atcgactata tcgtccaccc gctgtgggag acctgggcgg 3301 acctggtgca cccggacgcc caggacatac tcgacacgct tgaagagaac agagactact 3361 accagagcat gataccgccc tcgccgccgc cgtcgggggt cgatgagaat ccgcaggagg 3421 acaggatacg ctttcaagta accctggagg agtccgacca ggagaacctc gccgagctgg 3481 aggagggcga cgagagtggc ggcgagagca ccaccaccgg aacaaccgga accaccgccg 3541 cctccgcgct gggcggggct gggggcggtg gcggtgctgg cgggggcgtg gcacccagga 3601 cgggtggctg ccaaaaccaa ccgcagcacg gtggaatgtg acggagagtc gtgggaattt 3661 atcgcaaaat acaggaaaag gctcacaact ttttcctatt acgttagtga ctactattaa 3721 cacacaaaaa ccaaacaaaa accaaaaacg aaaaactcaa aaaaaaacaa agaaaaactc 3781 ttggaaaaat gcaaaaaaaa aatacaaaaa aaaaccaaaa agccaactaa agaaatatta 3841 aacaaatgtt taaagcatac aaagaatcca aaacagcaat agcaaaagta ccgtttaact 3901 tataaagcct agagaaaaac gaaaaaggaa attagaaatt tacttaatgg aacaccgaga 3961 ttgatgttga aaatacactg aaaaaaagag atcacgagga gatgagctaa ctaagagaaa 4021 tcttacatat tgttaaacgt acacacacac actaaatcca agacaaagca aagataatga 4081 gaaaccccat tgataagtaa tactaagaag ataccaaaac taccgccccc ttcccccaat 4141 tatatagacg atttttgttg catgtgtagg caaatgattt ttgttaaatt catctgaagt 4201 gggacatcaa tcggagaaaa accccctgag ccccctaacc aagtctcctc ttttaaacca 4261 ttgactaaag tgaaatattt aaaaacaaga aaaacaaccg aacggaagga ataattaata 4321 cgacttagct taagagaagt ttttaagttt tgaatgtttt gcatgcccga acagattcat 4381 tttactcgat tgataacgtt agatctaact ttagaccgat taacgctaac ggcaacacac 4441 atatggaatt ttttatgatt tagaccccag cgatagaagc gaaaacaaaa agaaaaacaa 4501 aaactaaaac caaccatgtt aagtgtaaga acccagtgaa ttaaaccaaa attgaaagcc 4561 acccgagtta agaccattta attcaaatct aaatccaaat cccgaacccc aaacaacaaa 4621 gaagaacagt ctacagccag actgtagttg tatagtaata tatatgatat aaatattttt 4681 ttttaatatt atttgtaaat aatttaaatg ttggactcga atttaaatca agcggctagc 4741 aaatgttgca gccaaactaa aactaaaatg aaaacaaagc caaaaacaca taaataacat 4801 aaataaggaa gtaagtggag agaaaaaaag gaaggtggaa aagaaaggaa aaactattgt 4861 acaattagct aaagaatttc catttcaatt ttcgattttc gatttgaatt gcaatttgat 4921 ttgcttccag aaaacaagag aaagagaaag atgataaaga tatagaaaag gaaaggagaa 4981 gagatgagaa gaaaagaaat tagagagaga taaaccgaaa ataatgtcaa acgctgtctt 5041 cgcaaatatt tttcgctata tatttactta tatcattatt tactagttac taagctactt 5101 actgagccac acaatttaaa aacgaaagag acaagacacc cggtcgagaa agagagggag 5161 catcgatgaa tttagtgaac aaacattaaa cttactggca gaaagcacac aatttacaaa 5221 ccacaaagca aaccaccaga aaagactctt caagcacaag caatttttag ttttccaaat 5281 gaaaaatgaa aaaccaaagc aaagcaaaac caacacacaa aggaaaagca aaacaagaaa 5341 aaacaaaaaa ca