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LOCUS XM_070218248 3684 bp mRNA linear INV 09-DEC-2024 X7, mRNA. ACCESSION XM_070218248 VERSION XM_070218248.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3684 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3684 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108063859" CDS 265..2472 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X4" /protein_id="XP_070074349.1" /db_xref="GeneID:108063859" /translation="MQRCNQNSSSSNINTTSNTSGSSNSNKRCPPKYAGNNLAATNGM MAYQQHATATAATLQHGSNKTRKSRYNSNGNKQQQQFGNIQKRNGIGIAGLAGSESSS SPSKTTWLERGYGHRLANSSCIEDKFLGQHNPGHRNSTSSEATSEDIDSSREHLNKPK GSSSGGGGSSCNNHVAGGNKSRSKRQAKSCGQQIRQNPDQKPAGATASKAKQANGKWR QQQPNPNGNANPNQQQQQQQQQKRSNKKVQGKCSSIAGNAGSNGAKHAGSHPRKMATC DSSSSSALSSPTSSPGSSPQANGSRKRIERSLMPGAALEWRRERERGRQNANFLVPPL RQYEQLDLDDRSLVQQLRRHVIDHHLLRVYGFPVESVVHEGAIEIFKCLPHMSFAAAL AETVINCHDGLSSQQAEEVATSSDSGNSSPRSLDSESSGEWSGSECESSNSSSSSSSA DGDGELGLELKYCQYVQVERSLAKPCARCKRHFLVDELTGEYLSREECHYHSGKYQRY YDGVCHGRWTCCNEGEESSPGCCQGDRHVWTGSVVGVNGPYYDFVRTQHRDQSEEQSP AVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPECDIVDYNTRYSGISERDLR SGAKSLAEVQRDLLQLIAADTILVGHGLDNDLRALRLVHNTLIDTSISFPHCSGFPYR RALRHLTKVHLKREIQSGDGTTGHSSFEDARACMELMLWRIGREQDPTWSWDD" misc_feature <1747..1857 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 1969..2424 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(1978..1989,1993..1995,2212..2217,2221..2229, 2380..2382,2395..2397) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(1978..1989,1993..1995,2212..2217,2221..2226, 2380..2382,2395..2397) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(1978..1980,1984..1986,2227..2229,2380..2382, 2395..2397) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 3684 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accttggcag ttgacgtagt tgctgtggaa tattattatc aacatgttat cggaacagtt 61 caagacactt tcaaaacaaa caaaacattt gcacaaaagt atcaaaattt tcgccgttgg 121 tttcgcttct tttcgtcttt agtgaacact accaccatta cactatctcc actaaatcga 181 atcgaatcga gcttaatctt ttctaatcct tggaaaagcg gggagaagcg caaaaattgc 241 aaacattaat gaaaagatga caaaatgcag cgttgcaacc agaacagcag cagcagcaac 301 atcaacacga ccagcaacac cagcggcagc agcaacagca acaaacgctg ccctccgaag 361 tacgccggca acaacctagc agcaactaac ggcatgatgg cctaccagca acatgcaaca 421 gccacggcag caacattgca gcacggcagc aacaagactc gcaagagtcg ctacaacagc 481 aacggcaaca agcagcaaca gcagtttggg aatattcaga agcggaatgg catcggaatc 541 gctggcctcg ccggaagtga gtcctcgtcc tccccctcga agaccacctg gttggagaga 601 ggctacggac atcggctggc caattcttca tgcatcgaag acaaattcct gggccagcac 661 aatccggggc atcggaatag caccagcagc gaggcgacca gcgaggacat cgactccagc 721 agggagcacc tgaacaagcc caagggcagt tcgagcggag gaggcggaag cagttgcaac 781 aaccatgtgg ccggcggcaa caagagccgc tcgaagcgcc aggcgaagtc gtgtggccag 841 cagatccgcc agaatcccga ccagaagcca gcgggagcca ctgcctccaa ggccaagcag 901 gccaacggca agtggcgcca gcagcagccc aatcccaatg gcaatgccaa tcccaaccag 961 cagcagcagc aacagcaaca gcagaagcgc agcaacaaga aagtgcaggg aaagtgcagc 1021 agcatcgccg gaaatgccgg cagcaacggc gccaagcacg ccggcagcca tccccgcaag 1081 atggccacct gcgacagcag ctcctcttcg gccctcagct cgcccaccag ttcgcccggc 1141 agctccccgc aggccaacgg cagccggaag cggatcgagc gctccctgat gccgggagcc 1201 gctttggagt ggcggcggga gcgggaacgc ggccgccaga acgccaactt cctggtgccc 1261 ccgctccggc agtacgagca gctggacctg gacgaccgga gcctggtgca gcagctgcgg 1321 cgccacgtca tcgaccacca cctgctgcgc gtctacggct tccccgtgga gtccgtcgtc 1381 cacgagggcg ccatcgagat cttcaagtgc ctgccgcaca tgagcttcgc cgccgccctg 1441 gcggaaacgg tgatcaactg ccacgacggg ctgagcagcc agcaggcgga ggaggtggcc 1501 acctccagtg actcgggcaa cagctcgccc cgctccctgg actcggagtc ctccggcgag 1561 tggagcggca gcgagtgcga gtcctccaac tcctcctcgt cctcgtcctc cgccgatggc 1621 gatggcgaac tgggtctcga gctcaagtac tgccagtacg tccaggtgga gcggagcctg 1681 gccaagccgt gcgcccgctg caagcggcac ttcctggtgg acgagctgac cggcgagtac 1741 ctgagccgcg aggagtgcca ctaccactcg ggcaagtacc agcgctacta cgacggcgtc 1801 tgccacggcc gctggacgtg ctgcaacgag ggcgaggaga gctcgccggg atgctgccag 1861 ggcgaccggc acgtgtggac cggctcggtg gtgggcgtca atgggccgta ctatgatttt 1921 gtgcgcaccc agcacaggga tcagtcggaa gagcaatccc ccgccgtcta cgccctcgac 1981 tgcgagatga gctacacggg ccgcggtctg gacgtgacca aggtctcgct ggtggccctc 2041 aacgggcagc tggtgtacga gcacttcgtg cggcccgagt gcgacatcgt ggactacaac 2101 acccggtact cgggcatctc ggagcgggac ctgcgctccg gcgccaagag cctggccgag 2161 gtgcagcggg atctgctcca gctgatcgcc gccgacacga tcctcgtcgg ccacgggctg 2221 gacaacgacc tgcgggccct gcggctggtg cacaacaccc tgatcgacac ctctatcagc 2281 ttcccgcact gcagcggctt cccctaccgc cgggccctgc gccacctgac caaggtccac 2341 ctgaagcggg agatccagag cggcgacggg accacgggac acagcagctt cgaggacgcg 2401 agggcctgca tggagctgat gctctggcgg atcggccggg aacaggatcc cacatggagc 2461 tgggacgatt gaggaggggg atctatcggg ggatctatcg aggggccagc aagtactttt 2521 agtcgttagg agatcgccta gtttgtaccg tattcaagaa acaaaacaca atcccaaaat 2581 ctcagctggg gcgcccacct ggcagtcggt ttctatgcca ccgatctata ctatactgtg 2641 tagatctata aagacccatt gccaggtgtc ggctcagcgt atatcatata cacctatatc 2701 gagaaaatcg agtaaatcga gcaaatcgag taaatcgcaa attggaaaaa ttacaaaaat 2761 ggcaaaaaaa aaatagagag gataataata tttatatgcg atacataagg tacattttgt 2821 aagcgtatat ttatagagat aaaatagaac tttaatctac atatgtatat acacatattg 2881 tttttttttt cttgattaat ttcgaaccac gagaaaatgt actgaagttt tagctgtgat 2941 gtttttttca ctttctcaca tatttacacg acaaaaggaa aatgaaaagt aaaagcaaac 3001 aaaaaaagag aagaaaaata caaaaatata tacatacgca tacattattt ttttaagagc 3061 acagaagaaa ggcaatccaa atacttttta atttcgacca aaactttcaa ctaaatcact 3121 ccatttatca taatctacca ttaggtttcg tttcgtttta ttttttcccc aaaccaaacc 3181 atttctttta ttattttacg aatatacaaa tcatctcata cgcaaacgga agaagaaaaa 3241 agtaaagttt aactttaact actttataca ctatgcataa acgtaagtta ggttaatcct 3301 gtgttttttt ccaaaacttt ttgattattt atttaacgaa ttcgcgcgac aagttcattg 3361 aaaacttctt caagtgttta atttttcaca ttgaactcca ttcttaggct aagctatata 3421 tttgttttct ctcgagaaac tatcgactat taaaaccact attccttgac tccgatttca 3481 taagacgaga cgaggaatac tttattcgaa aatcgatgtt cctagcagca taagtttcag 3541 cacaagtaca ctgcaaaaag cggctgtttt tatattgaac ggaaagagaa agaagagaag 3601 agtaatgcaa atgcacaacg acaaaattta aagagaataa aagaaacaaa gatttgttta 3661 aaactaaata tcacctcaag caaa